jgi.p|Nanoce1779_2|612049, mRNA_10655 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|612049
Unique Name	mRNA_10655
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	883
Alignment location	scaffold_61:48345..49312 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	612135
Track	FilteredModels2
ProteinId	612049

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_61	supercontig	scaffold_61:48345..49312 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|612049	gene_10655	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|612049	mRNA_10655-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10655	CDS_10655	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_61:48345..49312+
coding sequence from alignment at scaffold_61:48345..49312+

mRNA sequence

>mRNA_10655 ID=mRNA_10655|Name=jgi.p|Nanoce1779_2|612049|organism=Nannochloropsis oceanica|type=mRNA|length=883bp
CTGAGGCGACCCCGTCATTTCCTCATCATCCCGCTGCCGTCGGCGCTCCA
TCTGTTGCAGCTGTTGTTGTTGTTGCTGCTGCTGTGATGGCGAACTCAAA
GAAGGCGCTCTTGATACTGTCCCTATTGCTGTTCGTGCGGCCGATGGTGG
TGGTAGTGTTGATGACACATTTCGATTATCTAACACGTGAAGAAGGGGAA
GGGTCACAAACTGCTGGTACTGGTGCTGAAGAGGACTCTGCTGGTGCTGA
AGAGGACCTGCAGTGCAGTGTGGCAACCCTAAAGACTGGTAGTACAATGG
CGGCCCCGACGGCTCCAGTGGCGGCGCGGAAGGAAGGATATAGGAAGGCC
TTGAGTCCTGCTGCATCGGCTGCAGCCAGGCATCCGCCGCCGAGGGGATT
AAGATTCTTTCCTCGGTTTGCTGCTGGTCCTCCCGCGCCAGCAACAAAAC
CAGGTCCTCGTCCTCGGTCCCTGCATCGTGATGAAGGTGGTGGTGGATGT
GATGTACGCTGGCATCCACCCCTCCTTCTCCCTCTTCATCCCCCCCGCTG
CCTTTCCCCCCCTCCTCGGAGTCCATCACCACCATGCAGTTAATGTCCAG
GCCATCCTCCGCACCCTCATCGCCCAGAAGTTGGGAATGGTGCGTCAGTA
CAAGGTGATGGTGGCTGAGGTGGTGAGTGTGCTGTTGGTGGAGGGAGTTC
ACATGATGGTGGTTGCCGTCGCCACCGGTGCTAGGGTCCGAGTCGTCCTG
CGGGAGAATATTATCCATCCTTGTTGTGTGTAGAAGGTCTGCCTAGAAAT
GGAATCTCATTATCGTGTTGCGTGTGGACTGTATCTCCTCCAACACACTC
ACCTTGTCGGTCGCATCGCTAGCCGTGGCTGTT

protein sequence of jgi.p|Nanoce1779_2|612049

>mRNA_10655-protein ID=mRNA_10655-protein|Name=jgi.p|Nanoce1779_2|612049|organism=Nannochloropsis oceanica|type=polypeptide|length=169bp
MANSKKALLILSLLLFVRPMVVVVLMTHFDYLTREEGEGSQTAGTGAEED
SAGAEEDLQCSVATLKTGSTMAAPTAPVAARKEGYRKALSPAASAAARHP
PPRGLRFFPRFAAGPPAPATKPGPRPRSLHRDEGGGGCDVRWHPPLLLPL
HPPRCLSPPPRSPSPPCS*

mRNA from alignment at scaffold_61:48345..49312+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10655 ID=mRNA_10655|Name=jgi.p|Nanoce1779_2|612049|organism=Nannochloropsis oceanica|type=mRNA|length=968bp|location=Sequence derived from alignment at scaffold_61:48345..49312+ (Nannochloropsis oceanica)
CTGAGGCGACCCCGTCATTTCCTCATCATCCCGCTGCCGTCGGCGCTCCA
TCTGTTGCAGCTGTTGTTGTTGTTGCTGCTGCTGTGATGGCGAACTCAAA
GAAGGCGCTCTTGATACTGTCCCTATTGCTGTTCGTGCGGCCGATGGTGG
TGGTAGTGTTGATGACACATTTCGATTATCTAACACGTGAAGAAGGGGAA
GGGTCACAAACTGCTGGTACTGGTGCTGAAGAGGACTCTGCTGGTGCTGA
AGAGGACCTGCAGTGCAGTGTGGCAACCCTAAAGACTGGTAGTACAATGG
CGGCCCCGACGGCTCCAGTGGCGGCGCGGAAGGAAGGATATAGGAAGGCC
TTGAGTCCTGCTGCATCGGCTGCAGCCAGGCATCCGCCGCCGAGGGGATT
AAGATTCTTTCCTCGGTTTGCTGCTGGTCCTCCCGCGCCAGCAACAAAAC
CAGGTCCTCGTCCTCGGTCCCTGCATCGTGATGAAGGTGGTGGTGGATGT
GATGTACGCTGGCATCCACCCCTCCTTCTCCCTCTTCATCCCCCCCGCTG
CCTTTCCCCCCCTCCTCGGAGTCCATCACCACCATGCAGTTAATGTCCAG
GCCATCCTCCGCACCCTCATCGCCCAGAAGTTGGGAATGGTGCGTCAGTA
CAAGGTGATGGTGGCTGAGGTGGTGAGTGTGCTGTTGGTGGAGGGAGTTC
ACATGATGGTGGTTGCCGTCGCCACCGGTGCTAGGGTCCGAGTCGTCCTG
CGGGAGAATATTATCCATCCTTGTTGTGTGTAGAAGGTCTGCCTAGAAAT
GGAATCTTCAGTACAGAGTACGGAGTGTGAGTAAGTACATGGCACATGCA
TGCTGCGCGGTACGACGCGATCGATCCCCTCTGCGAGTACCTCATTATCG
TGTTGCGTGTGGACTGTATCTCCTCCAACACACTCACCTTGTCGGTCGCA
TCGCTAGCCGTGGCTGTT

Coding sequence (CDS) from alignment at scaffold_61:48345..49312+

>mRNA_10655 ID=mRNA_10655|Name=jgi.p|Nanoce1779_2|612049|organism=Nannochloropsis oceanica|type=CDS|length=507bp|location=Sequence derived from alignment at scaffold_61:48345..49312+ (Nannochloropsis oceanica)
ATGGCGAACTCAAAGAAGGCGCTCTTGATACTGTCCCTATTGCTGTTCGT
GCGGCCGATGGTGGTGGTAGTGTTGATGACACATTTCGATTATCTAACAC
GTGAAGAAGGGGAAGGGTCACAAACTGCTGGTACTGGTGCTGAAGAGGAC
TCTGCTGGTGCTGAAGAGGACCTGCAGTGCAGTGTGGCAACCCTAAAGAC
TGGTAGTACAATGGCGGCCCCGACGGCTCCAGTGGCGGCGCGGAAGGAAG
GATATAGGAAGGCCTTGAGTCCTGCTGCATCGGCTGCAGCCAGGCATCCG
CCGCCGAGGGGATTAAGATTCTTTCCTCGGTTTGCTGCTGGTCCTCCCGC
GCCAGCAACAAAACCAGGTCCTCGTCCTCGGTCCCTGCATCGTGATGAAG
GTGGTGGTGGATGTGATGTACGCTGGCATCCACCCCTCCTTCTCCCTCTT
CATCCCCCCCGCTGCCTTTCCCCCCCTCCTCGGAGTCCATCACCACCATG
CAGTTAA

Synonyms

Publications