jgi.p|Nanoce1779_2|612087, mRNA_10663 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|612087
Unique Name	mRNA_10663
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1080
Alignment location	scaffold_61:68711..70625 -

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Properties


Property Name	Value
TranscriptId	612173
Track	FilteredModels2
ProteinId	612087

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_61	supercontig	scaffold_61:68711..70625 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|612087	gene_10663	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|612087	mRNA_10663-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10663	CDS_10663	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_61:68711..70625-
coding sequence from alignment at scaffold_61:68711..70625-

mRNA sequence

>mRNA_10663 ID=mRNA_10663|Name=jgi.p|Nanoce1779_2|612087|organism=Nannochloropsis oceanica|type=mRNA|length=1080bp
AGATCTCTGGCTGAGCCCTGCTCAAGGACAGTGCGCTCCTCCCCGTCACA
AGCATCCCCATCATCGCCTCCCCACTCTCACTCTACAATGCTGCCTCGAG
TGAGCCGTCTCGCCGTCCTCCTCCCTACAGCCATTACACACACCACCGTC
TGCAAAAAAATATGTGCCGTCACAAGCTCAAGAAGGAGGCCAAGGCAAGA
CAACCCTCCCCTCCTGCCGCAGTCGCTCTCCGGACTTGGTGGGGGTGGTG
GGAGGAGCATCAGCACAACCCTTCCGACCGCCGCCCCGGCGCCCAAGCGA
GCCGGTGGCGGTGGTGGCCCTAGAGGGAAAAGCCCGAACAATCTAGCTAA
AGAGAGTGCCTTTGTGATCAACGAGGCCATCAAAGCGCGTACCGTCCGTC
TGGTATTTAAAGAAGAAGGGTCGAGTGGGCCGCCCACCTCTACCGTTGTC
TCTCGACAGGAGGCATTGGCGAAGGCGAAGGAGGTGGGGCTAGACCTGGT
GTTGGTTACCACGGCCTCGGAGCCCTGGGTTTGCAAGCTCATGAACGCCC
GTCGTGAAGAGTACCAGCGGCAGAAGAAGGAGAGACGGATGAAGAAGAGC
AGCAACACTTTGAAGGAGATCAGCATCAGGGGAAACATCTCGGACCACGA
TTTGCTGATCAAACTGAGGCGTGTCGACGAGTTCTTCGAGCAAGGCCACA
GCGTCCGGGTCATCATCCTTCCCACTGGCAGCCAGATGAATCTCCGCCCC
CAGCGCTTGCTCGAGCTTCGAAACTTCATCTTGGACGATTACTTTGACAA
CAAGTATAAGAGCGTGGTCGAGATCCAACCCCCGACCCCGACCTCGGTAA
GGAGAGAGATTATCCTGCACCCCAAGCGCCATCCGTCACCCCCACCAGCG
GGGGGAGACGTGCCCAAACAGATACGAATGAAGTCAATGCCGGAAGAGCT
GGGGGAAGAGGAGCGGGAGGCGACGACAACCACATAGAGATAGGAGGATG
TTGACGTGGTGAACGGTAGCTAGTAATGGAGAGGAGGGAGAGGGGGCCCG
CGGGCGAAAGCAAAGGAAGTGACTGTAAGC

protein sequence of jgi.p|Nanoce1779_2|612087

>mRNA_10663-protein ID=mRNA_10663-protein|Name=jgi.p|Nanoce1779_2|612087|organism=Nannochloropsis oceanica|type=polypeptide|length=300bp
MLPRVSRLAVLLPTAITHTTVCKKICAVTSSRRRPRQDNPPLLPQSLSGL
GGGGGRSISTTLPTAAPAPKRAGGGGGPRGKSPNNLAKESAFVINEAIKA
RTVRLVFKEEGSSGPPTSTVVSRQEALAKAKEVGLDLVLVTTASEPWVCK
LMNARREEYQRQKKERRMKKSSNTLKEISIRGNISDHDLLIKLRRVDEFF
EQGHSVRVIILPTGSQMNLRPQRLLELRNFILDDYFDNKYKSVVEIQPPT
PTSVRREIILHPKRHPSPPPAGGDVPKQIRMKSMPEELGEEEREATTTT*

mRNA from alignment at scaffold_61:68711..70625-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10663 ID=mRNA_10663|Name=jgi.p|Nanoce1779_2|612087|organism=Nannochloropsis oceanica|type=mRNA|length=1915bp|location=Sequence derived from alignment at scaffold_61:68711..70625- (Nannochloropsis oceanica)
AGATCTCTGGCTGAGCCCTGCTCAAGGACAGTGCGCTCCTCCCCGTCACA
AGCATCCCCATCATCGCCTCCCCACTCTCACTCTACAATGCTGCCTCGAG
TGAGCCGTCTCGCCGTCCTCCTCCCTACAGCCATTACACACACCACCGTC
TGCAAAAAAATATGTGCCGTCACAAGCTCAAGAAGGAGGCCAAGGCAAGA
CAACCCTCCCCTCCTGCCGCAGTCGCTCTCCGGACTTGGTGGGGGTGGTG
GGAGGAGCATCAGCACAACCCTTCCGACCGCCGCCCCGGCGCCCAAGCGA
GCCGGTGGCGGTGGTGGCCCTAGAGGGAAAAGCCCGAACAATCTAGCTAA
AGAGAGGTAGGTGCAGGGCGAAAGACAGTATGGGTGAGCAAGTGGTAGGA
GTAGCGTGATGCTCCTCTTTCCCTCTCTCCCCCTCTCACCCCGCCCCTTC
CGCCCTCCCTTCTCTCAGTGCCTTTGTGATCAACGAGGCCATCAAAGCGC
GTACCGTCCGTCTGGTATTTAAAGAAGAAGGGTCGAGTGGGCCGCCCACC
TCTACCGTTGTCTCTCGACAGGAGGCATTGGCGAAGGCGAAGGAGGTGGG
GCTAGACCTGGTGTTGGGTAAGGATTGGATGGAAAGAGAGCTGGGAAAAC
GGGAGAGACAGAAAAGATGAAGAAGTTCTAGCCCATTTTCACTTTTTTTT
TCATCCGTTATAATATTCAGCAGCCGCACCTTTCACTATGCGCTAATTCT
CCTCTCCCAACTTTCCCCCCTGTCCACGCTGGCAGTTACCACGGCCTCGG
AGCCCTGGGTTTGCAAGCTCATGAACGCCCGTCGTGAAGAGTACCAGCGG
CAGAAGAAGGAGAGACGGATGAAGAAGAGCAGCAACACTTTGAAGGAGAT
CAGCATCAGGGTAGGGAGGCAGGGAGGGAGGAATAGAGAGATGTGAAAGC
AAGCACGAAGGCGACCCTGCCGTGTCAACGCGCGAAATTGGCCCTCACCG
ACCACAATATCTCTCCCTTCCTCTTCCGACATCTTTCAGGGAAACATCTC
GGACCACGATTTGCTGATCAAACTGAGGCGTGTCGACGAGTTCTTCGAGC
AAGGCCACAGCGTCCGGGTCATCATCCTTCCCACTGGCAGCCAGGTATGG
GCGGCTTCTTCTCCCCTCGTCCTTATTCCGTATTCCTGTCGTTGATATGC
CTCTGTTGCGTCGGGTGGTCGTAGGAGCTGTCTTTGCCATAATTTGTCGC
AAGACGTTTGTCGTCCGCTCACATGCCAATATCGTCCTCCGTCCTTCCCT
TCTTTTCTCCCTTTCTCCCCCCCCCGCCCCCCACTTCCACCAATTCACTC
TAGATGAATCTCCGCCCCCAGCGCTTGCTCGAGCTTCGAAACTTCATCTT
GGACGATTACTTTGACAACAAGTATAAGGTCAGGGTAGACAGATGGGGAG
GGGGGGAGGGAGGGGAAGGGCGTGGAGGAGAGAGGACGTTGAACGCGCGA
CGTGCTAAAGGTAGGATGAGCGAGGGGGATCGCAAGATAGTGATAGAAAA
AGAGAATAGGATCAATGATCCAGGAATATAATGAAGCGCAATCAGTATTC
ACTCGGTATTTCCTTCGTCCCTCCGCTCCCTTTCTCCTGTCACAGAGCGT
GGTCGAGATCCAACCCCCGACCCCGACCTCGGTAAGGAGAGAGATTATCC
TGCACCCCAAGCGCCATCCGTCACCCCCACCAGCGGGGGGAGACGTGCCC
AAACAGATACGAATGAAGTCAATGCCGGAAGAGCTGGGGGAAGAGGAGCG
GGAGGCGACGACAACCACATAGAGATAGGAGGATGTTGACGTGGTGAACG
GTAGCTAGTAATGGAGAGGAGGGAGAGGGGGCCCGCGGGCGAAAGCAAAG
GAAGTGACTGTAAGC

Coding sequence (CDS) from alignment at scaffold_61:68711..70625-

>mRNA_10663 ID=mRNA_10663|Name=jgi.p|Nanoce1779_2|612087|organism=Nannochloropsis oceanica|type=CDS|length=5400bp|location=Sequence derived from alignment at scaffold_61:68711..70625- (Nannochloropsis oceanica)
AGCGTGGTCGAGATCCAACCCCCGACCCCGACCTCGGTAAGGAGAGAGAT
TATCCTGCACCCCAAGCGCCATCCGTCACCCCCACCAGCGGGGGGAGACG
TGCCCAAACAGATACGAATGAAGTCAATGCCGGAAGAGCTGGGGGAAGAG
GAGCGGGAGGCGACGACAACCACATAGATGAATCTCCGCCCCCAGCGCTT
GCTCGAGCTTCGAAACTTCATCTTGGACGATTACTTTGACAACAAGTATA
AGGGAAACATCTCGGACCACGATTTGCTGATCAAACTGAGGCGTGTCGAC
GAGTTCTTCGAGCAAGGCCACAGCGTCCGGGTCATCATCCTTCCCACTGG
CAGCCAGTTACCACGGCCTCGGAGCCCTGGGTTTGCAAGCTCATGAACGC
CCGTCGTGAAGAGTACCAGCGGCAGAAGAAGGAGAGACGGATGAAGAAGA
GCAGCAACACTTTGAAGGAGATCAGCATCAGGTGCCTTTGTGATCAACGA
GGCCATCAAAGCGCGTACCGTCCGTCTGGTATTTAAAGAAGAAGGGTCGA
GTGGGCCGCCCACCTCTACCGTTGTCTCTCGACAGGAGGCATTGGCGAAG
GCGAAGGAGGTGGGGCTAGACCTGGTGTTGGATGCTGCCTCGAGTGAGCC
GTCTCGCCGTCCTCCTCCCTACAGCCATTACACACACCACCGTCTGCAAA
AAAATATGTGCCGTCACAAGCTCAAGAAGGAGGCCAAGGCAAGACAACCC
TCCCCTCCTGCCGCAGTCGCTCTCCGGACTTGGTGGGGGTGGTGGGAGGA
GCATCAGCACAACCCTTCCGACCGCCGCCCCGGCGCCCAAGCGAGCCGGT
GGCGGTGGTGGCCCTAGAGGGAAAAGCCCGAACAATCTAGCTAAAGAGAG
AGCGTGGTCGAGATCCAACCCCCGACCCCGACCTCGGTAAGGAGAGAGAT
TATCCTGCACCCCAAGCGCCATCCGTCACCCCCACCAGCGGGGGGAGACG
TGCCCAAACAGATACGAATGAAGTCAATGCCGGAAGAGCTGGGGGAAGAG
GAGCGGGAGGCGACGACAACCACATAGATGAATCTCCGCCCCCAGCGCTT
GCTCGAGCTTCGAAACTTCATCTTGGACGATTACTTTGACAACAAGTATA
AGGGAAACATCTCGGACCACGATTTGCTGATCAAACTGAGGCGTGTCGAC
GAGTTCTTCGAGCAAGGCCACAGCGTCCGGGTCATCATCCTTCCCACTGG
CAGCCAGTTACCACGGCCTCGGAGCCCTGGGTTTGCAAGCTCATGAACGC
CCGTCGTGAAGAGTACCAGCGGCAGAAGAAGGAGAGACGGATGAAGAAGA
GCAGCAACACTTTGAAGGAGATCAGCATCAGGTGCCTTTGTGATCAACGA
GGCCATCAAAGCGCGTACCGTCCGTCTGGTATTTAAAGAAGAAGGGTCGA
GTGGGCCGCCCACCTCTACCGTTGTCTCTCGACAGGAGGCATTGGCGAAG
GCGAAGGAGGTGGGGCTAGACCTGGTGTTGGATGCTGCCTCGAGTGAGCC
GTCTCGCCGTCCTCCTCCCTACAGCCATTACACACACCACCGTCTGCAAA
AAAATATGTGCCGTCACAAGCTCAAGAAGGAGGCCAAGGCAAGACAACCC
TCCCCTCCTGCCGCAGTCGCTCTCCGGACTTGGTGGGGGTGGTGGGAGGA
GCATCAGCACAACCCTTCCGACCGCCGCCCCGGCGCCCAAGCGAGCCGGT
GGCGGTGGTGGCCCTAGAGGGAAAAGCCCGAACAATCTAGCTAAAGAGAG
AGCGTGGTCGAGATCCAACCCCCGACCCCGACCTCGGTAAGGAGAGAGAT
TATCCTGCACCCCAAGCGCCATCCGTCACCCCCACCAGCGGGGGGAGACG
TGCCCAAACAGATACGAATGAAGTCAATGCCGGAAGAGCTGGGGGAAGAG
GAGCGGGAGGCGACGACAACCACATAGATGAATCTCCGCCCCCAGCGCTT
GCTCGAGCTTCGAAACTTCATCTTGGACGATTACTTTGACAACAAGTATA
AGGGAAACATCTCGGACCACGATTTGCTGATCAAACTGAGGCGTGTCGAC
GAGTTCTTCGAGCAAGGCCACAGCGTCCGGGTCATCATCCTTCCCACTGG
CAGCCAGTTACCACGGCCTCGGAGCCCTGGGTTTGCAAGCTCATGAACGC
CCGTCGTGAAGAGTACCAGCGGCAGAAGAAGGAGAGACGGATGAAGAAGA
GCAGCAACACTTTGAAGGAGATCAGCATCAGGTGCCTTTGTGATCAACGA
GGCCATCAAAGCGCGTACCGTCCGTCTGGTATTTAAAGAAGAAGGGTCGA
GTGGGCCGCCCACCTCTACCGTTGTCTCTCGACAGGAGGCATTGGCGAAG
GCGAAGGAGGTGGGGCTAGACCTGGTGTTGGATGCTGCCTCGAGTGAGCC
GTCTCGCCGTCCTCCTCCCTACAGCCATTACACACACCACCGTCTGCAAA
AAAATATGTGCCGTCACAAGCTCAAGAAGGAGGCCAAGGCAAGACAACCC
TCCCCTCCTGCCGCAGTCGCTCTCCGGACTTGGTGGGGGTGGTGGGAGGA
GCATCAGCACAACCCTTCCGACCGCCGCCCCGGCGCCCAAGCGAGCCGGT
GGCGGTGGTGGCCCTAGAGGGAAAAGCCCGAACAATCTAGCTAAAGAGAG
AGCGTGGTCGAGATCCAACCCCCGACCCCGACCTCGGTAAGGAGAGAGAT
TATCCTGCACCCCAAGCGCCATCCGTCACCCCCACCAGCGGGGGGAGACG
TGCCCAAACAGATACGAATGAAGTCAATGCCGGAAGAGCTGGGGGAAGAG
GAGCGGGAGGCGACGACAACCACATAGATGAATCTCCGCCCCCAGCGCTT
GCTCGAGCTTCGAAACTTCATCTTGGACGATTACTTTGACAACAAGTATA
AGGGAAACATCTCGGACCACGATTTGCTGATCAAACTGAGGCGTGTCGAC
GAGTTCTTCGAGCAAGGCCACAGCGTCCGGGTCATCATCCTTCCCACTGG
CAGCCAGTTACCACGGCCTCGGAGCCCTGGGTTTGCAAGCTCATGAACGC
CCGTCGTGAAGAGTACCAGCGGCAGAAGAAGGAGAGACGGATGAAGAAGA
GCAGCAACACTTTGAAGGAGATCAGCATCAGGTGCCTTTGTGATCAACGA
GGCCATCAAAGCGCGTACCGTCCGTCTGGTATTTAAAGAAGAAGGGTCGA
GTGGGCCGCCCACCTCTACCGTTGTCTCTCGACAGGAGGCATTGGCGAAG
GCGAAGGAGGTGGGGCTAGACCTGGTGTTGGATGCTGCCTCGAGTGAGCC
GTCTCGCCGTCCTCCTCCCTACAGCCATTACACACACCACCGTCTGCAAA
AAAATATGTGCCGTCACAAGCTCAAGAAGGAGGCCAAGGCAAGACAACCC
TCCCCTCCTGCCGCAGTCGCTCTCCGGACTTGGTGGGGGTGGTGGGAGGA
GCATCAGCACAACCCTTCCGACCGCCGCCCCGGCGCCCAAGCGAGCCGGT
GGCGGTGGTGGCCCTAGAGGGAAAAGCCCGAACAATCTAGCTAAAGAGAG
AGCGTGGTCGAGATCCAACCCCCGACCCCGACCTCGGTAAGGAGAGAGAT
TATCCTGCACCCCAAGCGCCATCCGTCACCCCCACCAGCGGGGGGAGACG
TGCCCAAACAGATACGAATGAAGTCAATGCCGGAAGAGCTGGGGGAAGAG
GAGCGGGAGGCGACGACAACCACATAGATGAATCTCCGCCCCCAGCGCTT
GCTCGAGCTTCGAAACTTCATCTTGGACGATTACTTTGACAACAAGTATA
AGGGAAACATCTCGGACCACGATTTGCTGATCAAACTGAGGCGTGTCGAC
GAGTTCTTCGAGCAAGGCCACAGCGTCCGGGTCATCATCCTTCCCACTGG
CAGCCAGTTACCACGGCCTCGGAGCCCTGGGTTTGCAAGCTCATGAACGC
CCGTCGTGAAGAGTACCAGCGGCAGAAGAAGGAGAGACGGATGAAGAAGA
GCAGCAACACTTTGAAGGAGATCAGCATCAGGTGCCTTTGTGATCAACGA
GGCCATCAAAGCGCGTACCGTCCGTCTGGTATTTAAAGAAGAAGGGTCGA
GTGGGCCGCCCACCTCTACCGTTGTCTCTCGACAGGAGGCATTGGCGAAG
GCGAAGGAGGTGGGGCTAGACCTGGTGTTGGATGCTGCCTCGAGTGAGCC
GTCTCGCCGTCCTCCTCCCTACAGCCATTACACACACCACCGTCTGCAAA
AAAATATGTGCCGTCACAAGCTCAAGAAGGAGGCCAAGGCAAGACAACCC
TCCCCTCCTGCCGCAGTCGCTCTCCGGACTTGGTGGGGGTGGTGGGAGGA
GCATCAGCACAACCCTTCCGACCGCCGCCCCGGCGCCCAAGCGAGCCGGT
GGCGGTGGTGGCCCTAGAGGGAAAAGCCCGAACAATCTAGCTAAAGAGAG
AGCGTGGTCGAGATCCAACCCCCGACCCCGACCTCGGTAAGGAGAGAGAT
TATCCTGCACCCCAAGCGCCATCCGTCACCCCCACCAGCGGGGGGAGACG
TGCCCAAACAGATACGAATGAAGTCAATGCCGGAAGAGCTGGGGGAAGAG
GAGCGGGAGGCGACGACAACCACATAGATGAATCTCCGCCCCCAGCGCTT
GCTCGAGCTTCGAAACTTCATCTTGGACGATTACTTTGACAACAAGTATA
AGGGAAACATCTCGGACCACGATTTGCTGATCAAACTGAGGCGTGTCGAC
GAGTTCTTCGAGCAAGGCCACAGCGTCCGGGTCATCATCCTTCCCACTGG
CAGCCAGTTACCACGGCCTCGGAGCCCTGGGTTTGCAAGCTCATGAACGC
CCGTCGTGAAGAGTACCAGCGGCAGAAGAAGGAGAGACGGATGAAGAAGA
GCAGCAACACTTTGAAGGAGATCAGCATCAGGTGCCTTTGTGATCAACGA
GGCCATCAAAGCGCGTACCGTCCGTCTGGTATTTAAAGAAGAAGGGTCGA
GTGGGCCGCCCACCTCTACCGTTGTCTCTCGACAGGAGGCATTGGCGAAG
GCGAAGGAGGTGGGGCTAGACCTGGTGTTGGATGCTGCCTCGAGTGAGCC
GTCTCGCCGTCCTCCTCCCTACAGCCATTACACACACCACCGTCTGCAAA
AAAATATGTGCCGTCACAAGCTCAAGAAGGAGGCCAAGGCAAGACAACCC
TCCCCTCCTGCCGCAGTCGCTCTCCGGACTTGGTGGGGGTGGTGGGAGGA
GCATCAGCACAACCCTTCCGACCGCCGCCCCGGCGCCCAAGCGAGCCGGT
GGCGGTGGTGGCCCTAGAGGGAAAAGCCCGAACAATCTAGCTAAAGAGAG

Synonyms

Publications