jgi.p|Nanoce1779_2|612061, mRNA_10657 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|612061
Unique NamemRNA_10657
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1261
Alignment locationscaffold_61:52558..53818 +

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Properties
Property NameValue
TranscriptId612147
TrackFilteredModels2
ProteinId612061
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_61supercontigscaffold_61:52558..53818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612061gene_10657Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612061mRNA_10657-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10657CDS_10657Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10657 ID=mRNA_10657|Name=jgi.p|Nanoce1779_2|612061|organism=Nannochloropsis oceanica|type=mRNA|length=1261bp
CAGCTTTTCAAAAATAAGCAGGTCGATCCTTTGCTACCGCACGGGCTCTC
TTACGCCGTCGACCCTAGCACTCAGCCCCAACTTTCTGGTTCTCGCTACA
CCATGACAACTTCTTTAAGAGGGCAAATACAACACGACGAAAACTACTCT
ATCGCCTGCCACCCCTCGGCATCGAGCTTCCCCTCAGTGGAATCCTCAGA
GGAAGGCACGGGTTCTGCGACACGACGTATGCTCTCCCAAAACCTCTTTC
TTCGACGTGTCACTTTTGCACATACACCTTGTACCCCGGCATTTACATAA
GGGCGACAGAACCTTTACCCCTGCAGTCGAAGGTACTCTCTCACACACAT
TGTTATTCTCTGCCGGGTGACTGCCGACCCGTCGTGTCCAATCAAGCGCA
CCCACTGGCCAATGAATACTTGACTCCATTCGCTCAAAGCAGTCATGTGC
ATCCCCTTTCACGATTCTGCACTCGTGACTCCACAGACGGAGTCGGGGAC
GACTTCTTCTGGTCGCTTAGCGGAGTGTCGTTGTCGTCTTGGCTCATTAT
ATTCTTTTTCCAGAACGTAATGCTCTGCGTCTACCCGGCCATACACTCTG
TGCGCCTATTTCCAACCCAATCAATACAAGTACTCGCCCCCCTTTTCCAG
GTACAGCTCGAAAAGACGAATTCACCTACATACCCACTGTCCTCCTCCCC
TCGATTCCCACTCCGGTACCCCCCCGGCCTTGTGTGCTGCTGCCGAGGGG
GGATTGACCCCTACCTCCTGTTTCCCTTTGGGTCGATCCTTTTGCACATT
TGGTTACCTGGTCTTTTCCCGATGACCATACTTACCTCCCATCTTTTTCA
CCCTTTTCTCTCCTCCTCCACGCTACAACACCCCACCAACAGCCATGGAA
TGCCGCTCTTTCCAGGCGGCCCCCTCCTCCCTTTTCTCCTTTATTCTGAT
GCTAGACACGACCTGGCTAGTCGTCATTGCGTGGTCCAGTCTGGAGATCC
TCTTTTACTTCGTCATCTGCCGCCTCATCCACCCCCGGATCGAGCGGCTG
CGCACCGCGCCCTCCCACCCTTCCCAGCAACCCCCGCGCGAGTGCCTGGC
CAGGCTGACTGACACTTTGCATCGGCTACAAGGTGCCTACAGCCCAGAAA
CATTCTGGTCGGGTTGGTTCAAGGGGGCGGCGCATGCGGAGATCTGGCGG
GAGAACGTGAAGGCTTTCTTGTGCTGGGCCATCTGGAATGTGGACACGCC
AGGAGACCTGC
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protein sequence of jgi.p|Nanoce1779_2|612061

>mRNA_10657-protein ID=mRNA_10657-protein|Name=jgi.p|Nanoce1779_2|612061|organism=Nannochloropsis oceanica|type=polypeptide|length=181bp
MLCVYPAIHSVRLFPTQSIQVLAPLFQVQLEKTNSPTYPLSSSPRFPLRY
PPGLVCCCRGGIDPYLLFPFGSILLHIWLPGLFPMTILTSHLFHPFLSSS
TLQHPTNSHGMPLFPGGPLLPFLLYSDARHDLASRHCVVQSGDPLLLRHL
PPHPPPDRAAAHRALPPFPATPARVPGQAD*
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mRNA from alignment at scaffold_61:52558..53818+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10657 ID=mRNA_10657|Name=jgi.p|Nanoce1779_2|612061|organism=Nannochloropsis oceanica|type=mRNA|length=1261bp|location=Sequence derived from alignment at scaffold_61:52558..53818+ (Nannochloropsis oceanica)
CAGCTTTTCAAAAATAAGCAGGTCGATCCTTTGCTACCGCACGGGCTCTC
TTACGCCGTCGACCCTAGCACTCAGCCCCAACTTTCTGGTTCTCGCTACA
CCATGACAACTTCTTTAAGAGGGCAAATACAACACGACGAAAACTACTCT
ATCGCCTGCCACCCCTCGGCATCGAGCTTCCCCTCAGTGGAATCCTCAGA
GGAAGGCACGGGTTCTGCGACACGACGTATGCTCTCCCAAAACCTCTTTC
TTCGACGTGTCACTTTTGCACATACACCTTGTACCCCGGCATTTACATAA
GGGCGACAGAACCTTTACCCCTGCAGTCGAAGGTACTCTCTCACACACAT
TGTTATTCTCTGCCGGGTGACTGCCGACCCGTCGTGTCCAATCAAGCGCA
CCCACTGGCCAATGAATACTTGACTCCATTCGCTCAAAGCAGTCATGTGC
ATCCCCTTTCACGATTCTGCACTCGTGACTCCACAGACGGAGTCGGGGAC
GACTTCTTCTGGTCGCTTAGCGGAGTGTCGTTGTCGTCTTGGCTCATTAT
ATTCTTTTTCCAGAACGTAATGCTCTGCGTCTACCCGGCCATACACTCTG
TGCGCCTATTTCCAACCCAATCAATACAAGTACTCGCCCCCCTTTTCCAG
GTACAGCTCGAAAAGACGAATTCACCTACATACCCACTGTCCTCCTCCCC
TCGATTCCCACTCCGGTACCCCCCCGGCCTTGTGTGCTGCTGCCGAGGGG
GGATTGACCCCTACCTCCTGTTTCCCTTTGGGTCGATCCTTTTGCACATT
TGGTTACCTGGTCTTTTCCCGATGACCATACTTACCTCCCATCTTTTTCA
CCCTTTTCTCTCCTCCTCCACGCTACAACACCCCACCAACAGCCATGGAA
TGCCGCTCTTTCCAGGCGGCCCCCTCCTCCCTTTTCTCCTTTATTCTGAT
GCTAGACACGACCTGGCTAGTCGTCATTGCGTGGTCCAGTCTGGAGATCC
TCTTTTACTTCGTCATCTGCCGCCTCATCCACCCCCGGATCGAGCGGCTG
CGCACCGCGCCCTCCCACCCTTCCCAGCAACCCCCGCGCGAGTGCCTGGC
CAGGCTGACTGACACTTTGCATCGGCTACAAGGTGCCTACAGCCCAGAAA
CATTCTGGTCGGGTTGGTTCAAGGGGGCGGCGCATGCGGAGATCTGGCGG
GAGAACGTGAAGGCTTTCTTGTGCTGGGCCATCTGGAATGTGGACACGCC
AGGAGACCTGC
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Coding sequence (CDS) from alignment at scaffold_61:52558..53818+

>mRNA_10657 ID=mRNA_10657|Name=jgi.p|Nanoce1779_2|612061|organism=Nannochloropsis oceanica|type=CDS|length=543bp|location=Sequence derived from alignment at scaffold_61:52558..53818+ (Nannochloropsis oceanica)
ATGCTCTGCGTCTACCCGGCCATACACTCTGTGCGCCTATTTCCAACCCA
ATCAATACAAGTACTCGCCCCCCTTTTCCAGGTACAGCTCGAAAAGACGA
ATTCACCTACATACCCACTGTCCTCCTCCCCTCGATTCCCACTCCGGTAC
CCCCCCGGCCTTGTGTGCTGCTGCCGAGGGGGGATTGACCCCTACCTCCT
GTTTCCCTTTGGGTCGATCCTTTTGCACATTTGGTTACCTGGTCTTTTCC
CGATGACCATACTTACCTCCCATCTTTTTCACCCTTTTCTCTCCTCCTCC
ACGCTACAACACCCCACCAACAGCCATGGAATGCCGCTCTTTCCAGGCGG
CCCCCTCCTCCCTTTTCTCCTTTATTCTGATGCTAGACACGACCTGGCTA
GTCGTCATTGCGTGGTCCAGTCTGGAGATCCTCTTTTACTTCGTCATCTG
CCGCCTCATCCACCCCCGGATCGAGCGGCTGCGCACCGCGCCCTCCCACC
CTTCCCAGCAACCCCCGCGCGAGTGCCTGGCCAGGCTGACTGA
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Synonyms
Publications