jgi.p|Nanoce1779_2|612065, mRNA_10658 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|612065
Unique Name	mRNA_10658
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1440
Alignment location	scaffold_61:53794..55513 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	612151
Track	FilteredModels2
ProteinId	612065

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_61	supercontig	scaffold_61:53794..55513 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|612065	gene_10658	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|612065	mRNA_10658-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10658	CDS_10658	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_61:53794..55513+
coding sequence from alignment at scaffold_61:53794..55513+

mRNA sequence

>mRNA_10658 ID=mRNA_10658|Name=jgi.p|Nanoce1779_2|612065|organism=Nannochloropsis oceanica|type=mRNA|length=1440bp
AATGTGGACACGCCAGGAGACCTGCCCGAGGCTGAAGACGCCCTCGCTTT
GGAGGCGACGGTGAAGCTGATGGAGGGGCTGCAGGGCAAGCCCTTCCCTC
GCGGGTATAATCCGGACATTGAGCACGTGGCTTTCACCCGAGAGGCCCTC
CACTTCTCCCACCGCCTACTCATGTTCTACGTTGCTGTCAAGGTGGCTCA
GATGATGGGGCACGGCTTTCTCCGCCTCATGGGTCACCGGCGATATCTGA
CCCCCACCCACAACCTCGTCTATTGGCATCGGCCCTGTCAGCAGCAAGAA
GGCTCGGTCAAGCAACCGCCTCTAATCTTTTTTCATGGCATTAGTCCAGG
TATCTGGTTCTATATTCCATTTCTTTCTCGTCTTGGCAAGGGTCGGGAGA
TTATCCTGCTGGAGGTGCCGCACATTATCACCCAGCTCTCCTTCGAAGCG
CCCGACCGGGCCGAGACAGTGGAGTCGCTGGCCGAGATCCTTTCCCTACA
TTCCATAGCTCATTGTGCCGTGGCCGGGCACTCCTTCGGCTCCATCGTTG
CCGGATGGGCCGTAGCAGCATTTCCATCCCAGGTCCAGCAGCTGGTGCTG
ATCGACCCGGTCTGCCTCCTCCTTTGCCTGCCCGACGTGGCAGTTAACTT
CCTGTACAGGTCTCCTCCCTCCAATCTCTTCCACCGCACTCTGAAAGATC
TGCTAGACCCCTCCAGCGAGATCACAGTCTCTCATGCCTTGAGGCGGCAC
TTCTGGTGGTACCAGAACGTGACGTGGCTGCAGGATGTGACCTGCCCCTT
GGTCGTGGCCCTCTCCTCCGAGGACGACATTGTCCCCTCGACCGCCATCC
GGGCCTACGTCCAGCGGCACTACGGCATGTGGGAAGTGAAACAGAAAGAG
AAGCAAGAAAGAGAGGAGTTGGAGGACCAGAGGAATAAGAAAGGAAATGG
ACGGCTAGTGTATTGGAAGGGTATTGGACACGGACAGATGCTGCTGTCGC
TGAGTGCACAGGACAGGTTGATCGAAGCCATGCACTGCCAAGCCAAGGAG
TCGGGGCTGGTGAGAATAGCAGCCAATGACATGACCGAGAAGCGCAGGCA
GAAACGGAAGGGATTGAGCGCCGCTTGAATTATACGTGTTGATCCTTGAA
GGGTATGTGCATAGGAGGAAAAAATATGGGACAAAGGAACCCTTTACAAG
AAGAGAAGTTTTTCACGCCGTTTTGGCAGGATTAAAGGGTGAAGGGATGG
AGGCAAATGATTTACTCATGCATAATGACTGTTACAATTTGTACAAGAGA
ATGTATGTTTAGTGCTGCTGAAGTGTGATGCATGTATGTTTGCGTCCTGT
CGTATCGTCAAGTCGAGCTAGGACCAGAGGTAAAAATGGATGCGAGGAGA
AAGAAAGGAAAAAACGAAGAACAAATGCTGTAAAAGAAAA

protein sequence of jgi.p|Nanoce1779_2|612065

>mRNA_10658-protein ID=mRNA_10658-protein|Name=jgi.p|Nanoce1779_2|612065|organism=Nannochloropsis oceanica|type=polypeptide|length=353bp
MEGLQGKPFPRGYNPDIEHVAFTREALHFSHRLLMFYVAVKVAQMMGHGF
LRLMGHRRYLTPTHNLVYWHRPCQQQEGSVKQPPLIFFHGISPGIWFYIP
FLSRLGKGREIILLEVPHIITQLSFEAPDRAETVESLAEILSLHSIAHCA
VAGHSFGSIVAGWAVAAFPSQVQQLVLIDPVCLLLCLPDVAVNFLYRSPP
SNLFHRTLKDLLDPSSEITVSHALRRHFWWYQNVTWLQDVTCPLVVALSS
EDDIVPSTAIRAYVQRHYGMWEVKQKEKQEREELEDQRNKKGNGRLVYWK
GIGHGQMLLSLSAQDRLIEAMHCQAKESGLVRIAANDMTEKRRQKRKGLS
AA*

mRNA from alignment at scaffold_61:53794..55513+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10658 ID=mRNA_10658|Name=jgi.p|Nanoce1779_2|612065|organism=Nannochloropsis oceanica|type=mRNA|length=1720bp|location=Sequence derived from alignment at scaffold_61:53794..55513+ (Nannochloropsis oceanica)
AATGTGGACACGCCAGGAGACCTGCCCGAGGCTGAAGACGCCCTCGCTTT
GGAGGCGACGGTGAAGCTGATGGAGGGGCTGCAGGGCAAGCCCTTCCCTC
GCGGGTATAATCCGGACATTGAGCACGTGGCTTTCACCCGAGAGGCCCTC
CACTTCTCCCACCGCCTACTCATGTTCTACGTTGCTGTCAAGGTGGCTCA
GATGATGGGGCACGGCTTTCTCCGCCTCATGGGTCACCGGCGATATCTGA
CCCCCACCCACAACCTCGTCTATTGGCATCGGCCCTGTCAGCAGCAAGAA
GGCTCGGTCAAGCAACCGCCTCTAATCTTTTTTCATGGCATTAGTCCAGG
TAGGTTGGTTACGATGGGGACTGGGGGTGGGTGGATGGTGAGTGTGTGGG
TTTGGGGGTTTGAGGGAATAATGCGTACGTGTGCGTAGAGCATAAAGTCA
TTTTACACTTACTCTCGCACGTTGCATCATTTTTTAATCCCCCCCTCTCT
TTGGATTCAGTCAGAAAGGAACCTAAAGGATTTTTGGTGGATTGTCGATC
CTTTGCCTATCCCTTCTCCTTCACCTTTCCCTCTCTCCCCCACCTCCCTC
TTCCTCCAATTCTACCACTCCCTCAAAAGGTATCTGGTTCTATATTCCAT
TTCTTTCTCGTCTTGGCAAGGGTCGGGAGATTATCCTGCTGGAGGTGCCG
CACATTATCACCCAGCTCTCCTTCGAAGCGCCCGACCGGGCCGAGACAGT
GGAGTCGCTGGCCGAGATCCTTTCCCTACATTCCATAGCTCATTGTGCCG
TGGCCGGGCACTCCTTCGGCTCCATCGTTGCCGGATGGGCCGTAGCAGCA
TTTCCATCCCAGGTCCAGCAGCTGGTGCTGATCGACCCGGTCTGCCTCCT
CCTTTGCCTGCCCGACGTGGCAGTTAACTTCCTGTACAGGTCTCCTCCCT
CCAATCTCTTCCACCGCACTCTGAAAGATCTGCTAGACCCCTCCAGCGAG
ATCACAGTCTCTCATGCCTTGAGGCGGCACTTCTGGTGGTACCAGAACGT
GACGTGGCTGCAGGATGTGACCTGCCCCTTGGTCGTGGCCCTCTCCTCCG
AGGACGACATTGTCCCCTCGACCGCCATCCGGGCCTACGTCCAGCGGCAC
TACGGCATGTGGGAAGTGAAACAGAAAGAGAAGCAAGAAAGAGAGGAGTT
GGAGGACCAGAGGAATAAGAAAGGAAATGGACGGCTAGTGTATTGGAAGG
GTATTGGACACGGACAGATGCTGCTGTCGCTGAGTGCACAGGACAGGTTG
ATCGAAGCCATGCACTGCCAAGCCAAGGAGTCGGGGCTGGTGAGAATAGC
AGCCAATGACATGACCGAGAAGCGCAGGCAGAAACGGAAGGGATTGAGCG
CCGCTTGAATTATACGTGTTGATCCTTGAAGGGTATGTGCATAGGAGGAA
AAAATATGGGACAAAGGAACCCTTTACAAGAAGAGAAGTTTTTCACGCCG
TTTTGGCAGGATTAAAGGGTGAAGGGATGGAGGCAAATGATTTACTCATG
CATAATGACTGTTACAATTTGTACAAGAGAATGTATGTTTAGTGCTGCTG
AAGTGTGATGCATGTATGTTTGCGTCCTGTCGTATCGTCAAGTCGAGCTA
GGACCAGAGGTAAAAATGGATGCGAGGAGAAAGAAAGGAAAAAACGAAGA
ACAAATGCTGTAAAAGAAAA

Coding sequence (CDS) from alignment at scaffold_61:53794..55513+

>mRNA_10658 ID=mRNA_10658|Name=jgi.p|Nanoce1779_2|612065|organism=Nannochloropsis oceanica|type=CDS|length=2118bp|location=Sequence derived from alignment at scaffold_61:53794..55513+ (Nannochloropsis oceanica)
ATGGAGGGGCTGCAGGGCAAGCCCTTCCCTCGCGGGTATAATCCGGACAT
TGAGCACGTGGCTTTCACCCGAGAGGCCCTCCACTTCTCCCACCGCCTAC
TCATGTTCTACGTTGCTGTCAAGGTGGCTCAGATGATGGGGCACGGCTTT
CTCCGCCTCATGGGTCACCGGCGATATCTGACCCCCACCCACAACCTCGT
CTATTGGCATCGGCCCTGTCAGCAGCAAGAAGGCTCGGTCAAGCAACCGC
CTCTAATCTTTTTTCATGGCATTAGTCCAGGTATCTGGTTCTATATTCCA
TTTCTTTCTCGTCTTGGCAAGGGTCGGGAGATTATCCTGCTGGAGGTGCC
GCACATTATCACCCAGCTCTCCTTCGAAGCGCCCGACCGGGCCGAGACAG
TGGAGTCGCTGGCCGAGATCCTTTCCCTACATTCCATAGCTCATTGTGCC
GTGGCCGGGCACTCCTTCGGCTCCATCGTTGCCGGATGGGCCGTAGCAGC
ATTTCCATCCCAGGTCCAGCAGCTGGTGCTGATCGACCCGGTCTGCCTCC
TCCTTTGCCTGCCCGACGTGGCAGTTAACTTCCTGTACAGGTCTCCTCCC
TCCAATCTCTTCCACCGCACTCTGAAAGATCTGCTAGACCCCTCCAGCGA
GATCACAGTCTCTCATGCCTTGAGGCGGCACTTCTGGTGGTACCAGAACG
TGACGTGGCTGCAGGATGTGACCTGCCCCTTGGTCGTGGCCCTCTCCTCC
GAGGACGACATTGTCCCCTCGACCGCCATCCGGGCCTACGTCCAGCGGCA
CTACGGCATGTGGGAAGTGAAACAGAAAGAGAAGCAAGAAAGAGAGGAGT
TGGAGGACCAGAGGAATAAGAAAGGAAATGGACGGCTAGTGTATTGGAAG
GGTATTGGACACGGACAGATGCTGCTGTCGCTGAGTGCACAGGACAGGTT
GATCGAAGCCATGCACTGCCAAGCCAAGGAGTCGGGGCTGGTGAGAATAG
CAGCCAATGACATGACCGAGAAGCGCAGGCAGAAACGGAAGGGATTGAGC
GCCGCTTGAATGGAGGGGCTGCAGGGCAAGCCCTTCCCTCGCGGGTATAA
TCCGGACATTGAGCACGTGGCTTTCACCCGAGAGGCCCTCCACTTCTCCC
ACCGCCTACTCATGTTCTACGTTGCTGTCAAGGTGGCTCAGATGATGGGG
CACGGCTTTCTCCGCCTCATGGGTCACCGGCGATATCTGACCCCCACCCA
CAACCTCGTCTATTGGCATCGGCCCTGTCAGCAGCAAGAAGGCTCGGTCA
AGCAACCGCCTCTAATCTTTTTTCATGGCATTAGTCCAGGTATCTGGTTC
TATATTCCATTTCTTTCTCGTCTTGGCAAGGGTCGGGAGATTATCCTGCT
GGAGGTGCCGCACATTATCACCCAGCTCTCCTTCGAAGCGCCCGACCGGG
CCGAGACAGTGGAGTCGCTGGCCGAGATCCTTTCCCTACATTCCATAGCT
CATTGTGCCGTGGCCGGGCACTCCTTCGGCTCCATCGTTGCCGGATGGGC
CGTAGCAGCATTTCCATCCCAGGTCCAGCAGCTGGTGCTGATCGACCCGG
TCTGCCTCCTCCTTTGCCTGCCCGACGTGGCAGTTAACTTCCTGTACAGG
TCTCCTCCCTCCAATCTCTTCCACCGCACTCTGAAAGATCTGCTAGACCC
CTCCAGCGAGATCACAGTCTCTCATGCCTTGAGGCGGCACTTCTGGTGGT
ACCAGAACGTGACGTGGCTGCAGGATGTGACCTGCCCCTTGGTCGTGGCC
CTCTCCTCCGAGGACGACATTGTCCCCTCGACCGCCATCCGGGCCTACGT
CCAGCGGCACTACGGCATGTGGGAAGTGAAACAGAAAGAGAAGCAAGAAA
GAGAGGAGTTGGAGGACCAGAGGAATAAGAAAGGAAATGGACGGCTAGTG
TATTGGAAGGGTATTGGACACGGACAGATGCTGCTGTCGCTGAGTGCACA
GGACAGGTTGATCGAAGCCATGCACTGCCAAGCCAAGGAGTCGGGGCTGG
TGAGAATAGCAGCCAATGACATGACCGAGAAGCGCAGGCAGAAACGGAAG
GGATTGAGCGCCGCTTGA

Synonyms

Publications