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Properties
| Property Name | Value |
|---|
| TranscriptId | 612137 |
| Track | FilteredModels2 |
| ProteinId | 612051 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_61 | supercontig | scaffold_61:48345..52165 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_10656 ID=mRNA_10656|Name=jgi.p|Nanoce1779_2|612051|organism=Nannochloropsis oceanica|type=mRNA|length=3218bp
CAACAGCCCCACACGAAACAGTCCCAAAATCATGAAGTTCCTCGTCACCT
CTGCCCTGGCATATCTTGCTCTTGCACCCTTTGCCCTGGCTGTCCCTGTC
ACCACGGTGGCTGCCGAGGCCCTGACGTCGCTCAAGACCGCACAGATTAT
TCCGGACGTGATCAGCAGCTTTGTGCCCACGGCTACGCTGACAGTGGACT
ACGGCAGAATGACCCCTGTTAAAATGGGAGAGGAGATGCTGCCCTCAGAG
GTCGCTAAAGAGCCCGTGGTCACTTTCACCGGCACGGATCCCAAGAAGAT
GTACACCCTGGTCATGACGGACCCTGGCGTTCTCGACATTAAGACTCTGC
GTGTCGAGCAGCAGAGTGCGTGGCAGTGGCTGCACTGGATCGTGGTGAAC
GTGCCGGGCGACATGGCAGTCCCCGCGGCTGGCAAGGTCGTCCAGCCCTA
CGGCCCGCCTGCACCGCCGGCTGGCAACCACCGCTATACCTTCCTCCTGT
TTGAGCAAAAGGCTGAGATCAACCCCGCAACCCCTAAGGAGCGCGGCTCC
TTCGACACTCGCGCTTTTGCCGCCGCCAACAGCCTTACCCCCGTGGGTGG
CTTCTACTTCCTGGCCCAGCCCGAGGCGGCTCAGTAAAGCGTGGATGCAG
AGTTTGAAGGGAGAAAAGAAGCAAGGAGTATACATTCCTGGATTCTTTTA
ATGAGGATATGGCTGGGAATTGCCGAAGAGAGACGGAATTGCCCATGCCT
CCCAGACGTACGGAGCCGATTGCCAAAAGGGTGCGGCGTGTTTGCTTGTC
GAGGTTGAGCCCTGTCCAGTTATTAAGTTGTACATTTATATGATGATCAA
GAGGGAAAATCTGCGCAAACGTGTACAAGAAGCAGTCGAGTGTCATGACA
GATTGAGTGTCTTCGCTCTTGCTACAGATCGGGGAGTCAGGATGTGTATT
TTTGGTACTTTGCTATTTGTGTTCTCCTCTCATCATGTATTCAATTTGTT
GGCAGTTTCTTTGAATCTCCCTCGTCCATTGACCACCCGACGTTATATCC
GCCTCTCTTCGGCTTACTACATGCTCTCTTTTTAAGTTATTTTTTATTTT
TATTTTTGCTCTCATTTGTTGGTTTTTTTAAGAGAATTTTATTCTTTCTC
GGACATATCTCGCTGAGTGTGCATTATCCGAGGACTACTAAAATGACGAA
TAGAACAGATCTGCAGCATCATCACTTTTACCTGGCTAAATTTCAATCTT
CCGCATTTTTATTCATGCTCTCAATAAGTGTCGACTTTTTATTCTCTAGT
CCTCCCCTCTTCTCCTGCTTCTCCTCCTCCATCACCTCCTTTATTTCTCC
TCCTGACGCGATATCGCGGTCCACAATTACTTAGCAAGAAAGTGACATCA
GAGAACTTGCTTCCGCGCCCGATAAGAAGTGATGTGCGGGGATCGGTGAG
TCATAGCTTGAAGCCATTTTGTAGGGCGAGATCCGACTCCCCACCGTCAT
CCTGGCTGCGCAACCCATTACATGGGTCCTCACAATAAACCATATGGGGC
TATGTATGAACCATTTTATGGGGGCAGGTACCAAACCGACTACCAAAGAA
CAAAATATATATGCTGTAGCAATAAAATACCAACCAAACAAACCACCAAT
CGACAAGGTTTCCAAAAAAACAGAACAATCAAATGCACAAACAGACAATC
GACCGATAACCAACATCGATCTGCCCACGGGGCACGCGGTCATTGGACAG
CACACGATTCAACGCCCAGCAACGACAACAACATGGGGAAGTGGACGGCT
CGAATCGCTCAAAACGCCAATCAGGACCAAACCCGGAGAAGTACCACAAT
ATCATGGACGTCGTGTCGTCCACTACCTTCCGTCCTTCGACGGGGAGGCC
AGGGCATCGACTTCACTGCACCACGTCCGAAAAAACAAATCTTCACCGAC
GACGAAACTCGAGGGGACCAGCCGCCCCGCGGCCTCAATATCAGCAGTCG
CGCCATGGCGATGAGCGTTGAAGTGTCGTCGTAGCAGTCCACGGCAGTCC
ACGCCCTCAAGATTCCCTTCTTCTTGCTCAGTGTGATCTCCTCCTCTTAG
TAAGGCGCGTGTGTGCAAAGGAATTGGGGGTGGTATTTTTCCTGAAATGT
GGTGCTTTTGTTTTCTTTAAGCTTCTCTGGCTGCAGCACAGGCAGCGGAG
AGGGTAATGACAACTCCCGTGAACACTGACACTTGTACTGCGGGTTTCGA
CCTTCGGAAAGTGTTGCTCCTGAGCCTTGCTTCTTGCCCTTGGTCAATTT
CTTACGTCCCATTCCCTTTTCGTCTCTGTCTCCAACACGCTCACACACAT
GTACGACTCATCGGTCCGCTCACATCGTCCTTAACAGCCACGGCTAGCGA
TGCGACCGACAAGATTCCATTTCTAGGCAGACCTTCTACACACAACAAGG
ATGGATAATATTCTCCCGCAGGACGACTCGGACCCTAGCACCGGTGGCGA
CGGCAACCACCATCATGTGAACTCCCTCCACCAACAGCACACTCACCACC
TCAGCCACCATCACCTTGTACTGACGCACCATTCCCAACTTCTGGGCGAT
GAGGGTGCGGAGGATGGCCTGGACATTAACTGCATGGTGGTGATGGACTC
CGAGGAGGGGGGGAAAGGCAGCGGGGGGGATGAAGAGGGAGAAGGAGGGG
TGGATGCCAGCGTACATCACATCCACCACCACCTTCATCACGATGCAGGG
ACCGAGGACGAGGACCTGGTTTTGTTGCTGGCGCGGGAGGACCAGCAGCA
AACCGAGGAAAGAATCTTAATCCCCTCGGCGGCGGATGCCTGGCTGCAGC
CGATGCAGCAGGACTCAAGGCCTTCCTATATCCTTCCTTCCGCGCCGCCA
CTGGAGCCGTCGGGGCCGCCATTGTACTACCAGTCTTTAGGGTTGCCACA
CTGCACTGCAGGTCCTCTTCAGCACCAGCAGAGTCCTCTTCAGCACCAGT
ACCAGCAGTTTGTGACCCTTCCCCTTCTTCACGTGTTAGATAATCGAAAT
GTGTCATCAACACTACCACCACCATCGGCCGCACGAACAGCAATAGGGAC
AGTATCAAGAGCGCCTTCTTTGAGTTCGCCATCACAGCAGCAGCAACAAC
AACAACAGCTGCAACAGATGGAGCGCCGACGGCAGCGGGATGATGAGGAA
ATGACGGGGTCGCCTCAG back to topprotein sequence of jgi.p|Nanoce1779_2|612051 >mRNA_10656-protein ID=mRNA_10656-protein|Name=jgi.p|Nanoce1779_2|612051|organism=Nannochloropsis oceanica|type=polypeptide|length=202bp
MKFLVTSALAYLALAPFALAVPVTTVAAEALTSLKTAQIIPDVISSFVPT
ATLTVDYGRMTPVKMGEEMLPSEVAKEPVVTFTGTDPKKMYTLVMTDPGV
LDIKTLRVEQQSAWQWLHWIVVNVPGDMAVPAAGKVVQPYGPPAPPAGNH
RYTFLLFEQKAEINPATPKERGSFDTRAFAAANSLTPVGGFYFLAQPEAA
Q* back to topmRNA from alignment at scaffold_61:48345..52165- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_10656 ID=mRNA_10656|Name=jgi.p|Nanoce1779_2|612051|organism=Nannochloropsis oceanica|type=mRNA|length=3821bp|location=Sequence derived from alignment at scaffold_61:48345..52165- (Nannochloropsis oceanica)
CAACAGCCCCACACGAAACAGTCCCAAAATCATGAAGTTCCTCGTCACCT
CTGCCCTGGCATATCTTGCTCTTGGTTAGTACTCTTCTTTCTTCTTTTTG
TTGCCTGTCCATCCTTTACCTCCTTCCATTTTCCCAAGCTTCACCTCAAC
CCAGCCATTATCATGGTCGTGTCCTTTTCTTCAACACTTCCTTCCCCTTC
TCATTCCCTGTTCACCAAAATCTCGATACATGGCCCTTTCTTTTTTCTTC
AGCACCCTTTGCCCTGGCTGTCCCTGTCACCACGGTGGCTGCCGAGGCCC
TGACGTCGCTCAAGACCGCACAGATTATTCCGGACGTGATCAGCAGCTTT
GTGCCCACGGCTACGCTGACAGTGGACTACGGCAGAATGACCCCTGTTAA
AATGGGAGAGGAGATGCTGCCCTCAGAGGTCGCTAAAGAGCCCGTGGTCA
CTTTCACCGGCACGGATCCCAAGAAGGTGTGAAGAAGTAGGGAAGAATGG
CTGGGTGGGCAGGCGGGAAGGGTGAGAGGTTGAGATAAGAGATGACAGAT
TGGCCATTGTAGAAAGAATAAGAGGGGTTTCCACAAGACTCATTTATAGA
CGAGAGCGACAGAAATATTCACTCCCCATGCTTTCTCACACTCACACTCC
TCTGTTTTCCCCGCACTCGCCACATACCCACGTCACATCGTATGCTTGTC
TTACACTCCTGCATTCCTTCCCTTCCCGCTCCCGCCCCTTATATCCCCTT
TCCCTCCATCTCTCTACAGATGTACACCCTGGTCATGACGGACCCTGGCG
TTCTCGACATTAAGACTCTGCGTGTCGAGCAGCAGAGTGCGTGGCAGTGG
CTGCACTGGATCGTGGTGAACGTGCCGGGCGACATGGCAGTCCCCGCGGC
TGGCAAGGTCGTCCAGCCCTACGGCCCGCCTGCACCGCCGGCTGGCAACC
ACCGCTATACCTTCCTCCTGTTTGAGCAAAAGGCTGAGATCAACCCCGCA
ACCCCTAAGGAGCGCGGCTCCTTCGACACTCGCGCTTTTGCCGCCGCCAA
CAGCCTTACCCCCGTGGGTGGCTTCTACTTCCTGGCCCAGCCCGAGGCGG
CTCAGTAAAGCGTGGATGCAGAGTTTGAAGGGAGAAAAGAAGCAAGGAGT
ATACATTCCTGGATTCTTTTAATGAGGATATGGCTGGGAATTGCCGAAGA
GAGACGGAATTGCCCATGCCTCCCAGACGTACGGAGCCGATTGCCAAAAG
GGTGCGGCGTGTTTGCTTGTCGAGGTTGAGCCCTGTCCAGTTATTAAGTT
GTACATTTATATGATGATCAAGAGGGAAAATCTGCGCAAACGTGTACAAG
AAGCAGTCGAGTGTCATGACAGATTGAGTGTCTTCGCTCTTGCTACAGAT
CGGGGAGTCAGGATGTGTATTTTTGGTACTTTGCTATTTGTGTTCTCCTC
TCATCATGTATTCAATTTGTTGGCAGTTTCTTTGAATCTCCCTCGTCCAT
TGACCACCCGACGTTATATCCGCCTCTCTTCGGCTTACTACATGCTCTCT
TTTTAAGTTATTTTTTATTTTTATTTTTGCTCTCATTTGTTGGTTTTTTT
AAGAGAATTTTATTCTTTCTCGGACATATCTCGCTGAGTGTGCATTATCC
GAGGACTACTAAAATGACGAATAGAACAGATCTGCAGCATCATCACTTTT
ACCTGGCTAAATTTCAATCTTCCGCATTTTTATTCATGCTCTCAATAAGT
GTCGACTTTTTATTCTCTAGTCCTCCCCTCTTCTCCTGCTTCTCCTCCTC
CATCACCTCCTTTATTTCTCCTCCTGACGCGATATCGCGGTCCACAATTA
CTTAGCAAGAAAGTGACATCAGAGAACTTGCTTCCGCGCCCGATAAGAAG
TGATGTGCGGGGATCGGTGAGTCATAGCTTGAAGCCATTTTGTAGGGCGA
GATCCGACTCCCCACCGTCATCCTGGCTGCGCAACCCATTACATGGGTCC
TCACAATAAACCATATGGGGCTATGTATGAACCATTTTATGGGGGCAGGT
ACCAAACCGACTACCAAAGAACAAAATATATATGCTGTAGCAATAAAATA
CCAACCAAACAAACCACCAATCGACAAGGTTTCCAAAAAAACAGAACAAT
CAAATGCACAAACAGACAATCGACCGATAACCAACATCGATCTGCCCACG
GGGCACGCGGTCATTGGACAGCACACGATTCAACGCCCAGCAACGACAAC
AACATGGGGAAGTGGACGGCTCGAATCGCTCAAAACGCCAATCAGGACCA
AACCCGGAGAAGTACCACAATATCATGGACGTCGTGTCGTCCACTACCTT
CCGTCCTTCGACGGGGAGGCCAGGGCATCGACTTCACTGCACCACGTCCG
AAAAAACAAATCTTCACCGACGACGAAACTCGAGGGGACCAGCCGCCCCG
CGGCCTCAATATCAGCAGTCGCGCCATGGCGATGAGCGTTGAAGTGTCGT
CGTAGCAGTCCACGGCAGTCCACGCCCTCAAGATTCCCTTCTTCTTGCTC
AGTGTGATCTCCTCCTCTTAGTAAGGCGCGTGTGTGCAAAGGAATTGGGG
GTGGTATTTTTCCTGAAATGTGGTGCTTTTGTTTTCTTTAAGCTTCTCTG
GCTGCAGCACAGGCAGCGGAGAGGGTAATGACAACTCCCGTGAACACTGA
CACTTGTACTGCGGGTTTCGACCTTCGGAAAGTGTTGCTCCTGAGCCTTG
CTTCTTGCCCTTGGTCAATTTCTTACGTCCCATTCCCTTTTCGTCTCTGT
CTCCAACACGCTCACACACATGTACGACTCATCGGTCCGCTCACATCGTC
CTTAACAGCCACGGCTAGCGATGCGACCGACAAGGTGAGTGTGTTGGAGG
AGATACAGTCCACACGCAACACGATAATGAGGTACTCGCAGAGGGGATCG
ATCGCGTCGTACCGCGCAGCATGCATGTGCCATGTACTTACTCACACTCC
GTACTCTGTACTGAAGATTCCATTTCTAGGCAGACCTTCTACACACAACA
AGGATGGATAATATTCTCCCGCAGGACGACTCGGACCCTAGCACCGGTGG
CGACGGCAACCACCATCATGTGAACTCCCTCCACCAACAGCACACTCACC
ACCTCAGCCACCATCACCTTGTACTGACGCACCATTCCCAACTTCTGGGC
GATGAGGGTGCGGAGGATGGCCTGGACATTAACTGCATGGTGGTGATGGA
CTCCGAGGAGGGGGGGAAAGGCAGCGGGGGGGATGAAGAGGGAGAAGGAG
GGGTGGATGCCAGCGTACATCACATCCACCACCACCTTCATCACGATGCA
GGGACCGAGGACGAGGACCTGGTTTTGTTGCTGGCGCGGGAGGACCAGCA
GCAAACCGAGGAAAGAATCTTAATCCCCTCGGCGGCGGATGCCTGGCTGC
AGCCGATGCAGCAGGACTCAAGGCCTTCCTATATCCTTCCTTCCGCGCCG
CCACTGGAGCCGTCGGGGCCGCCATTGTACTACCAGTCTTTAGGGTTGCC
ACACTGCACTGCAGGTCCTCTTCAGCACCAGCAGAGTCCTCTTCAGCACC
AGTACCAGCAGTTTGTGACCCTTCCCCTTCTTCACGTGTTAGATAATCGA
AATGTGTCATCAACACTACCACCACCATCGGCCGCACGAACAGCAATAGG
GACAGTATCAAGAGCGCCTTCTTTGAGTTCGCCATCACAGCAGCAGCAAC
AACAACAACAGCTGCAACAGATGGAGCGCCGACGGCAGCGGGATGATGAG
GAAATGACGGGGTCGCCTCAG back to topCoding sequence (CDS) from alignment at scaffold_61:48345..52165- >mRNA_10656 ID=mRNA_10656|Name=jgi.p|Nanoce1779_2|612051|organism=Nannochloropsis oceanica|type=CDS|length=1818bp|location=Sequence derived from alignment at scaffold_61:48345..52165- (Nannochloropsis oceanica)
ATGTACACCCTGGTCATGACGGACCCTGGCGTTCTCGACATTAAGACTCT
GCGTGTCGAGCAGCAGAGTGCGTGGCAGTGGCTGCACTGGATCGTGGTGA
ACGTGCCGGGCGACATGGCAGTCCCCGCGGCTGGCAAGGTCGTCCAGCCC
TACGGCCCGCCTGCACCGCCGGCTGGCAACCACCGCTATACCTTCCTCCT
GTTTGAGCAAAAGGCTGAGATCAACCCCGCAACCCCTAAGGAGCGCGGCT
CCTTCGACACTCGCGCTTTTGCCGCCGCCAACAGCCTTACCCCCGTGGGT
GGCTTCTACTTCCTGGCCCAGCCCGAGGCGGCTCAGTAACACCCTTTGCC
CTGGCTGTCCCTGTCACCACGGTGGCTGCCGAGGCCCTGACGTCGCTCAA
GACCGCACAGATTATTCCGGACGTGATCAGCAGCTTTGTGCCCACGGCTA
CGCTGACAGTGGACTACGGCAGAATGACCCCTGTTAAAATGGGAGAGGAG
ATGCTGCCCTCAGAGGTCGCTAAAGAGCCCGTGGTCACTTTCACCGGCAC
GGATCCCAAGAAGATGAAGTTCCTCGTCACCTCTGCCCTGGCATATCTTG
CTCTTGATGTACACCCTGGTCATGACGGACCCTGGCGTTCTCGACATTAA
GACTCTGCGTGTCGAGCAGCAGAGTGCGTGGCAGTGGCTGCACTGGATCG
TGGTGAACGTGCCGGGCGACATGGCAGTCCCCGCGGCTGGCAAGGTCGTC
CAGCCCTACGGCCCGCCTGCACCGCCGGCTGGCAACCACCGCTATACCTT
CCTCCTGTTTGAGCAAAAGGCTGAGATCAACCCCGCAACCCCTAAGGAGC
GCGGCTCCTTCGACACTCGCGCTTTTGCCGCCGCCAACAGCCTTACCCCC
GTGGGTGGCTTCTACTTCCTGGCCCAGCCCGAGGCGGCTCAGTAACACCC
TTTGCCCTGGCTGTCCCTGTCACCACGGTGGCTGCCGAGGCCCTGACGTC
GCTCAAGACCGCACAGATTATTCCGGACGTGATCAGCAGCTTTGTGCCCA
CGGCTACGCTGACAGTGGACTACGGCAGAATGACCCCTGTTAAAATGGGA
GAGGAGATGCTGCCCTCAGAGGTCGCTAAAGAGCCCGTGGTCACTTTCAC
CGGCACGGATCCCAAGAAGATGAAGTTCCTCGTCACCTCTGCCCTGGCAT
ATCTTGCTCTTGATGTACACCCTGGTCATGACGGACCCTGGCGTTCTCGA
CATTAAGACTCTGCGTGTCGAGCAGCAGAGTGCGTGGCAGTGGCTGCACT
GGATCGTGGTGAACGTGCCGGGCGACATGGCAGTCCCCGCGGCTGGCAAG
GTCGTCCAGCCCTACGGCCCGCCTGCACCGCCGGCTGGCAACCACCGCTA
TACCTTCCTCCTGTTTGAGCAAAAGGCTGAGATCAACCCCGCAACCCCTA
AGGAGCGCGGCTCCTTCGACACTCGCGCTTTTGCCGCCGCCAACAGCCTT
ACCCCCGTGGGTGGCTTCTACTTCCTGGCCCAGCCCGAGGCGGCTCAGTA
ACACCCTTTGCCCTGGCTGTCCCTGTCACCACGGTGGCTGCCGAGGCCCT
GACGTCGCTCAAGACCGCACAGATTATTCCGGACGTGATCAGCAGCTTTG
TGCCCACGGCTACGCTGACAGTGGACTACGGCAGAATGACCCCTGTTAAA
ATGGGAGAGGAGATGCTGCCCTCAGAGGTCGCTAAAGAGCCCGTGGTCAC
TTTCACCGGCACGGATCCCAAGAAGATGAAGTTCCTCGTCACCTCTGCCC
TGGCATATCTTGCTCTTG back to top
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