jgi.p|Nanoce1779_2|612073, mRNA_10661 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|612073
Unique NamemRNA_10661
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length965
Alignment locationscaffold_61:61552..63297 -

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Properties
Property NameValue
TranscriptId612159
TrackFilteredModels2
ProteinId612073
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_61supercontigscaffold_61:61552..63297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612073gene_10661Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612073mRNA_10661-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10661CDS_10661Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10661 ID=mRNA_10661|Name=jgi.p|Nanoce1779_2|612073|organism=Nannochloropsis oceanica|type=mRNA|length=965bp
TCGCCAAAGCCGCCGCAGGGGCAGCAAGCACGGAGGTCGCCTTTTCGTTT
TCCATCTCGTCGTCCTCCTCCTCCTCCTCCTCGTCCTCGCTCGAGCTCCC
CTCTTTCGTGGACAGAGCGCGCCGCATGTAGGCCATGTGCTCGTCCACCT
CCTCCTTGCTCTTCAGGACGCTAGGGGTAGGCACGCGGGCGGCTATGGGG
GGAGGGCGCTGGTTGAATTCGTCCCCACCCAGGTCATCTGACAGGGCCTC
GTCGTCGTCGGGGCTCACGGGGCCCGGCATCATGCCGTCCTGCGAGCACT
CCAGGTGGGGCATGGCCAAGCACACCGACGACGACGTCCGCTTTATGATA
GCCGCGCTGCTGCTCGGGGTCATGGGAAAAACAAGCTGCCCTTGGCTCGT
GTGCGGTTGCAGCTGCGGCAACTGCTGCTGCTGTCGTCGTTGCTGGCGTT
GGGAGGGGGTGGTGCGCAATTGAACTACAACGGGCTCTCCGTCCGGGCCA
GGCGGGACGGGCGGGTAATGGGAGTGACTGGCAGTGGCGATGCTACGGGT
GGGTGTCTTGCCCTTGAGGCTGGCCTTGAGCCGAGCCGCGAAAGTCGAGG
AGGAATTGGAGCTGAATCGCTCGGGATCTTCGGCCATATGCGCTGCCGGG
GACTCCCTCTCCGTGTCCGAGTCGAGGCTATTGAGGCTCTTGCTGGAGAG
GACGGGAGGGAGGTTGCTAGGACGTGCTCGGTGCCGCCGCGAGGGCAGCT
TCAGCTTCTCCCCGACAGCAACCTGTGAGATATACACACGGAGACGAAGA
TGGGCAAGCGTCCCGAGGGGGTCGAGGGAGCACAAAAGGGCAAGGGAAAA
TGATGCCATGGCCTGTGGCTCCTGGTCATCCTTTCCTCCTTTCCTCCTTC
CCTCCTTCCCTCCTTCCCTGCCCTCTCCCTCCTCCCTTCCTTACCCCCTT
CTCCGCGCCCTCGCC
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protein sequence of jgi.p|Nanoce1779_2|612073

>mRNA_10661-protein ID=mRNA_10661-protein|Name=jgi.p|Nanoce1779_2|612073|organism=Nannochloropsis oceanica|type=polypeptide|length=112bp
MCSSTSSLLFRTLGVGTRAAMGGGRWLNSSPPRSSDRASSSSGLTGPGIM
PSCEHSRWGMAKHTDDDVRFMIAALLLGVMGKTSCPWLVCGCSCGNCCCC
RRCWRWEGVVRN
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mRNA from alignment at scaffold_61:61552..63297-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10661 ID=mRNA_10661|Name=jgi.p|Nanoce1779_2|612073|organism=Nannochloropsis oceanica|type=mRNA|length=1746bp|location=Sequence derived from alignment at scaffold_61:61552..63297- (Nannochloropsis oceanica)
TCGCCAAAGCCGCCGCAGGGGCAGCAAGCACGGAGGTCGCCTTTTCGTTT
TCCATCTCGTCGTCCTCCTCCTCCTCCTCCTCGTCCTGCACAGAATACAC
GGGAAATGAGTGAGAAGACGTTCAGCATCCATCCCACCGCTTTCCCTATC
CTCTTCTTTTTTTTTCTTTTTTTTTCTTTTTTTTCCTCCCTCCCACCGTA
CCTCGCTCGAGCTCCCCTCTTTCGTGGACAGAGCGCGCCGCATGTAGGCC
ATGTGCTCGTCCACCTCCTCCTTGCTCTTCAGGACGCTAGGGGTAGGCAC
GCGGGCGGCTATGGGGGGAGGGCGCTGGTTGAATTCGTCCCCACCCAGGT
CATCTGACAGGGCCTCGTCGTCGTCGGGGCTCCTGCGAGAAGGAGGAAAG
GAGGGAGGGAGAAAGGGAGGGAGGATGGGAACCGTCAAAACCTCAATGAA
AGTACACATCACCTTCATGCACGACCAAAACTAGAAGTAGAAGCGGGTCG
TGAGGCCTTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTC
CCGGCTTACACGGGGCCCGGCATCATGCCGTCCTGCGAGCACTCCAGGTG
GGGCATGGCCAAGCACACCGACGACGACGTCCGCTTTATGATAGCCGCGC
TGCTGCTCGGGGTCATGGGAAAAACAAGCTGCCCTTGGCTCGTGTGCGGT
TGCAGCTGCGGCAACTGCTGCTGCTGTCGTCGTTGCTGGCGTTGGGAGGG
GGTGGTGCGCAATTGCTAGAGAGGCGGGAAGGGGGGTGGGAAGAGGACGG
TGAGGGGATTGTGCTCGGGAAGGCAGGGAGGAGGGTCGGGGGACACGCGG
GCAAGGGAGAGCACGACTGAATGGAAATAGTGCAGTGAGAAGGCGCGCAG
AGAGGGGAGGGACGGAGGGAGGGAGGGACGGAGGGAGGGACGGAGGGAGG
GCGAGATGGTCGGCACTCACAACTACAACGGGCTCTCCGTCCGGGCCAGG
CGGGACGGGCGGGTAATGGGAGTGACTGGCAGTGGCGATGCTACGGGTGG
GTGTCTTGCCCTTGAGGCTGGCCTTGAGCCGAGCCGCGAAAGTCGAGGAG
GAATTGGAGCTGAATCGCTCGGGATCTGGGCGGGGAGGTTTGAGGTAAAT
GGATGAATGGATAGGGCCTGGGGTTGGATGGACGTCTGTCGGGCCGCGGG
GGAGGGTTTCCTGAAAAGACGCGCAAGGGTTGTTCTCTCAATCTCTCTCA
TGGTATTTCTCTCAATCTCTCTCTCGGTATTTCTCTCACCTTCCAACTCC
CTCTCTCTCTCTCTCTCTCGTGTTCCCTCTCTGCCTCTTCTTGCTTCTCC
CTCTTGTTCTCGCTCCCCCATCCCACCCTTCAGTCCATCCCTGTCTCTCG
CTCCTCACCTTCGGCCATATGCGCTGCCGGGGACTCCCTCTCCGTGTCCG
AGTCGAGGCTATTGAGGCTCTTGCTGGAGAGGACGGGAGGGAGGTTGCTA
GGACGTGCTCGGTGCCGCCGCGAGGGCAGCTTCAGCTTCTCCCCGACAGC
AACCTGTGAGATATACACACGGAGACGAAGATGGGCAAGCGTCCCGAGGG
GGTCGAGGGAGCACAAAAGGGCAAGGGAAAATGATGCCATGGCCTGTGGC
TCCTGGTCATCCTTTCCTCCTTTCCTCCTTCCCTCCTTCCCTCCTTCCCT
GCCCTCTCCCTCCTCCCTTCCTTACCCCCTTCTCCGCGCCCTCGCC
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Coding sequence (CDS) from alignment at scaffold_61:61552..63297-

>mRNA_10661 ID=mRNA_10661|Name=jgi.p|Nanoce1779_2|612073|organism=Nannochloropsis oceanica|type=CDS|length=672bp|location=Sequence derived from alignment at scaffold_61:61552..63297- (Nannochloropsis oceanica)
ACGGGGCCCGGCATCATGCCGTCCTGCGAGCACTCCAGGTGGGGCATGGC
CAAGCACACCGACGACGACGTCCGCTTTATGATAGCCGCGCTGCTGCTCG
GGGTCATGGGAAAAACAAGCTGCCCTTGGCTCGTGTGCGGTTGCAGCTGC
GGCAACTGCTGCTGCTGTCGTCGTTGCTGGCGTTGGGAGGGGGTGGTGCG
CAATATGTGCTCGTCCACCTCCTCCTTGCTCTTCAGGACGCTAGGGGTAG
GCACGCGGGCGGCTATGGGGGGAGGGCGCTGGTTGAATTCGTCCCCACCC
AGGTCATCTGACAGGGCCTCGTCGTCGTCGGGGCTCACGGGGCCCGGCAT
CATGCCGTCCTGCGAGCACTCCAGGTGGGGCATGGCCAAGCACACCGACG
ACGACGTCCGCTTTATGATAGCCGCGCTGCTGCTCGGGGTCATGGGAAAA
ACAAGCTGCCCTTGGCTCGTGTGCGGTTGCAGCTGCGGCAACTGCTGCTG
CTGTCGTCGTTGCTGGCGTTGGGAGGGGGTGGTGCGCAATATGTGCTCGT
CCACCTCCTCCTTGCTCTTCAGGACGCTAGGGGTAGGCACGCGGGCGGCT
ATGGGGGGAGGGCGCTGGTTGAATTCGTCCCCACCCAGGTCATCTGACAG
GGCCTCGTCGTCGTCGGGGCTC
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Synonyms
Publications