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Properties
| Property Name | Value |
|---|
| TranscriptId | 612208 |
| Track | FilteredModels2 |
| ProteinId | 612122 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_61 | supercontig | scaffold_61:88362..90907 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_10667 ID=mRNA_10667|Name=jgi.p|Nanoce1779_2|612122|organism=Nannochloropsis oceanica|type=mRNA|length=1790bp
TGCGCGCGTTTGCTCTTGCTCTGGGGGGAGGCCGTCAGGGAGGAAGGGAG
GAAGGAAAGGAAGGAGGGAGTGATGAAGCACCAGCAGGAGCAATGGAAAC
GCCACCAGCGGCTCGAGCAGGCGCACCACCATCAGCATCGTTCTTCTGTT
GGGGAGAGACCCACATCCGGATTTGCCTTATTACAGCAGCAGCAACAGCA
GCAGCGTGAGCCAGACGCTCAGATCACCCCACACATCCATACCTCTCTCT
TTGCGACTGCAGCCCCCACCGCGCCCCTTTCCATCGCTTCCCCCCATCAG
GAAGGGAAGGAGGCGGAGGCGGAGGCGGAAGCGAGGAACGAGGGACGGAG
GCTGGGGAAAGGGGAAAGGAAGCACGAAAGATTTGTGTGGGTGGCTCTAG
ACATGACAAGACTGCACTGGCGGAAGGAGAGGAAGGGAGAAAAAAAGGGA
GGGAATAAGGGGGAGGACGAGGGAGAGCATAAAAATGGCAATCCTCCTAT
TTCTTCCTCGTTCCTTGTTCTTTCAGACTGCCAGCGTGTAGCCGCTGGTC
GTGACGGCGAGAGAGGGGAAAAGGAGGGGAAAAGGGAGGAAGAGAAGGGT
GTCTTTTTCACCCTGTACAGTCACGACCGCTACGTCACATTTGAGGTCCC
TCCGTCCCCTCATGCCAAGCGAACAAGAAACGCCTGGGTTGCAGCCTTAG
CCTCTGTCCTCCAGCAACAGCAACTACAGTCGCAGGCCCTCTCTCCCTCA
CGATCCCCCCCCCTCCCTTGTCTTTCTCCTGTTCCACGAAAGACGTTGAC
GCGGTCGAAAGCGTCCAGACCTGCCATGAACCTCGCTGTGCATCCCGTAC
CGCGCGAGGAGCAGAAGATGAAAGAGGCAGGGCACAGGAGAGAGGAGGGA
AAGGAGGGCGACCCTGCCACCAGCACCACCACCGACAGCAGCATAAGGAG
AAACACCGGCAGGCGGACTGGCAGAAGCGATGGCAACACATGTGATGCAC
TCCTCCTCTCCTTCCTCCTCTTTCCTCCCTGCCCTTCTCCCAGCCGTCCT
CGTCCTCCATTCGTCCCTCCAAAATCTCAATACCACTACCATATTTTGAG
GCGAGCGAGGCGAACCCCTCCGTCCCTTCCCCCCTCCATCGACTCCAATT
ACCCAATGCAATTACCTCTCCCAGAGTAAACTGGCGATTGGGAAGACAAT
TTGAAGATCCTGCAATCTGGAGGACGGAAAGGACGAGCAGAAGGAGAGAG
GGTAGGAACTACGGTCAGGGGCTTCAGCCTCACCACCTCTGTTTCCCCCT
CGGCCTCCTCCTTCCTTGGGTCATCGTGCGGAAGCTTAAGGGACCAGCAG
CCCTGCTCCTAAAATGTCCTCTCCACCGCCACTACTACCACCACCTCTCC
CTCCATCTCTTCCTGCCCCTCCTCGCGTCCTTTTCTCCAGCGCAGCAACT
CTCAGACTGTCACTGTCCCCCCTGCCTCTCCCTTTCTTCGTCGGCCTCCC
TCTCTTCCTACCCCCCCCATGACATCGAACAAATCAAGATCAAGGAGGGA
AGGAGACACATGTACCTTATTCTTCGTCACGGACAAGAGGGGAAGAGGTT
GAGAGCGCGGCTCGAGTAAAGCTCGAGTCGCGACCTGCTTTTTACGGAAA
GTGAGATGATACTGTGAAAGCGTCAGCGTGTGAGTGAGGGAAGAATATTG
ACTATTGGATGAAATTGTATAAATCGAAACGGTTTGGACACGCTTCTCTT
TAGTGTAGATGTGCTCTAGGATGGGGTCGAGTGGCCTGCC back to topprotein sequence of jgi.p|Nanoce1779_2|612122 >mRNA_10667-protein ID=mRNA_10667-protein|Name=jgi.p|Nanoce1779_2|612122|organism=Nannochloropsis oceanica|type=polypeptide|length=369bp
MKHQQEQWKRHQRLEQAHHHQHRSSVGERPTSGFALLQQQQQQQREPDAQ
ITPHIHTSLFATAAPTAPLSIASPHQEGKEAEAEAEARNEGRRLGKGERK
HERFVWVALDMTRLHWRKERKGEKKGGNKGEDEGEHKNGNPPISSSFLVL
SDCQRVAAGRDGERGEKEGKREEEKGVFFTLYSHDRYVTFEVPPSPHAKR
TRNAWVAALASVLQQQQLQSQALSPSRSPPLPCLSPVPRKTLTRSKASRP
AMNLAVHPVPREEQKMKEAGHRREEGKEGDPATSTTTDSSIRRNTGRRTG
RSDGNTCDALLLSFLLFPPCPSPSRPRPPFVPPKSQYHYHILRRARRTPP
SLPPSIDSNYPMQLPLPE* back to topmRNA from alignment at scaffold_61:88362..90907- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_10667 ID=mRNA_10667|Name=jgi.p|Nanoce1779_2|612122|organism=Nannochloropsis oceanica|type=mRNA|length=2546bp|location=Sequence derived from alignment at scaffold_61:88362..90907- (Nannochloropsis oceanica)
TGCGCGCGTTTGCTCTTGCTCTGGGGGGAGGCCGTCAGGGAGGAAGGGAG
GAAGGAAAGGAAGGAGGGAGTGATGAAGCACCAGCAGGAGCAATGGAAAC
GCCACCAGCGGCTCGAGCAGGCGCACCACCATCAGCATCGTTCTTCTGTT
GGGGAGAGACCCACATCCGGATTTGCCTTATTACAGCAGCAGCAACAGCA
GCAGCGTGAGCCAGACGCTCAGATCACCCCACACATCCATACCTCTCTCT
TTGCGACTGCAGCCCCCACCGCGCCCCTTTCCATCGCTTCCCCCCATCAG
GAAGGGAAGGAGGCGGAGGCGGAGGCGGAAGCGAGGAACGAGGGACGGAG
GGTCAGGGGGCTACTGCAGCAGGGGCATGTCTTTTTCAAGCTGGGGAAAG
GGGAAAGGAAGCACGAAAGATTTGTGTGGGTGGCTCTAGACATGACAAGA
CTGCACTGGCGGAAGGAGAGGAAGGGAGAAAAAAAGGGAGGGAATAAGGG
GGAGGACGAGGGAGAGCATAAAAATGGCAATCCTCCTATTTCTTCCTCGT
TCCTTGTTCTTTCAGACTGCCAGCGTGTAGCCGCTGGTCGTGACGGCGAG
AGAGGGGAAAAGGAGGGGAAAAGGGAGGAAGAGAAGGGTGTCTTTTTCAC
CCTGTACAGTCACGACCGCTACGTCACATTTGAGGTCCCTCCGTCCCCTC
ATGCCAAGCGAACAAGAAACGCCTGGGTTGCAGCCTTAGCCTCTGTCCTC
CAGCAACAGCAACTACAGTCGCAGGCCCTCTCTCCCTCACGATCCCCCCC
CCTCCCTTGTCTTTCTCCTGTTCCACGAAAGACGTTGACGCGGTCGAAAG
CGTCCAGACCTGCCATGAACCTCGCTGTGCATCCCGTACCGCGCGAGGAG
CAGAAGATGAAAGAGGCAGGGCACAGGAGAGAGGAGGGAAAGGAGGGCGA
CCCTGCCACCAGCACCACCACCGACAGCAGCATAAGGAGGTCAAGGAGGG
GGAGGAGGAGATGATACGGCAGCAGCAGGTGGGACAACAGCAGCAGCGGT
ACAGTCCACCGCTGGGCCTCTTTGCAACCGAGCATCTTGACCAGGAACAA
CGACAAGAATACCATTCAAGCAGCATCCCTCTCTCTCCCTGCCTCCCTCC
GAGGAGCCATCGCGGTATATCTACCCCCCTCCCTCGCAGTTGCAGCCCGT
CCTGTCCTCAACCCATGGTCGTCAATACCAGCAGCAAGCGAAAGAGTGCC
ATGGGCAAGTGTCTGTGGCTCAATCTTCCGTCCCCTCTTCGTTACACCCT
CATCGGCCTACTGTTACTTCTTCTCCACCTTGTTCTTCCCTGCAGGAGCA
GCAGCAGCACCAGCACCAGCACCAGCAGTACCAAGGGAAAATTGAGGAGG
GTGGGTATAGCCAGGATCACGATCGAGGGCATCAGCAGCAGCAGAAATCA
TCGGTTGCCCATCGCTATCCAATTTACCCACCCCTTTCATCTTTCTCTTC
CAAATGTCCTTCCTCCCGCCATCATCTCCCGCACCAGCAGCACCAAAAGG
GGCAAGGCGGAGAAGAAGAACCTCGCGCAAGTACGACAGAAACGGATGAC
AGTGAAAAGAAGGTGGAGAGCCCCCAGGCCGGAGTCTACCCCATCTATCC
TCCTCCGCCTGTTGGTGTTCCTCCCTCCTACTTCTATACCCTTCCCATCC
CCATAGAAACACCGGCAGGCGGACTGGCAGAAGCGATGGCAACACATGTG
ATGCACTCCTCCTCTCCTTCCTCCTCTTTCCTCCCTGCCCTTCTCCCAGC
CGTCCTCGTCCTCCATTCGTCCCTCCAAAATCTCAATACCACTACCATAT
TTTGAGGCGAGCGAGGCGAACCCCTCCGTCCCTTCCCCCCTCCATCGACT
CCAATTACCCAATGCAATTACCTCTCCCAGAGTAAACTGGCGATTGGGAA
GACAATTTGAAGATCCTGCAATCTGGAGGACGGAAAGGACGAGCAGAAGG
AGAGAGGGTAGGAACTACGGTCAGGGGCTTCAGCCTCACCACCTCTGTTT
CCCCCTCGGCCTCCTCCTTCCTTGGGTCATCGTGCGGAAGCTTAAGGGAC
CAGCAGCCCTGCTCCTAAAATGTCCTCTCCACCGCCACTACTACCACCAC
CTCTCCCTCCATCTCTTCCTGCCCCTCCTCGCGTCCTTTTCTCCAGCGCA
GCAACTCTCAGACTGTCACTGTCCCCCCTGCCTCTCCCTTTCTTCGTCGG
CCTCCCTCTCTTCCTACCCCCCCCATGACATCGAACAAATCAAGATCAAG
GAGGGAAGGAGACACATGTACCTTATTCTTCGTCACGGACAAGAGGGGAA
GAGGTTGAGAGCGCGGCTCGAGTAAAGCTCGAGTCGCGACCTGCTTTTTA
CGGAAAGTGAGATGATACTGTGAAAGCGTCAGCGTGTGAGTGAGGGAAGA
ATATTGACTATTGGATGAAATTGTATAAATCGAAACGGTTTGGACACGCT
TCTCTTTAGTGTAGATGTGCTCTAGGATGGGGTCGAGTGGCCTGCC back to topCoding sequence (CDS) from alignment at scaffold_61:88362..90907- >mRNA_10667 ID=mRNA_10667|Name=jgi.p|Nanoce1779_2|612122|organism=Nannochloropsis oceanica|type=CDS|length=3321bp|location=Sequence derived from alignment at scaffold_61:88362..90907- (Nannochloropsis oceanica)
AAACACCGGCAGGCGGACTGGCAGAAGCGATGGCAACACATGTGATGCAC
TCCTCCTCTCCTTCCTCCTCTTTCCTCCCTGCCCTTCTCCCAGCCGTCCT
CGTCCTCCATTCGTCCCTCCAAAATCTCAATACCACTACCATATTTTGAG
GCGAGCGAGGCGAACCCCTCCGTCCCTTCCCCCCTCCATCGACTCCAATT
ACCCAATGCAATTACCTCTCCCAGAGTAACTGGGGAAAGGGGAAAGGAAG
CACGAAAGATTTGTGTGGGTGGCTCTAGACATGACAAGACTGCACTGGCG
GAAGGAGAGGAAGGGAGAAAAAAAGGGAGGGAATAAGGGGGAGGACGAGG
GAGAGCATAAAAATGGCAATCCTCCTATTTCTTCCTCGTTCCTTGTTCTT
TCAGACTGCCAGCGTGTAGCCGCTGGTCGTGACGGCGAGAGAGGGGAAAA
GGAGGGGAAAAGGGAGGAAGAGAAGGGTGTCTTTTTCACCCTGTACAGTC
ACGACCGCTACGTCACATTTGAGGTCCCTCCGTCCCCTCATGCCAAGCGA
ACAAGAAACGCCTGGGTTGCAGCCTTAGCCTCTGTCCTCCAGCAACAGCA
ACTACAGTCGCAGGCCCTCTCTCCCTCACGATCCCCCCCCCTCCCTTGTC
TTTCTCCTGTTCCACGAAAGACGTTGACGCGGTCGAAAGCGTCCAGACCT
GCCATGAACCTCGCTGTGCATCCCGTACCGCGCGAGGAGCAGAAGATGAA
AGAGGCAGGGCACAGGAGAGAGGAGGGAAAGGAGGGCGACCCTGCCACCA
GCACCACCACCGACAGCAGCATAAGGAGATGAAGCACCAGCAGGAGCAAT
GGAAACGCCACCAGCGGCTCGAGCAGGCGCACCACCATCAGCATCGTTCT
TCTGTTGGGGAGAGACCCACATCCGGATTTGCCTTATTACAGCAGCAGCA
ACAGCAGCAGCGTGAGCCAGACGCTCAGATCACCCCACACATCCATACCT
CTCTCTTTGCGACTGCAGCCCCCACCGCGCCCCTTTCCATCGCTTCCCCC
CATCAGGAAGGGAAGGAGGCGGAGGCGGAGGCGGAAGCGAGGAACGAGGG
ACGGAGGAAACACCGGCAGGCGGACTGGCAGAAGCGATGGCAACACATGT
GATGCACTCCTCCTCTCCTTCCTCCTCTTTCCTCCCTGCCCTTCTCCCAG
CCGTCCTCGTCCTCCATTCGTCCCTCCAAAATCTCAATACCACTACCATA
TTTTGAGGCGAGCGAGGCGAACCCCTCCGTCCCTTCCCCCCTCCATCGAC
TCCAATTACCCAATGCAATTACCTCTCCCAGAGTAACTGGGGAAAGGGGA
AAGGAAGCACGAAAGATTTGTGTGGGTGGCTCTAGACATGACAAGACTGC
ACTGGCGGAAGGAGAGGAAGGGAGAAAAAAAGGGAGGGAATAAGGGGGAG
GACGAGGGAGAGCATAAAAATGGCAATCCTCCTATTTCTTCCTCGTTCCT
TGTTCTTTCAGACTGCCAGCGTGTAGCCGCTGGTCGTGACGGCGAGAGAG
GGGAAAAGGAGGGGAAAAGGGAGGAAGAGAAGGGTGTCTTTTTCACCCTG
TACAGTCACGACCGCTACGTCACATTTGAGGTCCCTCCGTCCCCTCATGC
CAAGCGAACAAGAAACGCCTGGGTTGCAGCCTTAGCCTCTGTCCTCCAGC
AACAGCAACTACAGTCGCAGGCCCTCTCTCCCTCACGATCCCCCCCCCTC
CCTTGTCTTTCTCCTGTTCCACGAAAGACGTTGACGCGGTCGAAAGCGTC
CAGACCTGCCATGAACCTCGCTGTGCATCCCGTACCGCGCGAGGAGCAGA
AGATGAAAGAGGCAGGGCACAGGAGAGAGGAGGGAAAGGAGGGCGACCCT
GCCACCAGCACCACCACCGACAGCAGCATAAGGAGATGAAGCACCAGCAG
GAGCAATGGAAACGCCACCAGCGGCTCGAGCAGGCGCACCACCATCAGCA
TCGTTCTTCTGTTGGGGAGAGACCCACATCCGGATTTGCCTTATTACAGC
AGCAGCAACAGCAGCAGCGTGAGCCAGACGCTCAGATCACCCCACACATC
CATACCTCTCTCTTTGCGACTGCAGCCCCCACCGCGCCCCTTTCCATCGC
TTCCCCCCATCAGGAAGGGAAGGAGGCGGAGGCGGAGGCGGAAGCGAGGA
ACGAGGGACGGAGGAAACACCGGCAGGCGGACTGGCAGAAGCGATGGCAA
CACATGTGATGCACTCCTCCTCTCCTTCCTCCTCTTTCCTCCCTGCCCTT
CTCCCAGCCGTCCTCGTCCTCCATTCGTCCCTCCAAAATCTCAATACCAC
TACCATATTTTGAGGCGAGCGAGGCGAACCCCTCCGTCCCTTCCCCCCTC
CATCGACTCCAATTACCCAATGCAATTACCTCTCCCAGAGTAACTGGGGA
AAGGGGAAAGGAAGCACGAAAGATTTGTGTGGGTGGCTCTAGACATGACA
AGACTGCACTGGCGGAAGGAGAGGAAGGGAGAAAAAAAGGGAGGGAATAA
GGGGGAGGACGAGGGAGAGCATAAAAATGGCAATCCTCCTATTTCTTCCT
CGTTCCTTGTTCTTTCAGACTGCCAGCGTGTAGCCGCTGGTCGTGACGGC
GAGAGAGGGGAAAAGGAGGGGAAAAGGGAGGAAGAGAAGGGTGTCTTTTT
CACCCTGTACAGTCACGACCGCTACGTCACATTTGAGGTCCCTCCGTCCC
CTCATGCCAAGCGAACAAGAAACGCCTGGGTTGCAGCCTTAGCCTCTGTC
CTCCAGCAACAGCAACTACAGTCGCAGGCCCTCTCTCCCTCACGATCCCC
CCCCCTCCCTTGTCTTTCTCCTGTTCCACGAAAGACGTTGACGCGGTCGA
AAGCGTCCAGACCTGCCATGAACCTCGCTGTGCATCCCGTACCGCGCGAG
GAGCAGAAGATGAAAGAGGCAGGGCACAGGAGAGAGGAGGGAAAGGAGGG
CGACCCTGCCACCAGCACCACCACCGACAGCAGCATAAGGAGATGAAGCA
CCAGCAGGAGCAATGGAAACGCCACCAGCGGCTCGAGCAGGCGCACCACC
ATCAGCATCGTTCTTCTGTTGGGGAGAGACCCACATCCGGATTTGCCTTA
TTACAGCAGCAGCAACAGCAGCAGCGTGAGCCAGACGCTCAGATCACCCC
ACACATCCATACCTCTCTCTTTGCGACTGCAGCCCCCACCGCGCCCCTTT
CCATCGCTTCCCCCCATCAGGAAGGGAAGGAGGCGGAGGCGGAGGCGGAA
GCGAGGAACGAGGGACGGAGG back to top
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