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Properties
| Property Name | Value |
|---|
| TranscriptId | 575288 |
| Track | FilteredModels2 |
| ProteinId | 575202 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_2 | supercontig | scaffold_2:1144862..1146852 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1069 ID=mRNA_1069|Name=jgi.p|Nanoce1779_2|575202|organism=Nannochloropsis oceanica|type=mRNA|length=1898bp
ACAGGCACAAAATCACATCAACAAGACCATGCCGATGCGGGGTAAGAAAG
TGGCGTTCTTGGACTGCAAATGCGGCGTTGCCGGGGACATGTTGCTGGGC
GCATTGCTCGACGCGGGGGCTCCACGAGACCAGCTTGTCGCGGGCCTAAA
GACTATTTTGCCGCTGGCGGAAGAATGGAATTTGGATGTGCAAAATGTGG
TGCGAAGCAAGGGGCACATAGCTGCGACCTACATCAAGGTCTGCTCCATC
TACGGACATGAGGAAGTTTCTTCGGGTGGTAGCGCGCGGACTGCAGATGC
AGAGAATTTGCATCAACACAGCCACAACCACGACCACGAGCACAAGCATA
CACACGCCCACCTAGACAGCCACGAGGGGGGGGAAACCCACAGCCATCCG
CACTCGCACCCTCACTCCCACGCGCATGGGCATGTCCACACCCACACGCC
CGACCACAGCGGTGCGGATCATCCGCACGCTGCCCTCGCAGGACGTTGCA
CCCGTACGCATGATGATCACTCTCATTACCACACCCATGCTCACGGAGAC
ATTGTCCACGACCACCATCATCAACACAACGGCCCGCTTCGCAACCTCGA
TGTTATCCGCGACATGATCGAAGCCGCTGAAGGACTCCCGGAGTCGGTCC
GTGTACAAAGTATTGCCGTTTTTACCGCGTTGGCAGAAGCAGAGGCAGCG
ACACATGGAGTGGGTATCGACGAGATCCATTTTCATGAAGTTGGCGCAGT
AGACAGCATCATTGACACAGTCGGTTCCGTCTTTGCCTTACATCTGCTCG
GTGTTGAGGAGGTGTATTCCTCCGCCTTGCCCTTTGGCGAGGGCTTCACC
GGAGAGACAGCCCACGGGATCTTGGCTGTCCCTACCCCTGCCACCCTGCG
GCTCATGCTCGGCTTGCCTACCACCCCGGGTCCGAAGGGAGCGATGGGCG
AGCTCGTCACACCAACAGGGGCGTCTTTGATCAAGGTTTTGGCTGAGGGG
AGAGTAGGACAGCCCCCGATTTTTGTACCTGAGTTGTTGGGGATCGGAGC
GGGGACAAAGGATTTTCCGGGCCATGCGAATGTGGTGAGGGTGGTGATTG
GAAGGAGGCTGGAGGAAGGGGAGGAGGGACGTGAGGGAGAGGTGGTCCGA
CGGGCGTCCTTTGATGCTGGGGGGGAGGAGGATGGGATGGTACCCCGCAC
CCGTCGTCAGCAGCAGCACCCTCAATCACCTCTTCGTTACCTCTCCGAAA
AAGGGGAGCCTTCCCATCCAATCACCCGCCCTCCCGCCCTCCACCCCCCC
ACCACCCACACCACACACACACATGCAATCCCACCTTCCTCGGGCTCTGC
CTGGTCTTCCGGAGGATGGGAAGAACGGCACTTGTGTGAATTGGAGGCCA
ACTTGGACGATATGACGCCCGAAACTGCCTCTTTTGCCCTCGAGCGGTTA
ATGTCTGAGCCAGGCTGCCTCGACGTCTGGTACACGCCCGCCGTTATGAA
AAAAGGCCGCCCGGGCCTGACCCTCCACCTTTTGTGTGAACCGGCCACTG
CCCCTGCTCTCTTGCGGTGCATGTTCTTGGAGACCCCCACCCTTGGGGTG
AGGGCACATACCGTGGCGAGGTTGGCGCTGGAGAGGGATTTCGTGATGGT
GCCCACAAGATATGGAGAGGTGCGGGCTAAAATAGGTCGAATGGACGGGG
TGGTGGTGAATGTGAAACCGGAGTACGAAGATTGTAGGGGCGCCGCCATG
GCGTTGGGCTTGCCCCTGAGGGTGGTGGCGGAAGAGGCGGCAAGGGTAGC
ACGAGGACAGATGGATGATGAGGGAGGGAAGGAGGGAGGGAAGGAGGGGA
GGATAGAGGAGGAGGGCCAGGGGGAGAAGGGGAAGTGAACGTGAAGCA back to topprotein sequence of jgi.p|Nanoce1779_2|575202 >mRNA_1069-protein ID=mRNA_1069-protein|Name=jgi.p|Nanoce1779_2|575202|organism=Nannochloropsis oceanica|type=polypeptide|length=620bp
MPMRGKKVAFLDCKCGVAGDMLLGALLDAGAPRDQLVAGLKTILPLAEEW
NLDVQNVVRSKGHIAATYIKVCSIYGHEEVSSGGSARTADAENLHQHSHN
HDHEHKHTHAHLDSHEGGETHSHPHSHPHSHAHGHVHTHTPDHSGADHPH
AALAGRCTRTHDDHSHYHTHAHGDIVHDHHHQHNGPLRNLDVIRDMIEAA
EGLPESVRVQSIAVFTALAEAEAATHGVGIDEIHFHEVGAVDSIIDTVGS
VFALHLLGVEEVYSSALPFGEGFTGETAHGILAVPTPATLRLMLGLPTTP
GPKGAMGELVTPTGASLIKVLAEGRVGQPPIFVPELLGIGAGTKDFPGHA
NVVRVVIGRRLEEGEEGREGEVVRRASFDAGGEEDGMVPRTRRQQQHPQS
PLRYLSEKGEPSHPITRPPALHPPTTHTTHTHAIPPSSGSAWSSGGWEER
HLCELEANLDDMTPETASFALERLMSEPGCLDVWYTPAVMKKGRPGLTLH
LLCEPATAPALLRCMFLETPTLGVRAHTVARLALERDFVMVPTRYGEVRA
KIGRMDGVVVNVKPEYEDCRGAAMALGLPLRVVAEEAARVARGQMDDEGG
KEGGKEGRIEEEGQGEKGK* back to topmRNA from alignment at scaffold_2:1144862..1146852+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1069 ID=mRNA_1069|Name=jgi.p|Nanoce1779_2|575202|organism=Nannochloropsis oceanica|type=mRNA|length=1991bp|location=Sequence derived from alignment at scaffold_2:1144862..1146852+ (Nannochloropsis oceanica)
ACAGGCACAAAATCACATCAACAAGACCATGCCGATGCGGGGTAAGAAAG
TGGCGTTCTTGGACTGCAAATGCGGCGTTGCCGGGGACATGTTGCTGGGC
GCATTGCTCGACGCGGTAAGGGAACTTGCCTGCATCGTCGTAGAATGTTC
GGTGTGCCTTCAATGTCCTTCACGACCACAACATCCACACCCACGCACAC
ATTGATAGGGGGCTCCACGAGACCAGCTTGTCGCGGGCCTAAAGACTATT
TTGCCGCTGGCGGAAGAATGGAATTTGGATGTGCAAAATGTGGTGCGAAG
CAAGGGGCACATAGCTGCGACCTACATCAAGGTCTGCTCCATCTACGGAC
ATGAGGAAGTTTCTTCGGGTGGTAGCGCGCGGACTGCAGATGCAGAGAAT
TTGCATCAACACAGCCACAACCACGACCACGAGCACAAGCATACACACGC
CCACCTAGACAGCCACGAGGGGGGGGAAACCCACAGCCATCCGCACTCGC
ACCCTCACTCCCACGCGCATGGGCATGTCCACACCCACACGCCCGACCAC
AGCGGTGCGGATCATCCGCACGCTGCCCTCGCAGGACGTTGCACCCGTAC
GCATGATGATCACTCTCATTACCACACCCATGCTCACGGAGACATTGTCC
ACGACCACCATCATCAACACAACGGCCCGCTTCGCAACCTCGATGTTATC
CGCGACATGATCGAAGCCGCTGAAGGACTCCCGGAGTCGGTCCGTGTACA
AAGTATTGCCGTTTTTACCGCGTTGGCAGAAGCAGAGGCAGCGACACATG
GAGTGGGTATCGACGAGATCCATTTTCATGAAGTTGGCGCAGTAGACAGC
ATCATTGACACAGTCGGTTCCGTCTTTGCCTTACATCTGCTCGGTGTTGA
GGAGGTGTATTCCTCCGCCTTGCCCTTTGGCGAGGGCTTCACCGGAGAGA
CAGCCCACGGGATCTTGGCTGTCCCTACCCCTGCCACCCTGCGGCTCATG
CTCGGCTTGCCTACCACCCCGGGTCCGAAGGGAGCGATGGGCGAGCTCGT
CACACCAACAGGGGCGTCTTTGATCAAGGTTTTGGCTGAGGGGAGAGTAG
GACAGCCCCCGATTTTTGTACCTGAGTTGTTGGGGATCGGAGCGGGGACA
AAGGATTTTCCGGGCCATGCGAATGTGGTGAGGGTGGTGATTGGAAGGAG
GCTGGAGGAAGGGGAGGAGGGACGTGAGGGAGAGGTGGTCCGACGGGCGT
CCTTTGATGCTGGGGGGGAGGAGGATGGGATGGTACCCCGCACCCGTCGT
CAGCAGCAGCACCCTCAATCACCTCTTCGTTACCTCTCCGAAAAAGGGGA
GCCTTCCCATCCAATCACCCGCCCTCCCGCCCTCCACCCCCCCACCACCC
ACACCACACACACACATGCAATCCCACCTTCCTCGGGCTCTGCCTGGTCT
TCCGGAGGATGGGAAGAACGGCACTTGTGTGAATTGGAGGCCAACTTGGA
CGATATGACGCCCGAAACTGCCTCTTTTGCCCTCGAGCGGTTAATGTCTG
AGCCAGGCTGCCTCGACGTCTGGTACACGCCCGCCGTTATGAAAAAAGGC
CGCCCGGGCCTGACCCTCCACCTTTTGTGTGAACCGGCCACTGCCCCTGC
TCTCTTGCGGTGCATGTTCTTGGAGACCCCCACCCTTGGGGTGAGGGCAC
ATACCGTGGCGAGGTTGGCGCTGGAGAGGGATTTCGTGATGGTGCCCACA
AGATATGGAGAGGTGCGGGCTAAAATAGGTCGAATGGACGGGGTGGTGGT
GAATGTGAAACCGGAGTACGAAGATTGTAGGGGCGCCGCCATGGCGTTGG
GCTTGCCCCTGAGGGTGGTGGCGGAAGAGGCGGCAAGGGTAGCACGAGGA
CAGATGGATGATGAGGGAGGGAAGGAGGGAGGGAAGGAGGGGAGGATAGA
GGAGGAGGGCCAGGGGGAGAAGGGGAAGTGAACGTGAAGCA back to topCoding sequence (CDS) from alignment at scaffold_2:1144862..1146852+ >mRNA_1069 ID=mRNA_1069|Name=jgi.p|Nanoce1779_2|575202|organism=Nannochloropsis oceanica|type=CDS|length=3720bp|location=Sequence derived from alignment at scaffold_2:1144862..1146852+ (Nannochloropsis oceanica)
ATGCCGATGCGGGGTAAGAAAGTGGCGTTCTTGGACTGCAAATGCGGCGT
TGCCGGGGACATGTTGCTGGGCGCATTGCTCGACGCGGGGGCTCCACGAG
ACCAGCTTGTCGCGGGCCTAAAGACTATTTTGCCGCTGGCGGAAGAATGG
AATTTGGATGTGCAAAATGTGGTGCGAAGCAAGGGGCACATAGCTGCGAC
CTACATCAAGGTCTGCTCCATCTACGGACATGAGGAAGTTTCTTCGGGTG
GTAGCGCGCGGACTGCAGATGCAGAGAATTTGCATCAACACAGCCACAAC
CACGACCACGAGCACAAGCATACACACGCCCACCTAGACAGCCACGAGGG
GGGGGAAACCCACAGCCATCCGCACTCGCACCCTCACTCCCACGCGCATG
GGCATGTCCACACCCACACGCCCGACCACAGCGGTGCGGATCATCCGCAC
GCTGCCCTCGCAGGACGTTGCACCCGTACGCATGATGATCACTCTCATTA
CCACACCCATGCTCACGGAGACATTGTCCACGACCACCATCATCAACACA
ACGGCCCGCTTCGCAACCTCGATGTTATCCGCGACATGATCGAAGCCGCT
GAAGGACTCCCGGAGTCGGTCCGTGTACAAAGTATTGCCGTTTTTACCGC
GTTGGCAGAAGCAGAGGCAGCGACACATGGAGTGGGTATCGACGAGATCC
ATTTTCATGAAGTTGGCGCAGTAGACAGCATCATTGACACAGTCGGTTCC
GTCTTTGCCTTACATCTGCTCGGTGTTGAGGAGGTGTATTCCTCCGCCTT
GCCCTTTGGCGAGGGCTTCACCGGAGAGACAGCCCACGGGATCTTGGCTG
TCCCTACCCCTGCCACCCTGCGGCTCATGCTCGGCTTGCCTACCACCCCG
GGTCCGAAGGGAGCGATGGGCGAGCTCGTCACACCAACAGGGGCGTCTTT
GATCAAGGTTTTGGCTGAGGGGAGAGTAGGACAGCCCCCGATTTTTGTAC
CTGAGTTGTTGGGGATCGGAGCGGGGACAAAGGATTTTCCGGGCCATGCG
AATGTGGTGAGGGTGGTGATTGGAAGGAGGCTGGAGGAAGGGGAGGAGGG
ACGTGAGGGAGAGGTGGTCCGACGGGCGTCCTTTGATGCTGGGGGGGAGG
AGGATGGGATGGTACCCCGCACCCGTCGTCAGCAGCAGCACCCTCAATCA
CCTCTTCGTTACCTCTCCGAAAAAGGGGAGCCTTCCCATCCAATCACCCG
CCCTCCCGCCCTCCACCCCCCCACCACCCACACCACACACACACATGCAA
TCCCACCTTCCTCGGGCTCTGCCTGGTCTTCCGGAGGATGGGAAGAACGG
CACTTGTGTGAATTGGAGGCCAACTTGGACGATATGACGCCCGAAACTGC
CTCTTTTGCCCTCGAGCGGTTAATGTCTGAGCCAGGCTGCCTCGACGTCT
GGTACACGCCCGCCGTTATGAAAAAAGGCCGCCCGGGCCTGACCCTCCAC
CTTTTGTGTGAACCGGCCACTGCCCCTGCTCTCTTGCGGTGCATGTTCTT
GGAGACCCCCACCCTTGGGGTGAGGGCACATACCGTGGCGAGGTTGGCGC
TGGAGAGGGATTTCGTGATGGTGCCCACAAGATATGGAGAGGTGCGGGCT
AAAATAGGTCGAATGGACGGGGTGGTGGTGAATGTGAAACCGGAGTACGA
AGATTGTAGGGGCGCCGCCATGGCGTTGGGCTTGCCCCTGAGGGTGGTGG
CGGAAGAGGCGGCAAGGGTAGCACGAGGACAGATGGATGATGAGGGAGGG
AAGGAGGGAGGGAAGGAGGGGAGGATAGAGGAGGAGGGCCAGGGGGAGAA
GGGGAAGTGAATGCCGATGCGGGGTAAGAAAGTGGCGTTCTTGGACTGCA
AATGCGGCGTTGCCGGGGACATGTTGCTGGGCGCATTGCTCGACGCGGGG
GCTCCACGAGACCAGCTTGTCGCGGGCCTAAAGACTATTTTGCCGCTGGC
GGAAGAATGGAATTTGGATGTGCAAAATGTGGTGCGAAGCAAGGGGCACA
TAGCTGCGACCTACATCAAGGTCTGCTCCATCTACGGACATGAGGAAGTT
TCTTCGGGTGGTAGCGCGCGGACTGCAGATGCAGAGAATTTGCATCAACA
CAGCCACAACCACGACCACGAGCACAAGCATACACACGCCCACCTAGACA
GCCACGAGGGGGGGGAAACCCACAGCCATCCGCACTCGCACCCTCACTCC
CACGCGCATGGGCATGTCCACACCCACACGCCCGACCACAGCGGTGCGGA
TCATCCGCACGCTGCCCTCGCAGGACGTTGCACCCGTACGCATGATGATC
ACTCTCATTACCACACCCATGCTCACGGAGACATTGTCCACGACCACCAT
CATCAACACAACGGCCCGCTTCGCAACCTCGATGTTATCCGCGACATGAT
CGAAGCCGCTGAAGGACTCCCGGAGTCGGTCCGTGTACAAAGTATTGCCG
TTTTTACCGCGTTGGCAGAAGCAGAGGCAGCGACACATGGAGTGGGTATC
GACGAGATCCATTTTCATGAAGTTGGCGCAGTAGACAGCATCATTGACAC
AGTCGGTTCCGTCTTTGCCTTACATCTGCTCGGTGTTGAGGAGGTGTATT
CCTCCGCCTTGCCCTTTGGCGAGGGCTTCACCGGAGAGACAGCCCACGGG
ATCTTGGCTGTCCCTACCCCTGCCACCCTGCGGCTCATGCTCGGCTTGCC
TACCACCCCGGGTCCGAAGGGAGCGATGGGCGAGCTCGTCACACCAACAG
GGGCGTCTTTGATCAAGGTTTTGGCTGAGGGGAGAGTAGGACAGCCCCCG
ATTTTTGTACCTGAGTTGTTGGGGATCGGAGCGGGGACAAAGGATTTTCC
GGGCCATGCGAATGTGGTGAGGGTGGTGATTGGAAGGAGGCTGGAGGAAG
GGGAGGAGGGACGTGAGGGAGAGGTGGTCCGACGGGCGTCCTTTGATGCT
GGGGGGGAGGAGGATGGGATGGTACCCCGCACCCGTCGTCAGCAGCAGCA
CCCTCAATCACCTCTTCGTTACCTCTCCGAAAAAGGGGAGCCTTCCCATC
CAATCACCCGCCCTCCCGCCCTCCACCCCCCCACCACCCACACCACACAC
ACACATGCAATCCCACCTTCCTCGGGCTCTGCCTGGTCTTCCGGAGGATG
GGAAGAACGGCACTTGTGTGAATTGGAGGCCAACTTGGACGATATGACGC
CCGAAACTGCCTCTTTTGCCCTCGAGCGGTTAATGTCTGAGCCAGGCTGC
CTCGACGTCTGGTACACGCCCGCCGTTATGAAAAAAGGCCGCCCGGGCCT
GACCCTCCACCTTTTGTGTGAACCGGCCACTGCCCCTGCTCTCTTGCGGT
GCATGTTCTTGGAGACCCCCACCCTTGGGGTGAGGGCACATACCGTGGCG
AGGTTGGCGCTGGAGAGGGATTTCGTGATGGTGCCCACAAGATATGGAGA
GGTGCGGGCTAAAATAGGTCGAATGGACGGGGTGGTGGTGAATGTGAAAC
CGGAGTACGAAGATTGTAGGGGCGCCGCCATGGCGTTGGGCTTGCCCCTG
AGGGTGGTGGCGGAAGAGGCGGCAAGGGTAGCACGAGGACAGATGGATGA
TGAGGGAGGGAAGGAGGGAGGGAAGGAGGGGAGGATAGAGGAGGAGGGCC
AGGGGGAGAAGGGGAAGTGA back to top
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