jgi.p|Nanoce1779_2|569941, mRNA_10649 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|569941
Unique Name	mRNA_10649
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1269
Alignment location	scaffold_61:37111..38379 +

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Properties


Property Name	Value
TranscriptId	570027
Track	FilteredModels2
ProteinId	569941

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_61	supercontig	scaffold_61:37111..38379 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|569941	gene_10649	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|569941	mRNA_10649-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10649	CDS_10649	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_61:37111..38379+
coding sequence from alignment at scaffold_61:37111..38379+

mRNA sequence

>mRNA_10649 ID=mRNA_10649|Name=jgi.p|Nanoce1779_2|569941|organism=Nannochloropsis oceanica|type=mRNA|length=1269bp
ATGCCTCGCAATTTCTACACGGGAAATTTTACTGCTGAAGGGCATATGTA
TAGTATGGATCGTGTATTGAGATACATCGGAGAGGGACAGCAAGTGACGT
CGGATATGCAATCCTTGAAGGATTTAGAATCGCAACATAATCTGGCGATA
ATTCAACTAACAGGCACAACAATCGTATCCATGGCATTTCAGTACCACAT
TCCTCATTTTGTGGAGGCATTGCTGCCGCTAATCAACACATTGAGTCAAA
AGAAAAGGTTTGGTGTTTCACCCCCGTATCGTGTCATGATAGGCACATAT
CAATTCTGGCAAGGAGATACAGGCTTTCAACTCAATCTAACCGATATTGT
TCTGTCGGCTATAGAGGAGAACGAGCTTGCAAGCTCGTATGAAAAAGATT
GGCTTCGCCTCCTTGGTTGGAAAGGTGATTTGCCAATGGAAACAGAGTGG
TTTACGAAGGAACTTGGAATTCATAACTGGATGATCGATGACCGACTCTC
CCATTTACAAAACACTACTGACTATATAGTTTGCTTCGATCAACTGACTA
TTCCAAGTTATAGTTGGTACGGGACACCATTTAGCTCGATACTGTTCAGG
CGTTATTTGTACGATTTCCTAGCAATGCAACCTATCGCGTACGGAGAGTC
AAATGATGCCGCTCTATCCAATTTACAGAATATAACGAAGGATTTCAAAT
TATTACAACCTTGCGAACGGACTTCCGCAATCGAATCGCAGCCCGGAGAA
ATCGTCATGGTGCAAAGAAAATCTACCCGGGGCATCGCAAACTTTGACGA
AGTGGTGAATTTCGTCTTCGATGTCACGGGGATTAGACCTAGAGTCGTTA
ATGATTTTGAGGGCACAGTATTTAATCAGGCTTCTCAGGTGTTGAACAGC
CGGATTCTCATTTCACCCCATGGTGCTGGATTAACAAACATCATTTTCAT
GCCGGTGGGAAGTGCGGTCATTGAAATTTTGCCCCTCGGATACGATGTCT
CATATTACTTCAAATGGCTCACGACTTCCTCGAGCCTCCGTCACCACCAG
TACATAAACCAAAATAACGATGACACAGTCATGACTGACTCATGTATAAC
TCTCTTTAATGGCTTCAACAAAAGCATTCAGGCCTGCGGTGAAGATGGAG
GATGCTTTTACTGCATGAAATCAGCCAAAACTAGAATCGATTTGCAACTT
TTTAGACCTTTACTGGAAGCTGCAATATCTCAAACAGCTCATTTACATCG
CGTGCCATGTTCGGCATAA

protein sequence of jgi.p|Nanoce1779_2|569941

>mRNA_10649-protein ID=mRNA_10649-protein|Name=jgi.p|Nanoce1779_2|569941|organism=Nannochloropsis oceanica|type=polypeptide|length=423bp
MPRNFYTGNFTAEGHMYSMDRVLRYIGEGQQVTSDMQSLKDLESQHNLAI
IQLTGTTIVSMAFQYHIPHFVEALLPLINTLSQKKRFGVSPPYRVMIGTY
QFWQGDTGFQLNLTDIVLSAIEENELASSYEKDWLRLLGWKGDLPMETEW
FTKELGIHNWMIDDRLSHLQNTTDYIVCFDQLTIPSYSWYGTPFSSILFR
RYLYDFLAMQPIAYGESNDAALSNLQNITKDFKLLQPCERTSAIESQPGE
IVMVQRKSTRGIANFDEVVNFVFDVTGIRPRVVNDFEGTVFNQASQVLNS
RILISPHGAGLTNIIFMPVGSAVIEILPLGYDVSYYFKWLTTSSSLRHHQ
YINQNNDDTVMTDSCITLFNGFNKSIQACGEDGGCFYCMKSAKTRIDLQL
FRPLLEAAISQTAHLHRVPCSA*

mRNA from alignment at scaffold_61:37111..38379+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10649 ID=mRNA_10649|Name=jgi.p|Nanoce1779_2|569941|organism=Nannochloropsis oceanica|type=mRNA|length=1269bp|location=Sequence derived from alignment at scaffold_61:37111..38379+ (Nannochloropsis oceanica)
ATGCCTCGCAATTTCTACACGGGAAATTTTACTGCTGAAGGGCATATGTA
TAGTATGGATCGTGTATTGAGATACATCGGAGAGGGACAGCAAGTGACGT
CGGATATGCAATCCTTGAAGGATTTAGAATCGCAACATAATCTGGCGATA
ATTCAACTAACAGGCACAACAATCGTATCCATGGCATTTCAGTACCACAT
TCCTCATTTTGTGGAGGCATTGCTGCCGCTAATCAACACATTGAGTCAAA
AGAAAAGGTTTGGTGTTTCACCCCCGTATCGTGTCATGATAGGCACATAT
CAATTCTGGCAAGGAGATACAGGCTTTCAACTCAATCTAACCGATATTGT
TCTGTCGGCTATAGAGGAGAACGAGCTTGCAAGCTCGTATGAAAAAGATT
GGCTTCGCCTCCTTGGTTGGAAAGGTGATTTGCCAATGGAAACAGAGTGG
TTTACGAAGGAACTTGGAATTCATAACTGGATGATCGATGACCGACTCTC
CCATTTACAAAACACTACTGACTATATAGTTTGCTTCGATCAACTGACTA
TTCCAAGTTATAGTTGGTACGGGACACCATTTAGCTCGATACTGTTCAGG
CGTTATTTGTACGATTTCCTAGCAATGCAACCTATCGCGTACGGAGAGTC
AAATGATGCCGCTCTATCCAATTTACAGAATATAACGAAGGATTTCAAAT
TATTACAACCTTGCGAACGGACTTCCGCAATCGAATCGCAGCCCGGAGAA
ATCGTCATGGTGCAAAGAAAATCTACCCGGGGCATCGCAAACTTTGACGA
AGTGGTGAATTTCGTCTTCGATGTCACGGGGATTAGACCTAGAGTCGTTA
ATGATTTTGAGGGCACAGTATTTAATCAGGCTTCTCAGGTGTTGAACAGC
CGGATTCTCATTTCACCCCATGGTGCTGGATTAACAAACATCATTTTCAT
GCCGGTGGGAAGTGCGGTCATTGAAATTTTGCCCCTCGGATACGATGTCT
CATATTACTTCAAATGGCTCACGACTTCCTCGAGCCTCCGTCACCACCAG
TACATAAACCAAAATAACGATGACACAGTCATGACTGACTCATGTATAAC
TCTCTTTAATGGCTTCAACAAAAGCATTCAGGCCTGCGGTGAAGATGGAG
GATGCTTTTACTGCATGAAATCAGCCAAAACTAGAATCGATTTGCAACTT
TTTAGACCTTTACTGGAAGCTGCAATATCTCAAACAGCTCATTTACATCG
CGTGCCATGTTCGGCATAA

Coding sequence (CDS) from alignment at scaffold_61:37111..38379+

>mRNA_10649 ID=mRNA_10649|Name=jgi.p|Nanoce1779_2|569941|organism=Nannochloropsis oceanica|type=CDS|length=1269bp|location=Sequence derived from alignment at scaffold_61:37111..38379+ (Nannochloropsis oceanica)
ATGCCTCGCAATTTCTACACGGGAAATTTTACTGCTGAAGGGCATATGTA
TAGTATGGATCGTGTATTGAGATACATCGGAGAGGGACAGCAAGTGACGT
CGGATATGCAATCCTTGAAGGATTTAGAATCGCAACATAATCTGGCGATA
ATTCAACTAACAGGCACAACAATCGTATCCATGGCATTTCAGTACCACAT
TCCTCATTTTGTGGAGGCATTGCTGCCGCTAATCAACACATTGAGTCAAA
AGAAAAGGTTTGGTGTTTCACCCCCGTATCGTGTCATGATAGGCACATAT
CAATTCTGGCAAGGAGATACAGGCTTTCAACTCAATCTAACCGATATTGT
TCTGTCGGCTATAGAGGAGAACGAGCTTGCAAGCTCGTATGAAAAAGATT
GGCTTCGCCTCCTTGGTTGGAAAGGTGATTTGCCAATGGAAACAGAGTGG
TTTACGAAGGAACTTGGAATTCATAACTGGATGATCGATGACCGACTCTC
CCATTTACAAAACACTACTGACTATATAGTTTGCTTCGATCAACTGACTA
TTCCAAGTTATAGTTGGTACGGGACACCATTTAGCTCGATACTGTTCAGG
CGTTATTTGTACGATTTCCTAGCAATGCAACCTATCGCGTACGGAGAGTC
AAATGATGCCGCTCTATCCAATTTACAGAATATAACGAAGGATTTCAAAT
TATTACAACCTTGCGAACGGACTTCCGCAATCGAATCGCAGCCCGGAGAA
ATCGTCATGGTGCAAAGAAAATCTACCCGGGGCATCGCAAACTTTGACGA
AGTGGTGAATTTCGTCTTCGATGTCACGGGGATTAGACCTAGAGTCGTTA
ATGATTTTGAGGGCACAGTATTTAATCAGGCTTCTCAGGTGTTGAACAGC
CGGATTCTCATTTCACCCCATGGTGCTGGATTAACAAACATCATTTTCAT
GCCGGTGGGAAGTGCGGTCATTGAAATTTTGCCCCTCGGATACGATGTCT
CATATTACTTCAAATGGCTCACGACTTCCTCGAGCCTCCGTCACCACCAG
TACATAAACCAAAATAACGATGACACAGTCATGACTGACTCATGTATAAC
TCTCTTTAATGGCTTCAACAAAAGCATTCAGGCCTGCGGTGAAGATGGAG
GATGCTTTTACTGCATGAAATCAGCCAAAACTAGAATCGATTTGCAACTT
TTTAGACCTTTACTGGAAGCTGCAATATCTCAAACAGCTCATTTACATCG
CGTGCCATGTTCGGCATAA

Synonyms

Publications