jgi.p|Nanoce1779_2|612048, mRNA_10654 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|612048
Unique Name	mRNA_10654
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2124
Alignment location	scaffold_61:46191..48314 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	612134
Track	FilteredModels2
ProteinId	612048

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_61	supercontig	scaffold_61:46191..48314 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|612048	gene_10654	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|612048	mRNA_10654-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10654	CDS_10654	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_61:46191..48314+
coding sequence from alignment at scaffold_61:46191..48314+

mRNA sequence

>mRNA_10654 ID=mRNA_10654|Name=jgi.p|Nanoce1779_2|612048|organism=Nannochloropsis oceanica|type=mRNA|length=2124bp
CCCCTCTTTCTCTTTTAACACCTGCATCGGAATCTCCACCAGATTTTTAA
GCAATACCCCTCGGGCCACCAACGCGTCACATTGCTTCCTCGTCTCCTCC
TCTCTCCCTGCCTGCCTCTCCCCCGCGGTCGCACCGCCCTCCTCCCAGAC
CACTATCCCTTCCCCTTCCCTTCCCCCCTTCCCTTCCCCCCCAAATACCC
CTTCCTTCAGACAGCCTTTCATGAACTTTCTCAAGAAGTGTTCCTCCCTC
GCCTCATACACCTCTTCTGCCCGCGGCCGCACAATGTACTCCTCTCGAGT
CATCGCCAGCTGCCCTCCCTCCATCTCAACCTCCTCCTCCAGGTAGCCGT
AGCAGAGGTGGAGGAAGAGCTGGAGCATGCCATTGGTCCAAGTAGCCTCT
CGAAAGATGCGAAGGGTCAAGTTCTCGTTATTCTTCGACGAGCAGATCTT
CAGCGCATACAGACACTGCTCATGCGAGGCTGCCTCCTCCTTCTTCCCCC
CCTGCAGCTGCTGCTGCTCTTCCTCCTCCTTCTCCTCCTTCTTATCGTCT
CCTGTCTCCGTAGATTCTTTCTCGTCTCCCTGCTTCTCCTTCTGTAACTC
TCCCTTGCCCTCTCTGGTCGTGTTAAGAACGTCCGCAGCATTGGTAGGAC
ACGTGTAAGGCACAGACGAAGGCACTGCTAAGGCCTTTTCGGCCTCTGCT
GCTGCTTCTCCTGGGACCCCACACGCGGCATCGGCGCCTGGACCGAAAGA
GCTTATGCAGTCTGCCCCTGTTAGCATTGCCTCGTGCTTCGCTTCCGCCG
CCTTGGACCACTTTTTAACCTTTGACTCTTCTATCTCCCCCATCGTCTTT
CTTTCCTCTTTCTTTCCTTCCTTCTCCTTCCTCCCTCCCCAGGGCACAGA
CAAGGGCACGAAAAACTTATCCCTGTAATAATCCCACATGGCCACCAACA
GCAAGTACTGCTCTTCCATTCCCATCCCAGGCATGCCCGGGTTTGCCTCC
TTCAACAGCCTCAGCCACTCGGCCTTGGTGCGGCCTGTCCTCCGCAGCCG
GTCGGCAAAGGGCAAGACTTTTTTGTAGAAGACGTAGACTGCGTCCTTGT
AGAAGCTCTTGTCCGACTGTTCCTGCCAGGGGAAGAAATTAGGCGCAGTC
AGCTGCCGTCGGCGCGCGAAGGCCTTCCGGGAGAGTGGCAGTGGCTCGTG
CTTTTGGTCTACCGGGTGGGGGGGGATGGGGGGAGGGGGAGAGGAGGAGG
AGAAGGAGTCGCTGGAGTCGAGAGAGCGAAAGCCCTCGGGTGTACTAGTA
TCCCTACTGCACGATTTTATGACCATGCTGACAGTGCGTGATATTTCCTC
ACTGCCCTCTTCCTCCCCTTCCTCCTCGCTCTTCCTCTCCGCTTCGGCTC
CCTGTCCTCTCTCCTCGCTTGACTCCGACACGAGCGGCGGGCTTGAAGCA
GTTCCAAGTGGTTGCACAATGAGTGCATCGGCTTTCCCGCTCTCCTCTTC
TCCTCTCTCGCCCACCTGCACTACCGCCTGGACCTTACTTGAGAACGATG
GTGCCGGCGTGAGCCTTACCAAATTCTTACCCTCGCCGCCATTGCCTCCT
CCACCTTCTTCTCCTTCTCCATATTCTTTTCCTCCTCCATATCCTCCCCT
TCCTTCTTCTCCTTTCCCTTCTACTGTCCCTTCTCCTATTCTGACCCCGC
TACCGCTACGCTCGCGCTTCTTGTTGGTGGTAGGGCTCGTGCTTGTCATG
CCTACCAATGAGGCTGTCGAAACAGGGATAGAAGAAGAGGAGGGCATAGC
TTCTCGCTGCTGTTGTTGAGATTCCTCCTCCTCCTGTTGCTGCTGCTGTT
GTTGCTGTTGTTGTTGCTGCTGCTGCTGCTGCGACGGGAAGTATTCGTAC
TCTTCCTCCTCCTCGGCGTGCGTTCGTCTTGCCAGTGAGGAGAGGGCCTG
GCCACCAAGGACAGCAGCCACTCCGTCCTGCTCCTCTCCCACGACATTCC
TCTTCCCTCCTGTAATATGTGCTGGTGCTGCCTCACGCATACGCACAAAC
ACAGGCTCTTTCTGCCCTCCCATCTTCCTCTTTCTCATCTTCTTTTTCCT
CTGCTGCTGCTGCTGCTGCTGCTG

protein sequence of jgi.p|Nanoce1779_2|612048

>mRNA_10654-protein ID=mRNA_10654-protein|Name=jgi.p|Nanoce1779_2|612048|organism=Nannochloropsis oceanica|type=polypeptide|length=198bp
MGGGGEEEEKESLESRERKPSGVLVSLLHDFMTMLTVRDISSLPSSSPSS
SLFLSASAPCPLSSLDSDTSGGLEAVPSGCTMSASAFPLSSSPLSPTCTT
AWTLLENDGAGVSLTKFLPSPPLPPPPSSPSPYSFPPPYPPLPSSPFPST
VPSPILTPLPLRSRFLLVVGLVLVMPTNEAVETGIEEEEGIASRCCC*

mRNA from alignment at scaffold_61:46191..48314+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10654 ID=mRNA_10654|Name=jgi.p|Nanoce1779_2|612048|organism=Nannochloropsis oceanica|type=mRNA|length=2124bp|location=Sequence derived from alignment at scaffold_61:46191..48314+ (Nannochloropsis oceanica)
CCCCTCTTTCTCTTTTAACACCTGCATCGGAATCTCCACCAGATTTTTAA
GCAATACCCCTCGGGCCACCAACGCGTCACATTGCTTCCTCGTCTCCTCC
TCTCTCCCTGCCTGCCTCTCCCCCGCGGTCGCACCGCCCTCCTCCCAGAC
CACTATCCCTTCCCCTTCCCTTCCCCCCTTCCCTTCCCCCCCAAATACCC
CTTCCTTCAGACAGCCTTTCATGAACTTTCTCAAGAAGTGTTCCTCCCTC
GCCTCATACACCTCTTCTGCCCGCGGCCGCACAATGTACTCCTCTCGAGT
CATCGCCAGCTGCCCTCCCTCCATCTCAACCTCCTCCTCCAGGTAGCCGT
AGCAGAGGTGGAGGAAGAGCTGGAGCATGCCATTGGTCCAAGTAGCCTCT
CGAAAGATGCGAAGGGTCAAGTTCTCGTTATTCTTCGACGAGCAGATCTT
CAGCGCATACAGACACTGCTCATGCGAGGCTGCCTCCTCCTTCTTCCCCC
CCTGCAGCTGCTGCTGCTCTTCCTCCTCCTTCTCCTCCTTCTTATCGTCT
CCTGTCTCCGTAGATTCTTTCTCGTCTCCCTGCTTCTCCTTCTGTAACTC
TCCCTTGCCCTCTCTGGTCGTGTTAAGAACGTCCGCAGCATTGGTAGGAC
ACGTGTAAGGCACAGACGAAGGCACTGCTAAGGCCTTTTCGGCCTCTGCT
GCTGCTTCTCCTGGGACCCCACACGCGGCATCGGCGCCTGGACCGAAAGA
GCTTATGCAGTCTGCCCCTGTTAGCATTGCCTCGTGCTTCGCTTCCGCCG
CCTTGGACCACTTTTTAACCTTTGACTCTTCTATCTCCCCCATCGTCTTT
CTTTCCTCTTTCTTTCCTTCCTTCTCCTTCCTCCCTCCCCAGGGCACAGA
CAAGGGCACGAAAAACTTATCCCTGTAATAATCCCACATGGCCACCAACA
GCAAGTACTGCTCTTCCATTCCCATCCCAGGCATGCCCGGGTTTGCCTCC
TTCAACAGCCTCAGCCACTCGGCCTTGGTGCGGCCTGTCCTCCGCAGCCG
GTCGGCAAAGGGCAAGACTTTTTTGTAGAAGACGTAGACTGCGTCCTTGT
AGAAGCTCTTGTCCGACTGTTCCTGCCAGGGGAAGAAATTAGGCGCAGTC
AGCTGCCGTCGGCGCGCGAAGGCCTTCCGGGAGAGTGGCAGTGGCTCGTG
CTTTTGGTCTACCGGGTGGGGGGGGATGGGGGGAGGGGGAGAGGAGGAGG
AGAAGGAGTCGCTGGAGTCGAGAGAGCGAAAGCCCTCGGGTGTACTAGTA
TCCCTACTGCACGATTTTATGACCATGCTGACAGTGCGTGATATTTCCTC
ACTGCCCTCTTCCTCCCCTTCCTCCTCGCTCTTCCTCTCCGCTTCGGCTC
CCTGTCCTCTCTCCTCGCTTGACTCCGACACGAGCGGCGGGCTTGAAGCA
GTTCCAAGTGGTTGCACAATGAGTGCATCGGCTTTCCCGCTCTCCTCTTC
TCCTCTCTCGCCCACCTGCACTACCGCCTGGACCTTACTTGAGAACGATG
GTGCCGGCGTGAGCCTTACCAAATTCTTACCCTCGCCGCCATTGCCTCCT
CCACCTTCTTCTCCTTCTCCATATTCTTTTCCTCCTCCATATCCTCCCCT
TCCTTCTTCTCCTTTCCCTTCTACTGTCCCTTCTCCTATTCTGACCCCGC
TACCGCTACGCTCGCGCTTCTTGTTGGTGGTAGGGCTCGTGCTTGTCATG
CCTACCAATGAGGCTGTCGAAACAGGGATAGAAGAAGAGGAGGGCATAGC
TTCTCGCTGCTGTTGTTGAGATTCCTCCTCCTCCTGTTGCTGCTGCTGTT
GTTGCTGTTGTTGTTGCTGCTGCTGCTGCTGCGACGGGAAGTATTCGTAC
TCTTCCTCCTCCTCGGCGTGCGTTCGTCTTGCCAGTGAGGAGAGGGCCTG
GCCACCAAGGACAGCAGCCACTCCGTCCTGCTCCTCTCCCACGACATTCC
TCTTCCCTCCTGTAATATGTGCTGGTGCTGCCTCACGCATACGCACAAAC
ACAGGCTCTTTCTGCCCTCCCATCTTCCTCTTTCTCATCTTCTTTTTCCT
CTGCTGCTGCTGCTGCTGCTGCTG

Coding sequence (CDS) from alignment at scaffold_61:46191..48314+

>mRNA_10654 ID=mRNA_10654|Name=jgi.p|Nanoce1779_2|612048|organism=Nannochloropsis oceanica|type=CDS|length=594bp|location=Sequence derived from alignment at scaffold_61:46191..48314+ (Nannochloropsis oceanica)
ATGGGGGGAGGGGGAGAGGAGGAGGAGAAGGAGTCGCTGGAGTCGAGAGA
GCGAAAGCCCTCGGGTGTACTAGTATCCCTACTGCACGATTTTATGACCA
TGCTGACAGTGCGTGATATTTCCTCACTGCCCTCTTCCTCCCCTTCCTCC
TCGCTCTTCCTCTCCGCTTCGGCTCCCTGTCCTCTCTCCTCGCTTGACTC
CGACACGAGCGGCGGGCTTGAAGCAGTTCCAAGTGGTTGCACAATGAGTG
CATCGGCTTTCCCGCTCTCCTCTTCTCCTCTCTCGCCCACCTGCACTACC
GCCTGGACCTTACTTGAGAACGATGGTGCCGGCGTGAGCCTTACCAAATT
CTTACCCTCGCCGCCATTGCCTCCTCCACCTTCTTCTCCTTCTCCATATT
CTTTTCCTCCTCCATATCCTCCCCTTCCTTCTTCTCCTTTCCCTTCTACT
GTCCCTTCTCCTATTCTGACCCCGCTACCGCTACGCTCGCGCTTCTTGTT
GGTGGTAGGGCTCGTGCTTGTCATGCCTACCAATGAGGCTGTCGAAACAG
GGATAGAAGAAGAGGAGGGCATAGCTTCTCGCTGCTGTTGTTGA

Synonyms

Publications