jgi.p|Nanoce1779_2|536855, mRNA_1068 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|536855
Unique NamemRNA_1068
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1322
Alignment locationscaffold_2:1143385..1144796 -

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Properties
Property NameValue
TranscriptId536941
TrackFilteredModels2
ProteinId536855
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1143385..1144796 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|536855gene_1068Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|536855mRNA_1068-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1068CDS_1068Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1068 ID=mRNA_1068|Name=jgi.p|Nanoce1779_2|536855|organism=Nannochloropsis oceanica|type=mRNA|length=1322bp
ACACTGGCGATGCCGGCGACTAGTTGCACTGCACTATTGCATTGCAAGCC
CTTACGTCCAACCACTCGTCTACCAAACCTACAACAACCACAGGAGCGCG
CCACTCTCGATGGAGCTACAGTTGCGATAGTTGAACGGGTGCAGACAGGC
ACTGAAAAATAGACTTTAAAAGTTGCAGGGGGGGTCAGGAGGTCAAGGGG
GGGGTGATCGGCCGTCGCGAGGCAAACCCATCCTCAATTAGTCCCGACAT
ATAATGCTGTCCAGCTTCATCCAGCAGCTTGAGAAGCGATTCGGTGGTCG
TTTGGCTGACTTGGTGCGACCAAAACCCATCATCACGTCTTCGAGCCTAG
AACGAGAGCACTTGGACGAGTTGTTTAGCCATCGTGCCTGTTGTGTCCAT
GTTCAGGGATTCTACCCTCCCCAGGCCGCCAAAGAAATTGCGCGTCGCTT
GACTCTGGACCCAAACCGGCAGCTGGAATGGAAAGTGAGTAATCCTCGAA
AGGGTTTGGAAAGCTCCGACGTCCGGACGATTGGCTCGCAGCCATACAAC
ATGGTCGCGTCTTCAAGAAACAAGGCGGCAGAAGAGGCATATTTTGACGG
GGCGTTGGCGTGCATGCGGGAACTTCGGGAGGGCAGTGGCAGCAGCTTAC
CTTGCACAACCAGCAGCAGGGACGGACAAAGCCAAAAGCCAACCCCAGAG
CTTCCAGTGCTTGGCCCCTTAGATAAACTACGACTAGAACTCGACGAAAT
TTTTCCTGCTGGTGCTACCGTAGCTAAACATCCAAAAGACGGCCGACCAT
TCGTGGCTGGCCTCGCGCGTGTCATGCAAGGCCCAACCCAACATCTTGAA
GGGTTTATTCACTGCGATGATATTCATCCCCTCTCAGCCGATGAAGGTCT
CTTCAGTGCAAATCTCTACCTAGAACTTCCGTCCACAGGAGGCGGTGAAC
TCTTGATTTATGATATTGAAGTACGCTCGCGTTGGGAATTTTATACGAAC
GCCAGCACTCTCGCTCTCCTGACGCACCCGGGAGAAGCAGGCCAAGATAT
TCTCCGATCACGATTGCCCAAACCCAAGACCATCAAACCTGCATCTGGAG
ATTTGATTTTACTATGTGCCCAGCGACCGCACGCCGTGGCGGGGTTTCCC
CTCGGGACGCGCGTCAGCATCCAATCTTTCATATCGTTCAAGAAGGGTCA
GTCGCTGCAGCTTGACAACTGAAAAGAAATTTCAAGTGATATATTATAGG
AAATATGACCGAGTTTCACGGAAACCGTAATGTTTTTTTTAAAAAAAGAT
ATAAATAACCTCCCCACATTCG
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protein sequence of jgi.p|Nanoce1779_2|536855

>mRNA_1068-protein ID=mRNA_1068-protein|Name=jgi.p|Nanoce1779_2|536855|organism=Nannochloropsis oceanica|type=polypeptide|length=323bp
MLSSFIQQLEKRFGGRLADLVRPKPIITSSSLEREHLDELFSHRACCVHV
QGFYPPQAAKEIARRLTLDPNRQLEWKVSNPRKGLESSDVRTIGSQPYNM
VASSRNKAAEEAYFDGALACMRELREGSGSSLPCTTSSRDGQSQKPTPEL
PVLGPLDKLRLELDEIFPAGATVAKHPKDGRPFVAGLARVMQGPTQHLEG
FIHCDDIHPLSADEGLFSANLYLELPSTGGGELLIYDIEVRSRWEFYTNA
STLALLTHPGEAGQDILRSRLPKPKTIKPASGDLILLCAQRPHAVAGFPL
GTRVSIQSFISFKKGQSLQLDN*
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mRNA from alignment at scaffold_2:1143385..1144796-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1068 ID=mRNA_1068|Name=jgi.p|Nanoce1779_2|536855|organism=Nannochloropsis oceanica|type=mRNA|length=1412bp|location=Sequence derived from alignment at scaffold_2:1143385..1144796- (Nannochloropsis oceanica)
ACACTGGCGATGCCGGCGACTAGTTGCACTGCACTATTGCATTGCAAGCC
CTTACGTCCAACCACTCGTCTACCAAACCTACAACAACCACAGGAGCGCG
CCACTCTCGATGGAGCTACAGTTGCGATAGTTGAACGGGTGCAGACAGGC
ACTGAAAAATAGACTTTAAAAGTTGCAGGGGGGGTCAGGAGGTCAAGGGG
GGGGTGATCGGCCGTCGCGAGGCAAACCCATCCTCAATTAGTCCCGACAT
ATAATGCTGTCCAGCTTCATCCAGCAGCTTGAGAAGCGATTCGGTGGTCG
TTTGGCTGACTTGGTGCGACCAAAACCCATCATCACGTCTTCGAGCCTAG
AACGAGAGCACTTGGACGAGGTAGGCCAGAGTGGATGGATTACAGATACG
TTAACCCATCATCCACACGTCAGTCATCTGATATCATACCCGCCCCACAC
ATGTACACAGTTGTTTAGCCATCGTGCCTGTTGTGTCCATGTTCAGGGAT
TCTACCCTCCCCAGGCCGCCAAAGAAATTGCGCGTCGCTTGACTCTGGAC
CCAAACCGGCAGCTGGAATGGAAAGTGAGTAATCCTCGAAAGGGTTTGGA
AAGCTCCGACGTCCGGACGATTGGCTCGCAGCCATACAACATGGTCGCGT
CTTCAAGAAACAAGGCGGCAGAAGAGGCATATTTTGACGGGGCGTTGGCG
TGCATGCGGGAACTTCGGGAGGGCAGTGGCAGCAGCTTACCTTGCACAAC
CAGCAGCAGGGACGGACAAAGCCAAAAGCCAACCCCAGAGCTTCCAGTGC
TTGGCCCCTTAGATAAACTACGACTAGAACTCGACGAAATTTTTCCTGCT
GGTGCTACCGTAGCTAAACATCCAAAAGACGGCCGACCATTCGTGGCTGG
CCTCGCGCGTGTCATGCAAGGCCCAACCCAACATCTTGAAGGGTTTATTC
ACTGCGATGATATTCATCCCCTCTCAGCCGATGAAGGTCTCTTCAGTGCA
AATCTCTACCTAGAACTTCCGTCCACAGGAGGCGGTGAACTCTTGATTTA
TGATATTGAAGTACGCTCGCGTTGGGAATTTTATACGAACGCCAGCACTC
TCGCTCTCCTGACGCACCCGGGAGAAGCAGGCCAAGATATTCTCCGATCA
CGATTGCCCAAACCCAAGACCATCAAACCTGCATCTGGAGATTTGATTTT
ACTATGTGCCCAGCGACCGCACGCCGTGGCGGGGTTTCCCCTCGGGACGC
GCGTCAGCATCCAATCTTTCATATCGTTCAAGAAGGGTCAGTCGCTGCAG
CTTGACAACTGAAAAGAAATTTCAAGTGATATATTATAGGAAATATGACC
GAGTTTCACGGAAACCGTAATGTTTTTTTTAAAAAAAGATATAAATAACC
TCCCCACATTCG
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Coding sequence (CDS) from alignment at scaffold_2:1143385..1144796-

>mRNA_1068 ID=mRNA_1068|Name=jgi.p|Nanoce1779_2|536855|organism=Nannochloropsis oceanica|type=CDS|length=1938bp|location=Sequence derived from alignment at scaffold_2:1143385..1144796- (Nannochloropsis oceanica)
TTGTTTAGCCATCGTGCCTGTTGTGTCCATGTTCAGGGATTCTACCCTCC
CCAGGCCGCCAAAGAAATTGCGCGTCGCTTGACTCTGGACCCAAACCGGC
AGCTGGAATGGAAAGTGAGTAATCCTCGAAAGGGTTTGGAAAGCTCCGAC
GTCCGGACGATTGGCTCGCAGCCATACAACATGGTCGCGTCTTCAAGAAA
CAAGGCGGCAGAAGAGGCATATTTTGACGGGGCGTTGGCGTGCATGCGGG
AACTTCGGGAGGGCAGTGGCAGCAGCTTACCTTGCACAACCAGCAGCAGG
GACGGACAAAGCCAAAAGCCAACCCCAGAGCTTCCAGTGCTTGGCCCCTT
AGATAAACTACGACTAGAACTCGACGAAATTTTTCCTGCTGGTGCTACCG
TAGCTAAACATCCAAAAGACGGCCGACCATTCGTGGCTGGCCTCGCGCGT
GTCATGCAAGGCCCAACCCAACATCTTGAAGGGTTTATTCACTGCGATGA
TATTCATCCCCTCTCAGCCGATGAAGGTCTCTTCAGTGCAAATCTCTACC
TAGAACTTCCGTCCACAGGAGGCGGTGAACTCTTGATTTATGATATTGAA
GTACGCTCGCGTTGGGAATTTTATACGAACGCCAGCACTCTCGCTCTCCT
GACGCACCCGGGAGAAGCAGGCCAAGATATTCTCCGATCACGATTGCCCA
AACCCAAGACCATCAAACCTGCATCTGGAGATTTGATTTTACTATGTGCC
CAGCGACCGCACGCCGTGGCGGGGTTTCCCCTCGGGACGCGCGTCAGCAT
CCAATCTTTCATATCGTTCAAGAAGGGTCAGTCGCTGCAGCTTGACAACT
GAATGCTGTCCAGCTTCATCCAGCAGCTTGAGAAGCGATTCGGTGGTCGT
TTGGCTGACTTGGTGCGACCAAAACCCATCATCACGTCTTCGAGCCTAGA
ACGAGAGCACTTGGACGAGTTGTTTAGCCATCGTGCCTGTTGTGTCCATG
TTCAGGGATTCTACCCTCCCCAGGCCGCCAAAGAAATTGCGCGTCGCTTG
ACTCTGGACCCAAACCGGCAGCTGGAATGGAAAGTGAGTAATCCTCGAAA
GGGTTTGGAAAGCTCCGACGTCCGGACGATTGGCTCGCAGCCATACAACA
TGGTCGCGTCTTCAAGAAACAAGGCGGCAGAAGAGGCATATTTTGACGGG
GCGTTGGCGTGCATGCGGGAACTTCGGGAGGGCAGTGGCAGCAGCTTACC
TTGCACAACCAGCAGCAGGGACGGACAAAGCCAAAAGCCAACCCCAGAGC
TTCCAGTGCTTGGCCCCTTAGATAAACTACGACTAGAACTCGACGAAATT
TTTCCTGCTGGTGCTACCGTAGCTAAACATCCAAAAGACGGCCGACCATT
CGTGGCTGGCCTCGCGCGTGTCATGCAAGGCCCAACCCAACATCTTGAAG
GGTTTATTCACTGCGATGATATTCATCCCCTCTCAGCCGATGAAGGTCTC
TTCAGTGCAAATCTCTACCTAGAACTTCCGTCCACAGGAGGCGGTGAACT
CTTGATTTATGATATTGAAGTACGCTCGCGTTGGGAATTTTATACGAACG
CCAGCACTCTCGCTCTCCTGACGCACCCGGGAGAAGCAGGCCAAGATATT
CTCCGATCACGATTGCCCAAACCCAAGACCATCAAACCTGCATCTGGAGA
TTTGATTTTACTATGTGCCCAGCGACCGCACGCCGTGGCGGGGTTTCCCC
TCGGGACGCGCGTCAGCATCCAATCTTTCATATCGTTCAAGAAGGGTCAG
TCGCTGCAGCTTGACAACTGAATGCTGTCCAGCTTCATCCAGCAGCTTGA
GAAGCGATTCGGTGGTCGTTTGGCTGACTTGGTGCGACCAAAACCCATCA
TCACGTCTTCGAGCCTAGAACGAGAGCACTTGGACGAG
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Synonyms
Publications