jgi.p|Nanoce1779_2|612038, mRNA_10651 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|612038
Unique NamemRNA_10651
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1810
Alignment locationscaffold_61:40218..42228 -

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Properties
Property NameValue
TranscriptId612124
TrackFilteredModels2
ProteinId612038
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_61supercontigscaffold_61:40218..42228 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612038gene_10651Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612038mRNA_10651-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10651CDS_10651Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10651 ID=mRNA_10651|Name=jgi.p|Nanoce1779_2|612038|organism=Nannochloropsis oceanica|type=mRNA|length=1810bp
TTTCTTGAACTGTGTGTCTTTTTTTATCATTTTCGTTGACTTTTTCTGTG
CCATTTCATCTCCATCCACTCCTTTGTGCTTGCTTTTCATTTTCTTTTCC
CTGCGTTCTACCTATCGTTCAATCCCACTCGACTCTTCTTCTTTCCTTCT
CGCTTGTTCTCTCTCCCTGCCTCCTGACTTTCTTGCCCTCACCTTCTATT
TATTCCCTTGTCTTCGAGCCCATTCCATGTTATTCTTTTCCTTTTCTCCT
CTAATTCATCTAGCCATGGCCCCCTGGCTCTTCCCAATTCTCTTCTTCCC
TCTCTTGCTCTTAATTCCTCTCCACCCGCAGGATTTCTTCTTTCTTCGCT
TTTTAGCATCTAGCTTTATTGCTCGATGCTCTTTTACCAATCCACGCTCG
CGATGGCGGACTCCTGGATCCCTTGTTAAATGTTGTGTATTTTTTTTATT
TCACTCTTCACCTGGACGATACCCCGGAGTATCTCAATCCCATGGGAAGA
GCAATCAGGTCTTTTGCATTCCAAAAAATTTCGCTGCCTGTGCGGTTCTG
ATACATATATGCACCCTCTCGACTATTATGAATTTTCGATACGTTCCGAT
CTGTCCCATCAATCCCGTCTATTTTCACGCCCAAAATAATTCCAGGGTGG
GGAACGCATGTGATATGTTTGGAAGCGAGGACTAGTCGAGAGAACGAAGA
GAGCTGAGCATTGATGCGGAGGGGTGAAGCGTAAGTGGTTGCAGTGTGCA
TACGCTTGTCAAAACACCAGAACAAGGCGAGATGGAAGACATAACTCGGC
GTTGTGATTCCGAGTAATTTCGAGCCCCCCTATGCGGGTAGACGGCTGCT
TCCTTTCAAGTACTGTATATAAGCCCGAGTACAAGGTCTTTTTGTGCCCA
AAAGAGGAAAGATGGCGTGAAGGGACGCGCTTTTTGTGACAAAAGATGGT
TTGGGGAGCACAAGCGGCCTTGGCGGTAGCGGCGTCAGGAAAACGGTCAG
AGATGGTGTTGACGCTTCTCTCACCGTCGCCCTCTACACGCACAGTGGCG
CCTCCACCGCCGCACATGAGAAGACGGCCAGAGGACAACTACAGCAGTGG
CCACATGCCAAGTAAGAGTAACAGCAGCCGGGGCGCGTACGGTGGTGGAA
TGCCGCAAGCCGGGCCCGGCAGACCGTCCAACTACTATTCAATGCCAGAG
GACCGAGTCCGTGAGTCAAGCCGGAATATGTTTGAGGATGAGAATAACAG
GCGCATCGCAGACTTGGCCGGGCAAGTCTCCATGCTCAAGGAGGTACGTC
ATGAACTCAAGGAGAGAGGAAGTGCAGGAGTAGGGATGGCATGGTGCTGG
GCAAATGTTTAGCTAGTCAAGGTTGGTAGCTACTTGCAAGTGATTGAGAT
GTGTGATGAGCAAGAAGGGGGCGCAGGTGGGAAGCAATCTGGGCGGGATG
CTGATGGAACGGCGCGTGGATGAAAGGAGAAATTTTGTAAGCAATGAAAA
AGCTTACAGGAGCTTGAGTGTAGTGAGGCCTTCAGCGGAGAGCGGTGTGT
CCAAAATGCAGATTGTATACATGAAAGAGAGAAAAAGGAGTGGTAAAATG
TATCGTCGAAGTGATACCAAGGCTTTTTTTAATGGGATGCAACGAAGTGT
CTACAAACACGCTGAAGTCGTCTAAATTATTTTCTATCCCTGATTTTCTC
CACCATCCTCTACCTCATATCCCACGCCGCAGCTGACAATTGACATAGGC
ACGGAAGTCCGCTCCCAAAATACTCTCCTCGATGACATGGTGAGCACATT
TTTGGTTAGG
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protein sequence of jgi.p|Nanoce1779_2|612038

>mRNA_10651-protein ID=mRNA_10651-protein|Name=jgi.p|Nanoce1779_2|612038|organism=Nannochloropsis oceanica|type=polypeptide|length=153bp
MLFFSFSPLIHLAMAPWLFPILFFPLLLLIPLHPQDFFFLRFLASSFIAR
CSFTNPRSRWRTPGSLVKCCVFFLFHSSPGRYPGVSQSHGKSNQVFCIPK
NFAACAVLIHICTLSTIMNFRYVPICPINPVYFHAQNNSRVGNACDMFGS
ED*
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mRNA from alignment at scaffold_61:40218..42228-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10651 ID=mRNA_10651|Name=jgi.p|Nanoce1779_2|612038|organism=Nannochloropsis oceanica|type=mRNA|length=2011bp|location=Sequence derived from alignment at scaffold_61:40218..42228- (Nannochloropsis oceanica)
TTTCTTGAACTGTGTGTCTTTTTTTATCATTTTCGTTGACTTTTTCTGTG
CCATTTCATCTCCATCCACTCCTTTGTGCTTGCTTTTCATTTTCTTTTCC
CTGCGTTCTACCTATCGTTCAATCCCACTCGACTCTTCTTCTTTCCTTCT
CGCTTGTTCTCTCTCCCTGCCTCCTGACTTTCTTGCCCTCACCTTCTATT
TATTCCCTTGTCTTCGAGCCCATTCCATGTTATTCTTTTCCTTTTCTCCT
CTAATTCATCTAGCCATGGCCCCCTGGCTCTTCCCAATTCTCTTCTTCCC
TCTCTTGCTCTTAATTCCTCTCCACCCGCAGGATTTCTTCTTTCTTCGCT
TTTTAGCATCTAGCTTTATTGCTCGATGCTCTTTTACCAATCCACGCTCG
CGATGGCGGACTCCTGGATCCCTTGTTAAATGTTGTGTATTTTTTTTATT
TCACTCTTCACCTGGACGATACCCCGGAGTATCTCAATCCCATGGGAAGA
GCAATCAGGTCTTTTGCATTCCAAAAAATTTCGCTGCCTGTGCGGTTCTG
ATACATATATGCACCCTCTCGACTATTATGAATTTTCGATACGTTCCGAT
CTGTCCCATCAATCCCGTCTATTTTCACGCCCAAAATAATTCCAGGGTGG
GGAACGCATGTGATATGTTTGGAAGCGAGGACTAGTCGAGAGAACGAAGA
GAGCTGAGCATTGATGCGGAGGGGTGAAGCGTAAGTGGTTGCAGTGTGCA
TACGCTTGTCAAAACACCAGAACAAGGCGAGATGGAAGACATAACTCGGC
GTTGTGATTCCGAGTAATTTCGAGCCCCCCTATGCGGGTAGACGGCTGCT
TCCTTTCAAGTACTGTATATAAGCCCGAGTACAAGGTCTTTTTGTGCCCA
AAAGAGGAAAGATGGCGTGAAGGGACGCGCTTTTTGTGACAAAAGATGGT
TTGGGGAGCACAAGCGGCCTTGGCGGTAGCGGCGTCAGGAAAACGGTCAG
AGATGGTGTTGACGCTTCTCTCACCGTCGCCCTCTACACGCACAGTGGCG
CCTCCACCGCCGCACATGAGAAGACGGCCAGAGGACAACTACAGCAGTGG
CCACATGCCAAGTAAGAGTAACAGCAGCCGGGGCGCGTACGGTGGTGGAA
TGCCGCAAGCCGGGCCCGGCAGACCGGTACGTGGGGAGATAGATGCCTGC
CCGTGTAGGGCTGGCTATAGGCACTGGCACGTGTGGTTGGAGGGGATTGG
AAACTATTGGCATCGGCTCCCAGTGTGTCGTGTGTGCTTCTTTTCTCATG
CATACACGGCACGGCAGCATCATCACGCTTTTACTCTGTCTGCTCACGCA
TGCCCCCTTCCCATTCCACCCCTCCAGTCCAACTACTATTCAATGCCAGA
GGACCGAGTCCGTGAGTCAAGCCGGAATATGTTTGAGGATGAGAATAACA
GGCGCATCGCAGACTTGGCCGGGCAAGTCTCCATGCTCAAGGAGGTACGT
CATGAACTCAAGGAGAGAGGAAGTGCAGGAGTAGGGATGGCATGGTGCTG
GGCAAATGTTTAGCTAGTCAAGGTTGGTAGCTACTTGCAAGTGATTGAGA
TGTGTGATGAGCAAGAAGGGGGCGCAGGTGGGAAGCAATCTGGGCGGGAT
GCTGATGGAACGGCGCGTGGATGAAAGGAGAAATTTTGTAAGCAATGAAA
AAGCTTACAGGAGCTTGAGTGTAGTGAGGCCTTCAGCGGAGAGCGGTGTG
TCCAAAATGCAGATTGTATACATGAAAGAGAGAAAAAGGAGTGGTAAAAT
GTATCGTCGAAGTGATACCAAGGCTTTTTTTAATGGGATGCAACGAAGTG
TCTACAAACACGCTGAAGTCGTCTAAATTATTTTCTATCCCTGATTTTCT
CCACCATCCTCTACCTCATATCCCACGCCGCAGCTGACAATTGACATAGG
CACGGAAGTCCGCTCCCAAAATACTCTCCTCGATGACATGGTGAGCACAT
TTTTGGTTAGG
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Coding sequence (CDS) from alignment at scaffold_61:40218..42228-

>mRNA_10651 ID=mRNA_10651|Name=jgi.p|Nanoce1779_2|612038|organism=Nannochloropsis oceanica|type=CDS|length=459bp|location=Sequence derived from alignment at scaffold_61:40218..42228- (Nannochloropsis oceanica)
ATGTTATTCTTTTCCTTTTCTCCTCTAATTCATCTAGCCATGGCCCCCTG
GCTCTTCCCAATTCTCTTCTTCCCTCTCTTGCTCTTAATTCCTCTCCACC
CGCAGGATTTCTTCTTTCTTCGCTTTTTAGCATCTAGCTTTATTGCTCGA
TGCTCTTTTACCAATCCACGCTCGCGATGGCGGACTCCTGGATCCCTTGT
TAAATGTTGTGTATTTTTTTTATTTCACTCTTCACCTGGACGATACCCCG
GAGTATCTCAATCCCATGGGAAGAGCAATCAGGTCTTTTGCATTCCAAAA
AATTTCGCTGCCTGTGCGGTTCTGATACATATATGCACCCTCTCGACTAT
TATGAATTTTCGATACGTTCCGATCTGTCCCATCAATCCCGTCTATTTTC
ACGCCCAAAATAATTCCAGGGTGGGGAACGCATGTGATATGTTTGGAAGC
GAGGACTAG
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Synonyms
Publications