jgi.p|Nanoce1779_2|612101, mRNA_10665 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|612101
Unique Name	mRNA_10665
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1742
Alignment location	scaffold_61:76670..78836 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	612187
Track	FilteredModels2
ProteinId	612101

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_61	supercontig	scaffold_61:76670..78836 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|612101	gene_10665	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|612101	mRNA_10665-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10665	CDS_10665	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_61:76670..78836+
coding sequence from alignment at scaffold_61:76670..78836+

mRNA sequence

>mRNA_10665 ID=mRNA_10665|Name=jgi.p|Nanoce1779_2|612101|organism=Nannochloropsis oceanica|type=mRNA|length=1742bp
ACAGCTATGCCCGATGCCACCGCCAACCCCCAAAGATGAGGTCAAGTACT
GCCCGCAGCACGTATCCCTGCAAGCTTTCCCGGCCTTGTCTTCTTCCTCT
TCCTCCTGTTGTTGCTTCTCCTGCTCCTCATCCTCCTGCTCCTCCTCTAC
TTGTCACTCTCAAGCCAACGTCGCCGCCAATAGTAGTACTTCATCATCAC
ATGAGGCATCGGCTTGGAAATATAAGGTCGTACGAGGCTCTCTGTATGTC
GTGGGCCCTGCAATCGAGACCTTAGCCGAGGCAGGACATGCATACTGCAT
GGACCATACTACCAGTGCCGCTGCGGCGCCTGCTTGTGATATTATGCCGT
CCCTAATACAAGCTGAAGACATAGCCTTCTTTGCTGATGCACGGAGACGT
CGTGCACAGCGCGATGGCCCCGCCCACCATCTCACGCTCCTGCACCGAAC
CGAAATTCAGGCGGAGGGTGAGAAGGAGGCCGGAATCGAGGACTGTGGAG
GGAGAGACAGAGACGACAATACAGCAAGTGCTGTTGATACTCCTGCTCCT
ACTCCTACTTCACCTACATCTACGGGCGCTTCCATTCCGTGCAAGCCCGA
GAGGAAAAAGAGGGTGGACGAAAATGAGCTGCTCTCGTCAGCTCCCTCTC
GGCGTAGCTCCCACGCCACCACCATGCCCGAGGACAAGGCCAAGGGCGAC
GAGAAAGAGACCCAGGAGCAAGAGGGGACGAAGATAATGAGAAAAGGAGC
AGATCCATACAACAGTACGGAAGGGGTGCCACGTTCGTTTTCTTCCCCTT
CCTCTTCCATGGACCGCTACAAGGACGACGACAAAGACGAGGCGTTCGCT
TCCGCCCTGCTTGCCATGTTGACCCTTCTCCTGAACACAAACCTCCTCCC
TCACATACCTCCCCTCCTATATGACCCTCTACCTCTTTATGTCTACCGGA
CAAGTGGGGAGGGGCGAGCGCTGGCGATGTCGGTCCTGTTCTTGCCGGGG
GAGTGGCTTCGGTATTGGCAAGGGCGGGTAAGGAGGGGAGGAAGAAAGGC
ATATCATCCCTTGCACGTAACCCTGGGCTTTGAGAGGCAGGACGAGCGGG
ACCAAGAGGCGCGGCGCTGGGGGCGGGTCCGTGTGCTGGGATATGGTTTG
TCAAGGCGGAGGACGGCAGAGGTTTTGGAGGCATTGGTAAATGTGCTCGT
GAAAGGAGAAGGAGAAGGAGAAGGGAGGAAAGGAGGACAATTGGGTACTT
TTCTTCCTCGGGTTCGAGATTTGGCGGTTGAGGTCATGCGTGTGCTGGAA
AGGAGGATAGAGGGAAGAACGGAGGGCGGTCGGGAGAATGAGGAGGAGAA
TGAGGAGGAGGTGGAAGAGGAGGAGGAGGAAGTGAGGGAGATCACGGCCA
CACTCACGGCCTGCAGGCGGATACTTGATTCTATGGCGGGCGGGTCGGCG
TCGGGTTTGTGTTGGCAAGGGAAAGAGGAGGAGAAAGAGACACCTTTACC
GTTGGAGCTTGCGACAGGTGGGTCGTCGCTTGTCAGATATGCAGCTCGAG
GACGTGGGTGCCTTTGAGAGCAGCAGCTGGATCGCTACCAAGGCACCCAG
ATGGGCGTATATGTAATAAGACTGACGAGGAGGGAGAGAGGTAGGCCCTG
GAAATTGTGCCTGTTCACATATCAAGTAGCCATGAGAGATGGAGACCCCT
GCCGGCCTTCAAACCACAACACAAGGAAGCACACCAACCGAC

protein sequence of jgi.p|Nanoce1779_2|612101

>mRNA_10665-protein ID=mRNA_10665-protein|Name=jgi.p|Nanoce1779_2|612101|organism=Nannochloropsis oceanica|type=polypeptide|length=518bp
MPPPTPKDEVKYCPQHVSLQAFPALSSSSSSCCCFSCSSSSCSSSTCHSQ
ANVAANSSTSSSHEASAWKYKVVRGSLYVVGPAIETLAEAGHAYCMDHTT
SAAAAPACDIMPSLIQAEDIAFFADARRRRAQRDGPAHHLTLLHRTEIQA
EGEKEAGIEDCGGRDRDDNTASAVDTPAPTPTSPTSTGASIPCKPERKKR
VDENELLSSAPSRRSSHATTMPEDKAKGDEKETQEQEGTKIMRKGADPYN
STEGVPRSFSSPSSSMDRYKDDDKDEAFASALLAMLTLLLNTNLLPHIPP
LLYDPLPLYVYRTSGEGRALAMSVLFLPGEWLRYWQGRVRRGGRKAYHPL
HVTLGFERQDERDQEARRWGRVRVLGYGLSRRRTAEVLEALVNVLVKGEG
EGEGRKGGQLGTFLPRVRDLAVEVMRVLERRIEGRTEGGRENEEENEEEV
EEEEEEVREITATLTACRRILDSMAGGSASGLCWQGKEEEKETPLPLELA
TGGSSLVRYAARGRGCL*

mRNA from alignment at scaffold_61:76670..78836+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10665 ID=mRNA_10665|Name=jgi.p|Nanoce1779_2|612101|organism=Nannochloropsis oceanica|type=mRNA|length=2167bp|location=Sequence derived from alignment at scaffold_61:76670..78836+ (Nannochloropsis oceanica)
ACAGCTATGCCCGATGCCACCGCCAACCCCCAAAGATGAGGTCAAGTACT
GCCCGCAGCACGTATCCCTGCAAGCTTTCCCGGCCTTGTCTTCTTCCTCT
TCCTCCTGTTGTTGCTTCTCCTGCTCCTCATCCTCCTGCTCCTCCTCTAC
TTGTCACTCTCAAGCCAACGTCGCCGCCAATAGTAGTACTTCATCATCAC
ATGAGGCATCGGCTTGGAAATATAAGGTCGTACGAGGCTCTCTGTATGTC
GTGGGCCCTGCAATCGAGACCTTAGCCGAGGCAGGACATGCATACTGCAT
GGACCATACTACCAGTGCCGCTGCGGCGCCTGCTTGTGATATTATGCCGT
CCCTAATACAAGGTAGGTGAATGGTTGAAGATGAGAAGATGGACGAGAGA
AGGAAAAAAGTATTTAGTAAACTGTGCCCCCACTTACCACCACTTCATTT
TCTTTGTTCATGACTCTTTCCGTCCCTCATTCGCCTTCCCCCGCCTCGTT
CCCTCCCTCCTTCTCGCACTCGACGTACGTCCCACCCTCTTCAATTCCCC
AGCTGAAGACATAGCCTTCTTTGCTGATGCACGGAGACGTCGTGCACAGC
GCGATGGCCCCGCCCACCATCTCACGCTCCTGCACCGAACCGAAATTCAG
GCGGAGGGTGAGAAGGAGGCCGGAATCGAGGACTGTGGAGGGAGAGACAG
AGACGACAATACAGCAAGTGCTGTTGATACTCCTGCTCCTACTCCTACTT
CACCTACATCTACGGGCGCTTCCATTCCGTGCAAGCCCGAGAGGAAAAAG
AGGGTGGACGAAAATGAGCTGCTCTCGTCAGCTCCCTCTCGGCGTAGCTC
CCACGCCACCACCATGCCCGAGGACAAGGCCAAGGGCGACGAGAAAGAGA
CCCAGGAGCAAGAGGGGACGAAGATAATGAGAAAAGGAGCAGATCCATAC
AACAGTACGGAAGGGGTGCCACGTTCGTTTTCTTCCCCTTCCTCTTCCAT
GGACCGCTACAAGGACGACGACAAAGACGAGGCGTTCGCTTCCGCCCTGC
TTGCCATGTTGACCCTTCTCCTGAACACAAACCTCCTCCCTCACATACCT
CCCCTCCTATATGACCCTCTACCTCTTTATGTCTACCGGACAAGTGGGGA
GGGGCGAGCGCTGGCGATGTCGGTCCTGTTCTTGCCGGGGGAGTGGCTTC
GGTATTGGCAAGGGCGGGTAAGGAGGGGAGGAAGAAAGGTAGGGGGAGGA
CGGGAAGGGGAGGCAAGGGGAGAGAAGGATGCTTCTCTTTACTCTTGTTA
AGTGGCAGACGACTGTAGGGTAGGAGCCGGCGAGGGTGGAAGCAGGATGA
AAATATCTTGCAGAGCAACAGTCACAAGCAGGCGGCGTACGAAGAATTTA
GTAAATGCATACACTCTCCCACCCTTTCTCCCCCCTCTCCTTCCCTCTCG
TCCTCCCTCCCTCCTTTCCTTAGGCATATCATCCCTTGCACGTAACCCTG
GGCTTTGAGAGGCAGGACGAGCGGGACCAAGAGGCGCGGCGCTGGGGGCG
GGTCCGTGTGCTGGGATATGGTTTGTCAAGGCGGAGGACGGCAGAGGTTT
TGGAGGCATTGGTAAATGTGCTCGTGAAAGGAGAAGGAGAAGGAGAAGGG
AGGAAAGGAGGACAATTGGGTACTTTTCTTCCTCGGGTTCGAGATTTGGC
GGTTGAGGTCATGCGTGTGCTGGAAAGGAGGATAGAGGGAAGAACGGAGG
GCGGTCGGGAGAATGAGGAGGAGAATGAGGAGGAGGTGGAAGAGGAGGAG
GAGGAAGTGAGGGAGATCACGGCCACACTCACGGCCTGCAGGCGGATACT
TGATTCTATGGCGGGCGGGTCGGCGTCGGGTTTGTGTTGGCAAGGGAAAG
AGGAGGAGAAAGAGACACCTTTACCGTTGGAGCTTGCGACAGGTGGGTCG
TCGCTTGTCAGATATGCAGCTCGAGGACGTGGGTGCCTTTGAGAGCAGCA
GCTGGATCGCTACCAAGGCACCCAGATGGGCGTATATGTAATAAGACTGA
CGAGGAGGGAGAGAGGTAGGCCCTGGAAATTGTGCCTGTTCACATATCAA
GTAGCCATGAGAGATGGAGACCCCTGCCGGCCTTCAAACCACAACACAAG
GAAGCACACCAACCGAC

Coding sequence (CDS) from alignment at scaffold_61:76670..78836+

>mRNA_10665 ID=mRNA_10665|Name=jgi.p|Nanoce1779_2|612101|organism=Nannochloropsis oceanica|type=CDS|length=4662bp|location=Sequence derived from alignment at scaffold_61:76670..78836+ (Nannochloropsis oceanica)
ATGCCACCGCCAACCCCCAAAGATGAGGTCAAGTACTGCCCGCAGCACGT
ATCCCTGCAAGCTTTCCCGGCCTTGTCTTCTTCCTCTTCCTCCTGTTGTT
GCTTCTCCTGCTCCTCATCCTCCTGCTCCTCCTCTACTTGTCACTCTCAA
GCCAACGTCGCCGCCAATAGTAGTACTTCATCATCACATGAGGCATCGGC
TTGGAAATATAAGGTCGTACGAGGCTCTCTGTATGTCGTGGGCCCTGCAA
TCGAGACCTTAGCCGAGGCAGGACATGCATACTGCATGGACCATACTACC
AGTGCCGCTGCGGCGCCTGCTTGTGATATTATGCCGTCCCTAATACAAGC
TGAAGACATAGCCTTCTTTGCTGATGCACGGAGACGTCGTGCACAGCGCG
ATGGCCCCGCCCACCATCTCACGCTCCTGCACCGAACCGAAATTCAGGCG
GAGGGTGAGAAGGAGGCCGGAATCGAGGACTGTGGAGGGAGAGACAGAGA
CGACAATACAGCAAGTGCTGTTGATACTCCTGCTCCTACTCCTACTTCAC
CTACATCTACGGGCGCTTCCATTCCGTGCAAGCCCGAGAGGAAAAAGAGG
GTGGACGAAAATGAGCTGCTCTCGTCAGCTCCCTCTCGGCGTAGCTCCCA
CGCCACCACCATGCCCGAGGACAAGGCCAAGGGCGACGAGAAAGAGACCC
AGGAGCAAGAGGGGACGAAGATAATGAGAAAAGGAGCAGATCCATACAAC
AGTACGGAAGGGGTGCCACGTTCGTTTTCTTCCCCTTCCTCTTCCATGGA
CCGCTACAAGGACGACGACAAAGACGAGGCGTTCGCTTCCGCCCTGCTTG
CCATGTTGACCCTTCTCCTGAACACAAACCTCCTCCCTCACATACCTCCC
CTCCTATATGACCCTCTACCTCTTTATGTCTACCGGACAAGTGGGGAGGG
GCGAGCGCTGGCGATGTCGGTCCTGTTCTTGCCGGGGGAGTGGCTTCGGT
ATTGGCAAGGGCGGGTAAGGAGGGGAGGAAGAAAGGCATATCATCCCTTG
CACGTAACCCTGGGCTTTGAGAGGCAGGACGAGCGGGACCAAGAGGCGCG
GCGCTGGGGGCGGGTCCGTGTGCTGGGATATGGTTTGTCAAGGCGGAGGA
CGGCAGAGGTTTTGGAGGCATTGGTAAATGTGCTCGTGAAAGGAGAAGGA
GAAGGAGAAGGGAGGAAAGGAGGACAATTGGGTACTTTTCTTCCTCGGGT
TCGAGATTTGGCGGTTGAGGTCATGCGTGTGCTGGAAAGGAGGATAGAGG
GAAGAACGGAGGGCGGTCGGGAGAATGAGGAGGAGAATGAGGAGGAGGTG
GAAGAGGAGGAGGAGGAAGTGAGGGAGATCACGGCCACACTCACGGCCTG
CAGGCGGATACTTGATTCTATGGCGGGCGGGTCGGCGTCGGGTTTGTGTT
GGCAAGGGAAAGAGGAGGAGAAAGAGACACCTTTACCGTTGGAGCTTGCG
ACAGGTGGGTCGTCGCTTGTCAGATATGCAGCTCGAGGACGTGGGTGCCT
TTGAATGCCACCGCCAACCCCCAAAGATGAGGTCAAGTACTGCCCGCAGC
ACGTATCCCTGCAAGCTTTCCCGGCCTTGTCTTCTTCCTCTTCCTCCTGT
TGTTGCTTCTCCTGCTCCTCATCCTCCTGCTCCTCCTCTACTTGTCACTC
TCAAGCCAACGTCGCCGCCAATAGTAGTACTTCATCATCACATGAGGCAT
CGGCTTGGAAATATAAGGTCGTACGAGGCTCTCTGTATGTCGTGGGCCCT
GCAATCGAGACCTTAGCCGAGGCAGGACATGCATACTGCATGGACCATAC
TACCAGTGCCGCTGCGGCGCCTGCTTGTGATATTATGCCGTCCCTAATAC
AAGCTGAAGACATAGCCTTCTTTGCTGATGCACGGAGACGTCGTGCACAG
CGCGATGGCCCCGCCCACCATCTCACGCTCCTGCACCGAACCGAAATTCA
GGCGGAGGGTGAGAAGGAGGCCGGAATCGAGGACTGTGGAGGGAGAGACA
GAGACGACAATACAGCAAGTGCTGTTGATACTCCTGCTCCTACTCCTACT
TCACCTACATCTACGGGCGCTTCCATTCCGTGCAAGCCCGAGAGGAAAAA
GAGGGTGGACGAAAATGAGCTGCTCTCGTCAGCTCCCTCTCGGCGTAGCT
CCCACGCCACCACCATGCCCGAGGACAAGGCCAAGGGCGACGAGAAAGAG
ACCCAGGAGCAAGAGGGGACGAAGATAATGAGAAAAGGAGCAGATCCATA
CAACAGTACGGAAGGGGTGCCACGTTCGTTTTCTTCCCCTTCCTCTTCCA
TGGACCGCTACAAGGACGACGACAAAGACGAGGCGTTCGCTTCCGCCCTG
CTTGCCATGTTGACCCTTCTCCTGAACACAAACCTCCTCCCTCACATACC
TCCCCTCCTATATGACCCTCTACCTCTTTATGTCTACCGGACAAGTGGGG
AGGGGCGAGCGCTGGCGATGTCGGTCCTGTTCTTGCCGGGGGAGTGGCTT
CGGTATTGGCAAGGGCGGGTAAGGAGGGGAGGAAGAAAGGCATATCATCC
CTTGCACGTAACCCTGGGCTTTGAGAGGCAGGACGAGCGGGACCAAGAGG
CGCGGCGCTGGGGGCGGGTCCGTGTGCTGGGATATGGTTTGTCAAGGCGG
AGGACGGCAGAGGTTTTGGAGGCATTGGTAAATGTGCTCGTGAAAGGAGA
AGGAGAAGGAGAAGGGAGGAAAGGAGGACAATTGGGTACTTTTCTTCCTC
GGGTTCGAGATTTGGCGGTTGAGGTCATGCGTGTGCTGGAAAGGAGGATA
GAGGGAAGAACGGAGGGCGGTCGGGAGAATGAGGAGGAGAATGAGGAGGA
GGTGGAAGAGGAGGAGGAGGAAGTGAGGGAGATCACGGCCACACTCACGG
CCTGCAGGCGGATACTTGATTCTATGGCGGGCGGGTCGGCGTCGGGTTTG
TGTTGGCAAGGGAAAGAGGAGGAGAAAGAGACACCTTTACCGTTGGAGCT
TGCGACAGGTGGGTCGTCGCTTGTCAGATATGCAGCTCGAGGACGTGGGT
GCCTTTGAATGCCACCGCCAACCCCCAAAGATGAGGTCAAGTACTGCCCG
CAGCACGTATCCCTGCAAGCTTTCCCGGCCTTGTCTTCTTCCTCTTCCTC
CTGTTGTTGCTTCTCCTGCTCCTCATCCTCCTGCTCCTCCTCTACTTGTC
ACTCTCAAGCCAACGTCGCCGCCAATAGTAGTACTTCATCATCACATGAG
GCATCGGCTTGGAAATATAAGGTCGTACGAGGCTCTCTGTATGTCGTGGG
CCCTGCAATCGAGACCTTAGCCGAGGCAGGACATGCATACTGCATGGACC
ATACTACCAGTGCCGCTGCGGCGCCTGCTTGTGATATTATGCCGTCCCTA
ATACAAGCTGAAGACATAGCCTTCTTTGCTGATGCACGGAGACGTCGTGC
ACAGCGCGATGGCCCCGCCCACCATCTCACGCTCCTGCACCGAACCGAAA
TTCAGGCGGAGGGTGAGAAGGAGGCCGGAATCGAGGACTGTGGAGGGAGA
GACAGAGACGACAATACAGCAAGTGCTGTTGATACTCCTGCTCCTACTCC
TACTTCACCTACATCTACGGGCGCTTCCATTCCGTGCAAGCCCGAGAGGA
AAAAGAGGGTGGACGAAAATGAGCTGCTCTCGTCAGCTCCCTCTCGGCGT
AGCTCCCACGCCACCACCATGCCCGAGGACAAGGCCAAGGGCGACGAGAA
AGAGACCCAGGAGCAAGAGGGGACGAAGATAATGAGAAAAGGAGCAGATC
CATACAACAGTACGGAAGGGGTGCCACGTTCGTTTTCTTCCCCTTCCTCT
TCCATGGACCGCTACAAGGACGACGACAAAGACGAGGCGTTCGCTTCCGC
CCTGCTTGCCATGTTGACCCTTCTCCTGAACACAAACCTCCTCCCTCACA
TACCTCCCCTCCTATATGACCCTCTACCTCTTTATGTCTACCGGACAAGT
GGGGAGGGGCGAGCGCTGGCGATGTCGGTCCTGTTCTTGCCGGGGGAGTG
GCTTCGGTATTGGCAAGGGCGGGTAAGGAGGGGAGGAAGAAAGGCATATC
ATCCCTTGCACGTAACCCTGGGCTTTGAGAGGCAGGACGAGCGGGACCAA
GAGGCGCGGCGCTGGGGGCGGGTCCGTGTGCTGGGATATGGTTTGTCAAG
GCGGAGGACGGCAGAGGTTTTGGAGGCATTGGTAAATGTGCTCGTGAAAG
GAGAAGGAGAAGGAGAAGGGAGGAAAGGAGGACAATTGGGTACTTTTCTT
CCTCGGGTTCGAGATTTGGCGGTTGAGGTCATGCGTGTGCTGGAAAGGAG
GATAGAGGGAAGAACGGAGGGCGGTCGGGAGAATGAGGAGGAGAATGAGG
AGGAGGTGGAAGAGGAGGAGGAGGAAGTGAGGGAGATCACGGCCACACTC
ACGGCCTGCAGGCGGATACTTGATTCTATGGCGGGCGGGTCGGCGTCGGG
TTTGTGTTGGCAAGGGAAAGAGGAGGAGAAAGAGACACCTTTACCGTTGG
AGCTTGCGACAGGTGGGTCGTCGCTTGTCAGATATGCAGCTCGAGGACGT
GGGTGCCTTTGA

Synonyms

Publications