jgi.p|Nanoce1779_2|634203, mRNA_10647 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|634203
Unique NamemRNA_10647
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1575
Alignment locationscaffold_61:31062..32881 -

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Properties
Property NameValue
TranscriptId634289
TrackFilteredModels2
ProteinId634203
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_61supercontigscaffold_61:31062..32881 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|634203gene_10647Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|634203mRNA_10647-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10647CDS_10647Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10647 ID=mRNA_10647|Name=jgi.p|Nanoce1779_2|634203|organism=Nannochloropsis oceanica|type=mRNA|length=1575bp
GGCCTGCTGCTACGTGTTAGCACTCGACACGCTACTATTGCTTAAGCTGG
TGCGGTTCCGGATCTTGATGTTCCATGCAAGAAAGACATACATAAGCACT
TGTAGAAGAGAAACCAAGGGGTAAATGACCAAGGAATAAAGCTGATCGAT
GCGGGATCGTACCTTTAAATGTACGAGGCCCAGGACGCTGGCCACAAGGC
AAAAAAGAAATGTGTTATTTAGGAGCGAAGAAAAGGAACAAAGCCAGGCC
CCCTCCTTGACATCCGATCAGAACCATTAAAAAAGCACGGTCAAAGGAAG
CGGTCTGCGCCCGAATCAAATCAACACACACAGGTCATCCGCGTTATGCA
TCACCAGCACAAGGGTGACAAAGATCAGCAGCGGGGGTCAGAGCACGACC
CTCTCCTTCTTCTGCAGCAAGAAGCTGCGCTCGTGGACGTGGGTGGGGAG
GTGGAGCCCCGCCAAACGTGCCCGCACCTCCACCTTGCTTCGCATCTTCA
CATCTCCCCGGACGACCTTGCCTCCTCGGTCACCCCAGGCCGCTGCATGA
CTTGTGGGAGCGAGGTCGAACCTTGGGTTTGTCTGGGGTGCAAGTGCGCC
GTTCACTGCTCACGGTACGTGAATGCTGATGCGGAGGCACATTTCTTTGC
TTCCCTGACGGCGGAGCGTGAGGAGAGATGGAGGGATGTGGTAACCGGGG
AAAGCAGTGGGGAAGGCAGGGGCGGAAGGCGGCTCAATACTGCCACTGGC
ATGCCCTTTCCGAACGGTGGAGGGAGGTCAAGGCAGGAGGAAGGAAAAGG
GCACGGCCTGGTGTTGTCGTTGAGCGACTTGTCCGTGTGGTGCTACCTTT
GCAGCAGCTACGTCAAGCATGACCGACTTGTTCCTTTCTTGGTGCGGGCC
GAGGCCCTGAAGTTTAACACTCCCGACAAGACAGCGCTGCTGGCAGGAAT
TCAGACGCGCTTTCAGACGGGGCTCGTGCTGCCGAACGGAATGGACGACG
CCGAAGAGGAGAAGGAGGGTGTGGCGGATGTTAAACCTACGCCTGCCCAA
TGTGTTTTTGAGCACCTCAAGGCTTGCAGTCTCCTGGCTAAAACCGTACG
AGTAGGGTCTGTGGCCGAGGCTCAGGCTCGCGGCGACCTGCGGAGCGTGT
TGGTGTTAAGCGAGGGCGAGGCTGATGGGGAGGAGGAGGGAGAAATAATA
GAGATGGGAATGGGAGGGGAAATCATGGTAATGCCGTCAGAGAAGGAAGA
GGTACGGGAGGCCTTGGCAGCAGGCAAGGAGCTGGTGGTTGTGCGGGTAG
GTTTGGGTGGGATAGCTGCAGGGCCTCAAGACGTGGAAGTGATGCTGCGG
CAAATGCTTGAGGCGACCTGAGAAAGGACGGAAATCCGATGAGATTATAT
CTTTTCGATATGCGCCTCCCTTCCCATTTCTCCCACTATATTATGGCGTG
GCACCAACATTTATGCTCGATTAAGAAGTCAGGCGGGTGACCGCCGTTTC
TCCCCACTTTTTTGCGTAACCGTTAGAGCACGAAGCGACTCGCTCGAGAA
AACACATAGGGTTGCGTCGATGGTC
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protein sequence of jgi.p|Nanoce1779_2|634203

>mRNA_10647-protein ID=mRNA_10647-protein|Name=jgi.p|Nanoce1779_2|634203|organism=Nannochloropsis oceanica|type=polypeptide|length=342bp
MHHQHKGDKDQQRGSEHDPLLLLQQEAALVDVGGEVEPRQTCPHLHLASH
LHISPDDLASSVTPGRCMTCGSEVEPWVCLGCKCAVHCSRYVNADAEAHF
FASLTAEREERWRDVVTGESSGEGRGGRRLNTATGMPFPNGGGRSRQEEG
KGHGLVLSLSDLSVWCYLCSSYVKHDRLVPFLVRAEALKFNTPDKTALLA
GIQTRFQTGLVLPNGMDDAEEEKEGVADVKPTPAQCVFEHLKACSLLAKT
VRVGSVAEAQARGDLRSVLVLSEGEADGEEEGEIIEMGMGGEIMVMPSEK
EEVREALAAGKELVVVRVGLGGIAAGPQDVEVMLRQMLEAT*
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mRNA from alignment at scaffold_61:31062..32881-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10647 ID=mRNA_10647|Name=jgi.p|Nanoce1779_2|634203|organism=Nannochloropsis oceanica|type=mRNA|length=1820bp|location=Sequence derived from alignment at scaffold_61:31062..32881- (Nannochloropsis oceanica)
GGCCTGCTGCTACGTGTTAGCACTCGACACGCTACTATTGCTTAAGCTGG
TGCGGTTCCGGATCTTGATGTTCCATGCAAGAAAGACATACATAAGCACT
TGTAGAAGAGAAACCAAGGGGTAAATGACCAAGGAATAAAGCTGATCGAT
GCGGGATCGTACCTTTAAATGTACGAGGCCCAGGACGCTGGCCACAAGGC
AAAAAAGAAATGTGTTATTTAGGAGCGAAGAAAAGGAACAAAGCCAGGCA
AGTAGTGACGGGATGGATGGAAGTGTCTGTTTCATTGATGTTGCTATGGT
TGTTGCTATGGTTGCTGTTGTTGTACAATTTATCAAGTTCATGTTGTTTA
GGAGGAGCAGATGTGAGGAGCCTAGTGAGGGGCTCCTTATGTTCCATGCA
ATTGTCCTTGCGTGAAATAATTGATAAAGTAAGCTATCGAGCTCTTCAAT
ATGTCGTTTTTAACACAATGCCTCACGCACAAAATCAAACAGGCCCCCTC
CTTGACATCCGATCAGAACCATTAAAAAAGCACGGTCAAAGGAAGCGGTC
TGCGCCCGAATCAAATCAACACACACAGGTCATCCGCGTTATGCATCACC
AGCACAAGGGTGACAAAGATCAGCAGCGGGGGTCAGAGCACGACCCTCTC
CTTCTTCTGCAGCAAGAAGCTGCGCTCGTGGACGTGGGTGGGGAGGTGGA
GCCCCGCCAAACGTGCCCGCACCTCCACCTTGCTTCGCATCTTCACATCT
CCCCGGACGACCTTGCCTCCTCGGTCACCCCAGGCCGCTGCATGACTTGT
GGGAGCGAGGTCGAACCTTGGGTTTGTCTGGGGTGCAAGTGCGCCGTTCA
CTGCTCACGGTACGTGAATGCTGATGCGGAGGCACATTTCTTTGCTTCCC
TGACGGCGGAGCGTGAGGAGAGATGGAGGGATGTGGTAACCGGGGAAAGC
AGTGGGGAAGGCAGGGGCGGAAGGCGGCTCAATACTGCCACTGGCATGCC
CTTTCCGAACGGTGGAGGGAGGTCAAGGCAGGAGGAAGGAAAAGGGCACG
GCCTGGTGTTGTCGTTGAGCGACTTGTCCGTGTGGTGCTACCTTTGCAGC
AGCTACGTCAAGCATGACCGACTTGTTCCTTTCTTGGTGCGGGCCGAGGC
CCTGAAGTTTAACACTCCCGACAAGACAGCGCTGCTGGCAGGAATTCAGA
CGCGCTTTCAGACGGGGCTCGTGCTGCCGAACGGAATGGACGACGCCGAA
GAGGAGAAGGAGGGTGTGGCGGATGTTAAACCTACGCCTGCCCAATGTGT
TTTTGAGCACCTCAAGGCTTGCAGTCTCCTGGCTAAAACCGTACGAGTAG
GGTCTGTGGCCGAGGCTCAGGCTCGCGGCGACCTGCGGAGCGTGTTGGTG
TTAAGCGAGGGCGAGGCTGATGGGGAGGAGGAGGGAGAAATAATAGAGAT
GGGAATGGGAGGGGAAATCATGGTAATGCCGTCAGAGAAGGAAGAGGTAC
GGGAGGCCTTGGCAGCAGGCAAGGAGCTGGTGGTTGTGCGGGTAGGTTTG
GGTGGGATAGCTGCAGGGCCTCAAGACGTGGAAGTGATGCTGCGGCAAAT
GCTTGAGGCGACCTGAGAAAGGACGGAAATCCGATGAGATTATATCTTTT
CGATATGCGCCTCCCTTCCCATTTCTCCCACTATATTATGGCGTGGCACC
AACATTTATGCTCGATTAAGAAGTCAGGCGGGTGACCGCCGTTTCTCCCC
ACTTTTTTGCGTAACCGTTAGAGCACGAAGCGACTCGCTCGAGAAAACAC
ATAGGGTTGCGTCGATGGTC
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Coding sequence (CDS) from alignment at scaffold_61:31062..32881-

>mRNA_10647 ID=mRNA_10647|Name=jgi.p|Nanoce1779_2|634203|organism=Nannochloropsis oceanica|type=CDS|length=1026bp|location=Sequence derived from alignment at scaffold_61:31062..32881- (Nannochloropsis oceanica)
ATGCATCACCAGCACAAGGGTGACAAAGATCAGCAGCGGGGGTCAGAGCA
CGACCCTCTCCTTCTTCTGCAGCAAGAAGCTGCGCTCGTGGACGTGGGTG
GGGAGGTGGAGCCCCGCCAAACGTGCCCGCACCTCCACCTTGCTTCGCAT
CTTCACATCTCCCCGGACGACCTTGCCTCCTCGGTCACCCCAGGCCGCTG
CATGACTTGTGGGAGCGAGGTCGAACCTTGGGTTTGTCTGGGGTGCAAGT
GCGCCGTTCACTGCTCACGGTACGTGAATGCTGATGCGGAGGCACATTTC
TTTGCTTCCCTGACGGCGGAGCGTGAGGAGAGATGGAGGGATGTGGTAAC
CGGGGAAAGCAGTGGGGAAGGCAGGGGCGGAAGGCGGCTCAATACTGCCA
CTGGCATGCCCTTTCCGAACGGTGGAGGGAGGTCAAGGCAGGAGGAAGGA
AAAGGGCACGGCCTGGTGTTGTCGTTGAGCGACTTGTCCGTGTGGTGCTA
CCTTTGCAGCAGCTACGTCAAGCATGACCGACTTGTTCCTTTCTTGGTGC
GGGCCGAGGCCCTGAAGTTTAACACTCCCGACAAGACAGCGCTGCTGGCA
GGAATTCAGACGCGCTTTCAGACGGGGCTCGTGCTGCCGAACGGAATGGA
CGACGCCGAAGAGGAGAAGGAGGGTGTGGCGGATGTTAAACCTACGCCTG
CCCAATGTGTTTTTGAGCACCTCAAGGCTTGCAGTCTCCTGGCTAAAACC
GTACGAGTAGGGTCTGTGGCCGAGGCTCAGGCTCGCGGCGACCTGCGGAG
CGTGTTGGTGTTAAGCGAGGGCGAGGCTGATGGGGAGGAGGAGGGAGAAA
TAATAGAGATGGGAATGGGAGGGGAAATCATGGTAATGCCGTCAGAGAAG
GAAGAGGTACGGGAGGCCTTGGCAGCAGGCAAGGAGCTGGTGGTTGTGCG
GGTAGGTTTGGGTGGGATAGCTGCAGGGCCTCAAGACGTGGAAGTGATGC
TGCGGCAAATGCTTGAGGCGACCTGA
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Synonyms
Publications