jgi.p|Nanoce1779_2|612012, mRNA_10646 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|612012
Unique NamemRNA_10646
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length652
Alignment locationscaffold_61:29646..30297 -

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Properties
Property NameValue
TranscriptId612098
TrackFilteredModels2
ProteinId612012
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_61supercontigscaffold_61:29646..30297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612012gene_10646Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612012mRNA_10646-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10646CDS_10646Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10646 ID=mRNA_10646|Name=jgi.p|Nanoce1779_2|612012|organism=Nannochloropsis oceanica|type=mRNA|length=652bp
ATGCCATTAAAATCTTGCGCTTGGCCAGGTCTTGGTCTTACTGCGGCTGC
TGCAGCCCCCATGAGCTTCGTTTCGACGCCGCCTTACAACGACAGTGTGG
AACTCGGTCCTACTTAGGGGGATGAAATAATCAAGAGAAGGATTGCAACG
AGCCAGTAAAAAAAGAAAATATGCAAAACAAACAACTCTTCATGCGGCCC
TGCACCGTTTTCCCTCCTCCCATCCCCTCCCTCACATGTATTTCCTTGGT
AAGCACTCTGTGGCCTCTTTCTCGTGCTCTGCCTCCTTCCTGTCCTTCTT
GTCCTTCTTATTCTTCTCTATCTTTTCTCCTCTTCTTATCCTATGTCCAT
ACGCCCACCTGTGTTGTCTCCATCCTCCTTCTCCTCCTCTTTTTCCCTTC
CTCCTTCTGCTCTCTTCCCTCCTCTTCTTTTTCTTCCACCTATTTCGTCT
CCTCCTTTTCGAGCATCTTGAACACCAATCCCTCTTCCTTCCCTCCACAC
ATCGTATTAGTCTCCTCTGAGTATACTAGAGATTCTCCCTCTGTCTTGAA
TGTGGTCCCACATGCCCTTTCCGTCCTGCCGTCCCGCTGTCGCCCAGCAC
GCCTGCACTCATCCTTAATGGCTTACGCGAAGTGCTTCTGTATGCTATCT
GT
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protein sequence of jgi.p|Nanoce1779_2|612012

>mRNA_10646-protein ID=mRNA_10646-protein|Name=jgi.p|Nanoce1779_2|612012|organism=Nannochloropsis oceanica|type=polypeptide|length=95bp
MYFLGKHSVASFSCSASFLSFLSFLFFSIFSPLLILCPYAHLCCLHPPSP
PLFPFLLLLSSLLFFFFHLFRLLLFEHLEHQSLFLPSTHRISLL*
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mRNA from alignment at scaffold_61:29646..30297-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10646 ID=mRNA_10646|Name=jgi.p|Nanoce1779_2|612012|organism=Nannochloropsis oceanica|type=mRNA|length=652bp|location=Sequence derived from alignment at scaffold_61:29646..30297- (Nannochloropsis oceanica)
ATGCCATTAAAATCTTGCGCTTGGCCAGGTCTTGGTCTTACTGCGGCTGC
TGCAGCCCCCATGAGCTTCGTTTCGACGCCGCCTTACAACGACAGTGTGG
AACTCGGTCCTACTTAGGGGGATGAAATAATCAAGAGAAGGATTGCAACG
AGCCAGTAAAAAAAGAAAATATGCAAAACAAACAACTCTTCATGCGGCCC
TGCACCGTTTTCCCTCCTCCCATCCCCTCCCTCACATGTATTTCCTTGGT
AAGCACTCTGTGGCCTCTTTCTCGTGCTCTGCCTCCTTCCTGTCCTTCTT
GTCCTTCTTATTCTTCTCTATCTTTTCTCCTCTTCTTATCCTATGTCCAT
ACGCCCACCTGTGTTGTCTCCATCCTCCTTCTCCTCCTCTTTTTCCCTTC
CTCCTTCTGCTCTCTTCCCTCCTCTTCTTTTTCTTCCACCTATTTCGTCT
CCTCCTTTTCGAGCATCTTGAACACCAATCCCTCTTCCTTCCCTCCACAC
ATCGTATTAGTCTCCTCTGAGTATACTAGAGATTCTCCCTCTGTCTTGAA
TGTGGTCCCACATGCCCTTTCCGTCCTGCCGTCCCGCTGTCGCCCAGCAC
GCCTGCACTCATCCTTAATGGCTTACGCGAAGTGCTTCTGTATGCTATCT
GT
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Coding sequence (CDS) from alignment at scaffold_61:29646..30297-

>mRNA_10646 ID=mRNA_10646|Name=jgi.p|Nanoce1779_2|612012|organism=Nannochloropsis oceanica|type=CDS|length=285bp|location=Sequence derived from alignment at scaffold_61:29646..30297- (Nannochloropsis oceanica)
ATGTATTTCCTTGGTAAGCACTCTGTGGCCTCTTTCTCGTGCTCTGCCTC
CTTCCTGTCCTTCTTGTCCTTCTTATTCTTCTCTATCTTTTCTCCTCTTC
TTATCCTATGTCCATACGCCCACCTGTGTTGTCTCCATCCTCCTTCTCCT
CCTCTTTTTCCCTTCCTCCTTCTGCTCTCTTCCCTCCTCTTCTTTTTCTT
CCACCTATTTCGTCTCCTCCTTTTCGAGCATCTTGAACACCAATCCCTCT
TCCTTCCCTCCACACATCGTATTAGTCTCCTCTGA
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Synonyms
Publications