jgi.p|Nanoce1779_2|575196, mRNA_1067 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575196
Unique NamemRNA_1067
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1045
Alignment locationscaffold_2:1141835..1143138 -

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Properties
Property NameValue
TranscriptId575282
TrackFilteredModels2
ProteinId575196
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1141835..1143138 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575196gene_1067Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575196mRNA_1067-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1067CDS_1067Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1067 ID=mRNA_1067|Name=jgi.p|Nanoce1779_2|575196|organism=Nannochloropsis oceanica|type=mRNA|length=1045bp
CAACAGACCATGATGCGGCATGTGGGGGGTTCCTTTCCTATCCTGCTCGT
AGCCGTCCTCCTCCTGCTTCCCATCTCCCAGGCCTTCCTTCCTCCGATGC
ATTTCTCCCTCTCATCCCCGATGTCCACGCGACGACATCGCCGCAGCTTC
TCCCTCCTGACAATGCAATCACTCCGCGATCAGTTCTTCGCGGCAGTAGA
CCACAACCTCAAAACCAAATTTTCCCCCGAGCAAGGCGACCTCTCCCGCA
TTCGTGCCTTCGTCGAGTCCTGTAAAGCTGGCTCCATTCCTCCCACTGCT
CCTACCGACCTCCCCTACTTCCAGCCCTCGGAAGAGTACGTCCCCGGCTT
GACCGCAAAGCCATGGCACGACCCCCATAGTTTTGAGTGGGTACAGGCCT
TGGAAGATGCGTCGCCCATCATCCAGGATGAGTTGAGGGGGGTGTTAGGC
GCGGGAAGGGATCCGCGGGATTTCAAAGGCGACTCCAACGTCATGACCGT
GATGGGCGCGGGCTGGACCGCCCTGCGCATGCAACGCCTCGGGCTATGGA
ACGACGACGTCTGTGCCCGTTTTCCTCGCACCCTCTCCTTGTTGGCTTCT
CTTTCTATACCTTTCGCAGTGCGAGGGGTGATGTTCGCGAGGCAAGCACC
GGGGACAGGTGTCCAACCCCACTCGGACGGTCGGAACTTTATCTTGACGC
TTCATTTGGGCCTCCAGGTGCCGAAGGAGGAAGGGTTGTGTTGGATGCGG
GTGGCGGAGGAGAGGCGGGGCTGGGAGGAAGGCAAGGCGGTGGTCATTGA
CACCACCTTTGAGCATGAGACAGGTAACGCGAGTGAGGAGGAGAGATACG
TCTTAATTATTGACTTTTGGCATCCAGAACTGACACCCGTGGAGAGGGCA
GCGTTAAGGGAGTTTTACGACTTGAGGAATACGTTCGAGGGGCGGACGGG
AGGAGGGGGAGTGGGGGAAGGGAGGCCACTACCGATGGAAAAGAGGAGGG
AGAAGAATGGAGGGTGGTTGGCAGGATTGTTTGGGGGATGAGAAA
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protein sequence of jgi.p|Nanoce1779_2|575196

>mRNA_1067-protein ID=mRNA_1067-protein|Name=jgi.p|Nanoce1779_2|575196|organism=Nannochloropsis oceanica|type=polypeptide|length=344bp
MMRHVGGSFPILLVAVLLLLPISQAFLPPMHFSLSSPMSTRRHRRSFSLL
TMQSLRDQFFAAVDHNLKTKFSPEQGDLSRIRAFVESCKAGSIPPTAPTD
LPYFQPSEEYVPGLTAKPWHDPHSFEWVQALEDASPIIQDELRGVLGAGR
DPRDFKGDSNVMTVMGAGWTALRMQRLGLWNDDVCARFPRTLSLLASLSI
PFAVRGVMFARQAPGTGVQPHSDGRNFILTLHLGLQVPKEEGLCWMRVAE
ERRGWEEGKAVVIDTTFEHETGNASEEERYVLIIDFWHPELTPVERAALR
EFYDLRNTFEGRTGGGGVGEGRPLPMEKRREKNGGWLAGLFGG*
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mRNA from alignment at scaffold_2:1141835..1143138-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1067 ID=mRNA_1067|Name=jgi.p|Nanoce1779_2|575196|organism=Nannochloropsis oceanica|type=mRNA|length=1304bp|location=Sequence derived from alignment at scaffold_2:1141835..1143138- (Nannochloropsis oceanica)
CAACAGACCATGATGCGGCATGTGGGGGGTTCCTTTCCTATCCTGCTCGT
AGCCGTCCTCCTCCTGCTTCCCATCTCCCAGGCCTTCCTTCCTCCGATGC
ATTTCTCCCTCTCATCCCCGATGTCCACGCGACGACATCGCCGCAGCTTC
TCCCTCCTGACAATGCAATCACTCCGCGATCAGTTCTTCGCGGCAGTAGA
CCACAACCTCAAAACCAAATTTTCCCCCGAGCAAGGCGACCTCTCCCGCA
TTCGTGCCTTCGTCGAGTCCTGTAAAGCTGGCTCCATTCCTCCCACTGCT
CCTACCGACCTCCCCTACTTCCAGCCCTCGGAAGAGTACGTCCCCGGCTT
GACCGCAAAGCCATGGCACGACCCCCATAGTTTTGAGTGGGTACAGGCCT
TGGAAGATGCGTCGCCCATCATCCAGGATGAGTTGAGGGGGGTGTTAGGC
GCGGGAAGGGATCCGCGGGATTTCAAAGGGTGAGTGAGCTGAATGCGGGT
GATACCGATTTCGAATGGGTTTTAACCGCAAGCTCTTTTAATTGAGAAGA
AAGATGCATTACGTACGCTTTCCAACACTATTATCCGCTCAATTTATCCC
CTATCTCTCTTCATCTCTCTTGTAGCGACTCCAACGTCATGACCGTGATG
GGCGCGGGCTGGACCGCCCTGCGCATGCAACGCCTCGGGCTATGGAACGA
CGACGTCTGTGCCCGTTTTCCTCGCACCCTCTCCTTGTTGGCTTCTCTTT
CTATACCTTTCGCAGTGCGAGGGGTGATGTTCGCGAGGCAAGCACCGGGG
ACAGGTGTCCAACCCCACTCGGACGGTCGGAACTTTATCTTGACGCTTCA
TTTGGGCCTCCAGGTGCCGAAGGAGGAAGGGTTGTGTTGGATGCGGGTGG
CGGAGGAGAGGCGGGGCTGGGAGGAAGGCAAGGCGGTGGTCATGTAAGTG
TAATTGAAATCGAACGATTTAATATCTGTACCATATATTTATATTCACAC
CACTTACCCTTTCCCTTCTCTTCCTCTCTTCGTCCCTCTTACCGTGTCCC
TCTTAGTGACACCACCTTTGAGCATGAGACAGGTAACGCGAGTGAGGAGG
AGAGATACGTCTTAATTATTGACTTTTGGCATCCAGAACTGACACCCGTG
GAGAGGGCAGCGTTAAGGGAGTTTTACGACTTGAGGAATACGTTCGAGGG
GCGGACGGGAGGAGGGGGAGTGGGGGAAGGGAGGCCACTACCGATGGAAA
AGAGGAGGGAGAAGAATGGAGGGTGGTTGGCAGGATTGTTTGGGGGATGA
GAAA
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Coding sequence (CDS) from alignment at scaffold_2:1141835..1143138-

>mRNA_1067 ID=mRNA_1067|Name=jgi.p|Nanoce1779_2|575196|organism=Nannochloropsis oceanica|type=CDS|length=3096bp|location=Sequence derived from alignment at scaffold_2:1141835..1143138- (Nannochloropsis oceanica)
TGACACCACCTTTGAGCATGAGACAGGTAACGCGAGTGAGGAGGAGAGAT
ACGTCTTAATTATTGACTTTTGGCATCCAGAACTGACACCCGTGGAGAGG
GCAGCGTTAAGGGAGTTTTACGACTTGAGGAATACGTTCGAGGGGCGGAC
GGGAGGAGGGGGAGTGGGGGAAGGGAGGCCACTACCGATGGAAAAGAGGA
GGGAGAAGAATGGAGGGTGGTTGGCAGGATTGTTTGGGGGATGACGACTC
CAACGTCATGACCGTGATGGGCGCGGGCTGGACCGCCCTGCGCATGCAAC
GCCTCGGGCTATGGAACGACGACGTCTGTGCCCGTTTTCCTCGCACCCTC
TCCTTGTTGGCTTCTCTTTCTATACCTTTCGCAGTGCGAGGGGTGATGTT
CGCGAGGCAAGCACCGGGGACAGGTGTCCAACCCCACTCGGACGGTCGGA
ACTTTATCTTGACGCTTCATTTGGGCCTCCAGGTGCCGAAGGAGGAAGGG
TTGTGTTGGATGCGGGTGGCGGAGGAGAGGCGGGGCTGGGAGGAAGGCAA
GGCGGTGGTCATATGATGCGGCATGTGGGGGGTTCCTTTCCTATCCTGCT
CGTAGCCGTCCTCCTCCTGCTTCCCATCTCCCAGGCCTTCCTTCCTCCGA
TGCATTTCTCCCTCTCATCCCCGATGTCCACGCGACGACATCGCCGCAGC
TTCTCCCTCCTGACAATGCAATCACTCCGCGATCAGTTCTTCGCGGCAGT
AGACCACAACCTCAAAACCAAATTTTCCCCCGAGCAAGGCGACCTCTCCC
GCATTCGTGCCTTCGTCGAGTCCTGTAAAGCTGGCTCCATTCCTCCCACT
GCTCCTACCGACCTCCCCTACTTCCAGCCCTCGGAAGAGTACGTCCCCGG
CTTGACCGCAAAGCCATGGCACGACCCCCATAGTTTTGAGTGGGTACAGG
CCTTGGAAGATGCGTCGCCCATCATCCAGGATGAGTTGAGGGGGGTGTTA
GGCGCGGGAAGGGATCCGCGGGATTTCAAAGGTGACACCACCTTTGAGCA
TGAGACAGGTAACGCGAGTGAGGAGGAGAGATACGTCTTAATTATTGACT
TTTGGCATCCAGAACTGACACCCGTGGAGAGGGCAGCGTTAAGGGAGTTT
TACGACTTGAGGAATACGTTCGAGGGGCGGACGGGAGGAGGGGGAGTGGG
GGAAGGGAGGCCACTACCGATGGAAAAGAGGAGGGAGAAGAATGGAGGGT
GGTTGGCAGGATTGTTTGGGGGATGACGACTCCAACGTCATGACCGTGAT
GGGCGCGGGCTGGACCGCCCTGCGCATGCAACGCCTCGGGCTATGGAACG
ACGACGTCTGTGCCCGTTTTCCTCGCACCCTCTCCTTGTTGGCTTCTCTT
TCTATACCTTTCGCAGTGCGAGGGGTGATGTTCGCGAGGCAAGCACCGGG
GACAGGTGTCCAACCCCACTCGGACGGTCGGAACTTTATCTTGACGCTTC
ATTTGGGCCTCCAGGTGCCGAAGGAGGAAGGGTTGTGTTGGATGCGGGTG
GCGGAGGAGAGGCGGGGCTGGGAGGAAGGCAAGGCGGTGGTCATATGATG
CGGCATGTGGGGGGTTCCTTTCCTATCCTGCTCGTAGCCGTCCTCCTCCT
GCTTCCCATCTCCCAGGCCTTCCTTCCTCCGATGCATTTCTCCCTCTCAT
CCCCGATGTCCACGCGACGACATCGCCGCAGCTTCTCCCTCCTGACAATG
CAATCACTCCGCGATCAGTTCTTCGCGGCAGTAGACCACAACCTCAAAAC
CAAATTTTCCCCCGAGCAAGGCGACCTCTCCCGCATTCGTGCCTTCGTCG
AGTCCTGTAAAGCTGGCTCCATTCCTCCCACTGCTCCTACCGACCTCCCC
TACTTCCAGCCCTCGGAAGAGTACGTCCCCGGCTTGACCGCAAAGCCATG
GCACGACCCCCATAGTTTTGAGTGGGTACAGGCCTTGGAAGATGCGTCGC
CCATCATCCAGGATGAGTTGAGGGGGGTGTTAGGCGCGGGAAGGGATCCG
CGGGATTTCAAAGGTGACACCACCTTTGAGCATGAGACAGGTAACGCGAG
TGAGGAGGAGAGATACGTCTTAATTATTGACTTTTGGCATCCAGAACTGA
CACCCGTGGAGAGGGCAGCGTTAAGGGAGTTTTACGACTTGAGGAATACG
TTCGAGGGGCGGACGGGAGGAGGGGGAGTGGGGGAAGGGAGGCCACTACC
GATGGAAAAGAGGAGGGAGAAGAATGGAGGGTGGTTGGCAGGATTGTTTG
GGGGATGACGACTCCAACGTCATGACCGTGATGGGCGCGGGCTGGACCGC
CCTGCGCATGCAACGCCTCGGGCTATGGAACGACGACGTCTGTGCCCGTT
TTCCTCGCACCCTCTCCTTGTTGGCTTCTCTTTCTATACCTTTCGCAGTG
CGAGGGGTGATGTTCGCGAGGCAAGCACCGGGGACAGGTGTCCAACCCCA
CTCGGACGGTCGGAACTTTATCTTGACGCTTCATTTGGGCCTCCAGGTGC
CGAAGGAGGAAGGGTTGTGTTGGATGCGGGTGGCGGAGGAGAGGCGGGGC
TGGGAGGAAGGCAAGGCGGTGGTCATATGATGCGGCATGTGGGGGGTTCC
TTTCCTATCCTGCTCGTAGCCGTCCTCCTCCTGCTTCCCATCTCCCAGGC
CTTCCTTCCTCCGATGCATTTCTCCCTCTCATCCCCGATGTCCACGCGAC
GACATCGCCGCAGCTTCTCCCTCCTGACAATGCAATCACTCCGCGATCAG
TTCTTCGCGGCAGTAGACCACAACCTCAAAACCAAATTTTCCCCCGAGCA
AGGCGACCTCTCCCGCATTCGTGCCTTCGTCGAGTCCTGTAAAGCTGGCT
CCATTCCTCCCACTGCTCCTACCGACCTCCCCTACTTCCAGCCCTCGGAA
GAGTACGTCCCCGGCTTGACCGCAAAGCCATGGCACGACCCCCATAGTTT
TGAGTGGGTACAGGCCTTGGAAGATGCGTCGCCCATCATCCAGGATGAGT
TGAGGGGGGTGTTAGGCGCGGGAAGGGATCCGCGGGATTTCAAAGG
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Synonyms
Publications