jgi.p|Nanoce1779_2|612034, mRNA_10650 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|612034
Unique NamemRNA_10650
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length894
Alignment locationscaffold_61:39460..41187 -

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Properties
Property NameValue
TranscriptId612120
TrackFilteredModels2
ProteinId612034
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_61supercontigscaffold_61:39460..41187 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612034gene_10650Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612034mRNA_10650-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10650CDS_10650Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10650 ID=mRNA_10650|Name=jgi.p|Nanoce1779_2|612034|organism=Nannochloropsis oceanica|type=mRNA|length=894bp
ACAGTGGCGCCTCCACCGCCGCACATGAGAAGACGGCCAGAGGACAACTA
CAGCAGTGGCCACATGCCAAGTAAGAGTAACAGCAGCCGGGGCGCGTACG
GTGGTGGAATGCCGCAAGCCGGGCCCGGCAGACCGTCCAACTACTATTCA
ATGCCAGAGGACCGAGTCCGTGAGTCAAGCCGGAATATGTTTGAGGATGA
GAATAACAGGCGCATCGCAGACTTGGCCGGGCAAGTCTCCATGCTCAAGG
AGCTGACAATTGACATAGGCACGGAAGTCCGCTCCCAAAATACTCTCCTC
GATGACATGGGCAACGGGTTTTCACGCACAGATGGGTTGATGGGCTCCAC
CATGCGGCGGCTGAACAAGATGCTCACCACCTCCTCAAGCCGGCACATGC
TCTGGCTTGTGGTGTTTATTGTCTTTGTCTTCATCTTCGTCTACTACATC
ATTAGGCACAAGGGCTGAAGGGAAGGCAGGAGGAAAGGAGGGATGGAGAA
GGAATTGAGGGAAGGAAAATGATGTGTCAGGAAAGGAATGAGATGGATCG
GACAAAAGATTACGGTGGAAATGGCACAATTTAAAATTTGTTTATACGCA
CGTGCGAATGAGATAGGGAAACTGGAAATGAGAAGACGTTGGCGATGATG
TGGAGAAAAAGAAATACCACCAAAATAGTTTTTAATTTGTGGGAGTTACC
ATCGTCTCACTTTTATTATATAATTGAGGGTGTTTCGTTCGTATCTTACC
TTTTTTTTGCCATGTCCCATTTTATCTTCGTTTGTGGTTTACGTGAGTCG
TTCCGCCTGTCATTCGATATTGCGTGTGGATTGGCTCCTCTTTCCTCCGA
TCTACGTCCACACCCCACCCATAGATGACGTTCTTTGACGATTG
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protein sequence of jgi.p|Nanoce1779_2|612034

>mRNA_10650-protein ID=mRNA_10650-protein|Name=jgi.p|Nanoce1779_2|612034|organism=Nannochloropsis oceanica|type=polypeptide|length=148bp
MRRRPEDNYSSGHMPSKSNSSRGAYGGGMPQAGPGRPSNYYSMPEDRVRE
SSRNMFEDENNRRIADLAGQVSMLKELTIDIGTEVRSQNTLLDDMGNGFS
RTDGLMGSTMRRLNKMLTTSSSRHMLWLVVFIVFVFIFVYYIIRHKG*
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mRNA from alignment at scaffold_61:39460..41187-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10650 ID=mRNA_10650|Name=jgi.p|Nanoce1779_2|612034|organism=Nannochloropsis oceanica|type=mRNA|length=1728bp|location=Sequence derived from alignment at scaffold_61:39460..41187- (Nannochloropsis oceanica)
ACAGTGGCGCCTCCACCGCCGCACATGAGAAGACGGCCAGAGGACAACTA
CAGCAGTGGCCACATGCCAAGTAAGAGTAACAGCAGCCGGGGCGCGTACG
GTGGTGGAATGCCGCAAGCCGGGCCCGGCAGACCGGTACGTGGGGAGATA
GATGCCTGCCCGTGTAGGGCTGGCTATAGGCACTGGCACGTGTGGTTGGA
GGGGATTGGAAACTATTGGCATCGGCTCCCAGTGTGTCGTGTGTGCTTCT
TTTCTCATGCATACACGGCACGGCAGCATCATCACGCTTTTACTCTGTCT
GCTCACGCATGCCCCCTTCCCATTCCACCCCTCCAGTCCAACTACTATTC
AATGCCAGAGGACCGAGTCCGTGAGTCAAGCCGGAATATGTTTGAGGATG
AGAATAACAGGCGCATCGCAGACTTGGCCGGGCAAGTCTCCATGCTCAAG
GAGGTACGTCATGAACTCAAGGAGAGAGGAAGTGCAGGAGTAGGGATGGC
ATGGTGCTGGGCAAATGTTTAGCTAGTCAAGGTTGGTAGCTACTTGCAAG
TGATTGAGATGTGTGATGAGCAAGAAGGGGGCGCAGGTGGGAAGCAATCT
GGGCGGGATGCTGATGGAACGGCGCGTGGATGAAAGGAGAAATTTTGTAA
GCAATGAAAAAGCTTACAGGAGCTTGAGTGTAGTGAGGCCTTCAGCGGAG
AGCGGTGTGTCCAAAATGCAGATTGTATACATGAAAGAGAGAAAAAGGAG
TGGTAAAATGTATCGTCGAAGTGATACCAAGGCTTTTTTTAATGGGATGC
AACGAAGTGTCTACAAACACGCTGAAGTCGTCTAAATTATTTTCTATCCC
TGATTTTCTCCACCATCCTCTACCTCATATCCCACGCCGCAGCTGACAAT
TGACATAGGCACGGAAGTCCGCTCCCAAAATACTCTCCTCGATGACATGG
TGAGCACATTTTTGGTTAGGTAGACAAGGAAAGAAGAGGAGGGAGAATGG
GGGAATATTCAGGTTTAAAAGGAGAAAGGACCGTGTCTGTCGCACACTGG
CGAAATTCCGTTGACCAAAACTCTGTGGAATCGATTAATTGCTATCCGCG
ACCGTGACACTCCACCCTTCTCTCCCATCGTATCAACGCGCAGGGCAACG
GGTTTTCACGCACAGATGGGTTGATGGGCTCCACCATGCGGCGGCTGAAC
AAGATGCTCACCACCTCCTCAAGCCGGCACATGCTCTGGCTTGTGGTGTT
TATTGTCTTTGTCTTCATCTTCGTCTACTACATCATTAGGCACAAGGGCT
GAAGGGAAGGCAGGAGGAAAGGAGGGATGGAGAAGGAATTGAGGGAAGGA
AAATGATGTGTCAGGAAAGGAATGAGATGGATCGGACAAAAGATTACGGT
GGAAATGGCACAATTTAAAATTTGTTTATACGCACGTGCGAATGAGATAG
GGAAACTGGAAATGAGAAGACGTTGGCGATGATGTGGAGAAAAAGAAATA
CCACCAAAATAGTTTTTAATTTGTGGGAGTTACCATCGTCTCACTTTTAT
TATATAATTGAGGGTGTTTCGTTCGTATCTTACCTTTTTTTTGCCATGTC
CCATTTTATCTTCGTTTGTGGTTTACGTGAGTCGTTCCGCCTGTCATTCG
ATATTGCGTGTGGATTGGCTCCTCTTTCCTCCGATCTACGTCCACACCCC
ACCCATAGATGACGTTCTTTGACGATTG
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Coding sequence (CDS) from alignment at scaffold_61:39460..41187-

>mRNA_10650 ID=mRNA_10650|Name=jgi.p|Nanoce1779_2|612034|organism=Nannochloropsis oceanica|type=CDS|length=1776bp|location=Sequence derived from alignment at scaffold_61:39460..41187- (Nannochloropsis oceanica)
GGCAACGGGTTTTCACGCACAGATGGGTTGATGGGCTCCACCATGCGGCG
GCTGAACAAGATGCTCACCACCTCCTCAAGCCGGCACATGCTCTGGCTTG
TGGTGTTTATTGTCTTTGTCTTCATCTTCGTCTACTACATCATTAGGCAC
AAGGGCTGACTGACAATTGACATAGGCACGGAAGTCCGCTCCCAAAATAC
TCTCCTCGATGACATGTCCAACTACTATTCAATGCCAGAGGACCGAGTCC
GTGAGTCAAGCCGGAATATGTTTGAGGATGAGAATAACAGGCGCATCGCA
GACTTGGCCGGGCAAGTCTCCATGCTCAAGGAGATGAGAAGACGGCCAGA
GGACAACTACAGCAGTGGCCACATGCCAAGTAAGAGTAACAGCAGCCGGG
GCGCGTACGGTGGTGGAATGCCGCAAGCCGGGCCCGGCAGACCGGGCAAC
GGGTTTTCACGCACAGATGGGTTGATGGGCTCCACCATGCGGCGGCTGAA
CAAGATGCTCACCACCTCCTCAAGCCGGCACATGCTCTGGCTTGTGGTGT
TTATTGTCTTTGTCTTCATCTTCGTCTACTACATCATTAGGCACAAGGGC
TGACTGACAATTGACATAGGCACGGAAGTCCGCTCCCAAAATACTCTCCT
CGATGACATGTCCAACTACTATTCAATGCCAGAGGACCGAGTCCGTGAGT
CAAGCCGGAATATGTTTGAGGATGAGAATAACAGGCGCATCGCAGACTTG
GCCGGGCAAGTCTCCATGCTCAAGGAGATGAGAAGACGGCCAGAGGACAA
CTACAGCAGTGGCCACATGCCAAGTAAGAGTAACAGCAGCCGGGGCGCGT
ACGGTGGTGGAATGCCGCAAGCCGGGCCCGGCAGACCGGGCAACGGGTTT
TCACGCACAGATGGGTTGATGGGCTCCACCATGCGGCGGCTGAACAAGAT
GCTCACCACCTCCTCAAGCCGGCACATGCTCTGGCTTGTGGTGTTTATTG
TCTTTGTCTTCATCTTCGTCTACTACATCATTAGGCACAAGGGCTGACTG
ACAATTGACATAGGCACGGAAGTCCGCTCCCAAAATACTCTCCTCGATGA
CATGTCCAACTACTATTCAATGCCAGAGGACCGAGTCCGTGAGTCAAGCC
GGAATATGTTTGAGGATGAGAATAACAGGCGCATCGCAGACTTGGCCGGG
CAAGTCTCCATGCTCAAGGAGATGAGAAGACGGCCAGAGGACAACTACAG
CAGTGGCCACATGCCAAGTAAGAGTAACAGCAGCCGGGGCGCGTACGGTG
GTGGAATGCCGCAAGCCGGGCCCGGCAGACCGGGCAACGGGTTTTCACGC
ACAGATGGGTTGATGGGCTCCACCATGCGGCGGCTGAACAAGATGCTCAC
CACCTCCTCAAGCCGGCACATGCTCTGGCTTGTGGTGTTTATTGTCTTTG
TCTTCATCTTCGTCTACTACATCATTAGGCACAAGGGCTGACTGACAATT
GACATAGGCACGGAAGTCCGCTCCCAAAATACTCTCCTCGATGACATGTC
CAACTACTATTCAATGCCAGAGGACCGAGTCCGTGAGTCAAGCCGGAATA
TGTTTGAGGATGAGAATAACAGGCGCATCGCAGACTTGGCCGGGCAAGTC
TCCATGCTCAAGGAGATGAGAAGACGGCCAGAGGACAACTACAGCAGTGG
CCACATGCCAAGTAAGAGTAACAGCAGCCGGGGCGCGTACGGTGGTGGAA
TGCCGCAAGCCGGGCCCGGCAGACCG
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Synonyms
Publications