jgi.p|Nanoce1779_2|378938, mRNA_10659 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|378938
Unique NamemRNA_10659
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length918
Alignment locationscaffold_61:56798..58102 +

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Properties
Property NameValue
TranscriptId379024
TrackFilteredModels2
ProteinId378938
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_61supercontigscaffold_61:56798..58102 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|378938gene_10659Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|378938mRNA_10659-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10659CDS_10659Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10659 ID=mRNA_10659|Name=jgi.p|Nanoce1779_2|378938|organism=Nannochloropsis oceanica|type=mRNA|length=918bp
CTACACAATCAAGCAGCCGTCTTACATTCTAGCTAAGCCTTTTCATCACT
GAAAGCGGTCGAGTGCCGCTGCCCTAGCGCGTGGCGGCCCCGCCGAAACC
AGCCATGGCACCCAATAATGTGCCCATGGGCGCAGCTGAGGACAATGAGG
GGGAAGGGGCAGAGCCTGTGCCTATACGGCCATTCACCCCACGCCTGCAC
AGCCGGCCTTCCGTCCGCATGTTCAGTGAGCATGGAAGGGAGACGGATTG
TAATGCGGGCGAGAATAAGAAAGAAATGGCCGCCGCAGCCGTCGCAGTCG
TAAACACCATCAAGCCCAGTGGGACGAAGCATGAGGCGGGTCTAGCAGGA
GGATCAGGGGAAGGCGGAACTCACCCGCCCTGCTATCTGGAGGAGGCTTC
CTGGTGGAGCATTTTAACGTTTGGGTGGATGGGCCCCGTGATCAAAGAGG
GGAATCGTCGCCCACTGACAGAGGCGGACATGCCGGGTCTGGCCAGGCGG
GACCAAGCCGTGCACCTCCAAGGCCTGGTGGAGACCCAGTGGAAGGCGGA
AATGAAGCTGCGCCCGGATGCCCCTCAGCTGTGGCGGGCGATGGTGAGAG
CCTTCTTCCCCGTGCAGCTGCCCATGTATTTCCCCTTTGTGATGGTTACC
ACCGCCAAGATCGTGCAGGCGCAGGTTGGGGTGAGGGGTCTCATCCGTGT
GCTCGACACGGGGGGGGAGGCTTTCGAGGTGAGGAAGGAGAAACGGCGAG
ATGAGACTGAAACACGGATGCTGGCCAATCGACTTTCTCCTCATTTATTA
ACAAACGCCCTTATACATAATAGGGCTACATGTATGCGGGTGTAATTGTC
TTCACGGGCTGGGTCATGCTCATGCTCCATCACCAGGTTCAATTTATGGG
CTGGCGCTTGGGCCTTGC
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protein sequence of jgi.p|Nanoce1779_2|378938

>mRNA_10659-protein ID=mRNA_10659-protein|Name=jgi.p|Nanoce1779_2|378938|organism=Nannochloropsis oceanica|type=polypeptide|length=247bp
MAPNNVPMGAAEDNEGEGAEPVPIRPFTPRLHSRPSVRMFSEHGRETDCN
AGENKKEMAAAAVAVVNTIKPSGTKHEAGLAGGSGEGGTHPPCYLEEASW
WSILTFGWMGPVIKEGNRRPLTEADMPGLARRDQAVHLQGLVETQWKAEM
KLRPDAPQLWRAMVRAFFPVQLPMYFPFVMVTTAKIVQAQVGVRGLIRVL
DTGGEAFEVRKEKRRDETETRMLANRLSPHLLTNALIHNRATCMRV*
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mRNA from alignment at scaffold_61:56798..58102+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10659 ID=mRNA_10659|Name=jgi.p|Nanoce1779_2|378938|organism=Nannochloropsis oceanica|type=mRNA|length=1305bp|location=Sequence derived from alignment at scaffold_61:56798..58102+ (Nannochloropsis oceanica)
CTACACAATCAAGCAGCCGTCTTACATTCTAGCTAAGCCTTTTCATCACT
GAAAGCGGTCGAGTGCCGCTGCCCTAGCGCGTGGCGGCCCCGCCGAAACC
AGCCATGGCACCCAATAATGTGCCCATGGGCGCAGCTGAGGACAATGAGG
GGGAAGGGGCAGAGCCTGTGCCTATACGGCCATTCACCCCACGCCTGCAC
AGCCGGCCTTCCGTCCGCATGTTCAGTGAGCATGGAAGGGAGACGGATTG
TAATGCGGGCGAGAATAAGAAAGAAATGGCCGCCGCAGCCGTCGCAGTCG
TAAACACCATCAAGCCCAGTGGGACGAAGCATGAGGCGGGTCTAGCAGGA
GGATCAGGGGAAGGCGGAACTCACCCGCCCTGCTATCTGGAGGAGGCTTC
CTGGTGGAGCATTTTAACGTTTGGGTGAGTACGTGGCTGGGAAGTGGTAG
AGAGAGTGAGGGGGTATAGTAGCTCGAAAGCCTTTTCGAGCTGAAATACG
CACTGTTCCGACTCGTCCCCTTTCCTCCAGGTGGATGGGCCCCGTGATCA
AAGAGGGGAATCGTCGCCCACTGACAGAGGCGGACATGCCGGGTCTGGCC
AGGCGGGACCAAGCCGTGCACCTCCAAGGCCTGGTGGAGGTGAGGCAACA
GGAGAAAAAGAAGGGGGGAGGAAGGGAAAAAAAAAGGAAAAGGAGGGCAA
GGGGAGTGGGAACTCGGGTCGAAGACACTGCTCCGTAACCAGCTCATTAA
CCCCCTCCTTTCTTCTCCCTTCTCTTTTACTCTTCTCTTGTTTCTTTTGT
CGTTCCCACAGACCCAGTGGAAGGCGGAAATGAAGCTGCGCCCGGATGCC
CCTCAGCTGTGGCGGGCGATGGTGAGAGCCTTCTTCCCCGTGCAGCTGCC
CATGTATTTCCCCTTTGTGATGGTTACCACCGCCAAGATCGTGCAGGCGC
AGGTTGGGGTGAGGGGTCTCATCCGTGTGCTCGACACGGGGGGGGAGGCT
TTCGAGGTGAGGAAGGAGAAACGGCGAGATGAGACTGAAACACGGATGCT
GGCCAATCGACTTTCTCCTCATTTATTAACAAACGCCCTTATACATAATA
GGGCTACATGTATGCGGGTGTAATTGTCTTCACGGGCTGGGTCATGCTCA
TGCTCCATCACCAGGTACGTCTGTCGCCCTCTCTCACCCTCCCCTCCCTC
CATCCCTCCTGCCCTCCCTCAGTACTTACGCCTCCCTTTCTTCCCCCTTC
CCTTCCTTCTTCCCTCCCTCCAGGTTCAATTTATGGGCTGGCGCTTGGGC
CTTGC
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Coding sequence (CDS) from alignment at scaffold_61:56798..58102+

>mRNA_10659 ID=mRNA_10659|Name=jgi.p|Nanoce1779_2|378938|organism=Nannochloropsis oceanica|type=CDS|length=2223bp|location=Sequence derived from alignment at scaffold_61:56798..58102+ (Nannochloropsis oceanica)
ATGGCACCCAATAATGTGCCCATGGGCGCAGCTGAGGACAATGAGGGGGA
AGGGGCAGAGCCTGTGCCTATACGGCCATTCACCCCACGCCTGCACAGCC
GGCCTTCCGTCCGCATGTTCAGTGAGCATGGAAGGGAGACGGATTGTAAT
GCGGGCGAGAATAAGAAAGAAATGGCCGCCGCAGCCGTCGCAGTCGTAAA
CACCATCAAGCCCAGTGGGACGAAGCATGAGGCGGGTCTAGCAGGAGGAT
CAGGGGAAGGCGGAACTCACCCGCCCTGCTATCTGGAGGAGGCTTCCTGG
TGGAGCATTTTAACGTTTGGGTGGATGGGCCCCGTGATCAAAGAGGGGAA
TCGTCGCCCACTGACAGAGGCGGACATGCCGGGTCTGGCCAGGCGGGACC
AAGCCGTGCACCTCCAAGGCCTGGTGGAGACCCAGTGGAAGGCGGAAATG
AAGCTGCGCCCGGATGCCCCTCAGCTGTGGCGGGCGATGGTGAGAGCCTT
CTTCCCCGTGCAGCTGCCCATGTATTTCCCCTTTGTGATGGTTACCACCG
CCAAGATCGTGCAGGCGCAGGTTGGGGTGAGGGGTCTCATCCGTGTGCTC
GACACGGGGGGGGAGGCTTTCGAGGTGAGGAAGGAGAAACGGCGAGATGA
GACTGAAACACGGATGCTGGCCAATCGACTTTCTCCTCATTTATTAACAA
ACGCCCTTATACATAATAGGGCTACATGTATGCGGGTGTAAATGGCACCC
AATAATGTGCCCATGGGCGCAGCTGAGGACAATGAGGGGGAAGGGGCAGA
GCCTGTGCCTATACGGCCATTCACCCCACGCCTGCACAGCCGGCCTTCCG
TCCGCATGTTCAGTGAGCATGGAAGGGAGACGGATTGTAATGCGGGCGAG
AATAAGAAAGAAATGGCCGCCGCAGCCGTCGCAGTCGTAAACACCATCAA
GCCCAGTGGGACGAAGCATGAGGCGGGTCTAGCAGGAGGATCAGGGGAAG
GCGGAACTCACCCGCCCTGCTATCTGGAGGAGGCTTCCTGGTGGAGCATT
TTAACGTTTGGGTGGATGGGCCCCGTGATCAAAGAGGGGAATCGTCGCCC
ACTGACAGAGGCGGACATGCCGGGTCTGGCCAGGCGGGACCAAGCCGTGC
ACCTCCAAGGCCTGGTGGAGACCCAGTGGAAGGCGGAAATGAAGCTGCGC
CCGGATGCCCCTCAGCTGTGGCGGGCGATGGTGAGAGCCTTCTTCCCCGT
GCAGCTGCCCATGTATTTCCCCTTTGTGATGGTTACCACCGCCAAGATCG
TGCAGGCGCAGGTTGGGGTGAGGGGTCTCATCCGTGTGCTCGACACGGGG
GGGGAGGCTTTCGAGGTGAGGAAGGAGAAACGGCGAGATGAGACTGAAAC
ACGGATGCTGGCCAATCGACTTTCTCCTCATTTATTAACAAACGCCCTTA
TACATAATAGGGCTACATGTATGCGGGTGTAAATGGCACCCAATAATGTG
CCCATGGGCGCAGCTGAGGACAATGAGGGGGAAGGGGCAGAGCCTGTGCC
TATACGGCCATTCACCCCACGCCTGCACAGCCGGCCTTCCGTCCGCATGT
TCAGTGAGCATGGAAGGGAGACGGATTGTAATGCGGGCGAGAATAAGAAA
GAAATGGCCGCCGCAGCCGTCGCAGTCGTAAACACCATCAAGCCCAGTGG
GACGAAGCATGAGGCGGGTCTAGCAGGAGGATCAGGGGAAGGCGGAACTC
ACCCGCCCTGCTATCTGGAGGAGGCTTCCTGGTGGAGCATTTTAACGTTT
GGGTGGATGGGCCCCGTGATCAAAGAGGGGAATCGTCGCCCACTGACAGA
GGCGGACATGCCGGGTCTGGCCAGGCGGGACCAAGCCGTGCACCTCCAAG
GCCTGGTGGAGACCCAGTGGAAGGCGGAAATGAAGCTGCGCCCGGATGCC
CCTCAGCTGTGGCGGGCGATGGTGAGAGCCTTCTTCCCCGTGCAGCTGCC
CATGTATTTCCCCTTTGTGATGGTTACCACCGCCAAGATCGTGCAGGCGC
AGGTTGGGGTGAGGGGTCTCATCCGTGTGCTCGACACGGGGGGGGAGGCT
TTCGAGGTGAGGAAGGAGAAACGGCGAGATGAGACTGAAACACGGATGCT
GGCCAATCGACTTTCTCCTCATTTATTAACAAACGCCCTTATACATAATA
GGGCTACATGTATGCGGGTGTAA
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Synonyms
Publications