jgi.p|Nanoce1779_2|612003, mRNA_10645 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|612003
Unique NamemRNA_10645
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2370
Alignment locationscaffold_61:21066..23435 -

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Properties
Property NameValue
TranscriptId612089
TrackFilteredModels2
ProteinId612003
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_61supercontigscaffold_61:21066..23435 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612003gene_10645Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612003mRNA_10645-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10645CDS_10645Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10645 ID=mRNA_10645|Name=jgi.p|Nanoce1779_2|612003|organism=Nannochloropsis oceanica|type=mRNA|length=2370bp
TCAAAAGTTTGACTCTTTGCTAACCTTTATTCGAAAGCACGCTGGACTGG
GAGAAAAGGACCAGACGTTATCCGTGCTTGAAAAGGAGAACCTCGTCGAA
ATACCAGTATTCTACGACAGTCTCTTTTTTAGAAGCGCTTTGGATATCAT
TAATTGCGTGCAAAACAACCACAACCGTTTTAGCAAGCATTTTGCCGAGA
TCCATCGCCATATTCAACCCTATGCCATATTTTTCCCTCAATTTCATCCC
ATCCCTGAAAATAACATCAACTTTTATGAAGGCTATACGGATATGACGAA
TTTAGTCGCAGCCAAGCTGGAGGATCCCAGCTTATTGACACCGCTGAAAA
ATCTCTTGGGCTTTTACGATTTGATGCAAAATAATGAGATGATTCCAAGA
CAAATTCAGGTTGCAAAATCATATGGCATAGCTGGATTCGCCATTTATTA
CTATTGGTTCAGCGACAATTCCGTCAGTCAAAAAAACATGGTCTTCCAAG
AGGTAATAGACCGATTTTTTGAAACTGTCTTAAAGGATTTCTCAGTCTTC
TTTGTGTATTGTAACGAAGCGTGGACCAAGAACGTGGCTTTTGGAACCCA
TAAAGGTGGATACACGATTGCAAATAACTATACTGCAGAGAACATCAGGA
TGAATATGCTCAATCTCGTCAAGTATTTTAAGCACCAAAATTATCGCAAA
ATCGGAAATCGGCCACTCTTCTTCTTGCATCATCCGCATGAAATGACAGA
TACTGAGATTCAATTGCTGAAGGCAGTAGGTGATTCAGTTATGAGAGAGA
ACGGTTTTTATGGAATTGAACTAATCGTGGACGGCAGGGAAGGGACGTAC
CCAGGTTTTCCTGGGTACTACTTGCATGCAAACTACAAGTCACCAAAATC
CACTGTGTTCATGAAGACCTCAACCCGCCCCCAGCATATCGACTACAAAG
CGTATGTGCGCAAATTCTTGCCGAAGGAAGAGAAGTTGGGAGACAATTCT
AGCACGATAAATTCAGTTTTTACAAATTTTGACAACACCGTGCGTTTTTA
TGCACACGACGAGGACCGGCAATTCGAGGGTGTGGGCAACAAGGCAATGT
TCATGACACGGACTCAAGGAAGGAAGGTCGCGCTTTTTAAGGAGTTCTTA
GATGTGCAACTTGTGAAATACTCTCAAAAGTCTGATCCCATTTCACAGAT
ATTCCTCATCAATGCTTGGAACGAATGGGGTGAGCAAATGGTGTTGGAGC
CGTCGAATGAAGAGGGATTTGCGTACCTTGAAGCTTTTCAGGAGAGGTTA
TTGCTCGCCCCTCTTTCAGATAGCGTACATAGCAGTGCATCCAGTAGATT
GGGTGGAAGGGGAATACATTCATGATAAGCTAAGAGTAAGTGTATTTCCA
TAGAAAACGGAGTCAAATCCTTGGACTCCAAGGAATCCATGGAAGAAAGG
GGAGGGAGAGTCCAAACCAAGGGGTGGGCCTCAAAACGTAACGCTAGCTC
GTAATGAAATGTACGAAAAGAAAAGCGTAGACGTCTATCATTATAACTAC
ATTATTCACAGCATCTCATTCATATGGCAAAGATTTCAACTCTGCATTTT
TATTTTTATTTTGGGGGGGGGCTCTCCTGGTAGTGTCTACTGAAGAGATT
GCGAAGGGAAGGCAGAAGTTTACACTGAACTGGGGAAAACCAGCTCGACG
ATTGGATTTTGAATGCTAAGGGTAGTATCAGTTTGAGTAAAGTCTAAGCC
CATTCATGTTTCTCACTTTATCTTCTCCAAATAACGCACGCCTTCACTTG
CACTCTGCTAAGTATTTTGTCACCATGCTGGTGGCGATTTTGCCACTTCA
GTATATTGCACTATTTTAATTTTGTGTACAAAGTGACGAGATAATTTCGG
ACGAGGTCACGTCATCCGTCTCCCCAAACTATGTACAAGCGACGACTTAC
AGCAGATGAGGACGCATTACATCAACTAACGAATGAATTCACGTGCAGGG
CCTGAATTGTCCAAAACTTGTGCGACATGTGGTGCAGGCGTGTGCGATGA
TCACTATGATGCTCTTTCAACCGGAATGGTGCTGGAACAAAGGAGCGACT
TGTTCAGAGCGGGATGGCGTTATCGTCCCGCGAAAATGCCAGTGGCCTGA
TGCCGGCAGCTAACCCGTCATGCGGGTCGGGCTTATTTTTGTGCTCAAAA
TATGATAGAAGTAGATGTCACCATGCCGGTGGCAAAGCGCCTAGAGGCGA
ATAAATCCCTAAAAAATAAAAACAATAAAAAAACTTAAATAACTTTCTGT
ATAGTCCGTATCAGGTTGTAATGTCGGTGGCTTGTAATGGTGATTAAAAC
CCCAAAAAAGTAAAAAGAAC
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protein sequence of jgi.p|Nanoce1779_2|612003

>mRNA_10645-protein ID=mRNA_10645-protein|Name=jgi.p|Nanoce1779_2|612003|organism=Nannochloropsis oceanica|type=polypeptide|length=361bp
MTNLVAAKLEDPSLLTPLKNLLGFYDLMQNNEMIPRQIQVAKSYGIAGFA
IYYYWFSDNSVSQKNMVFQEVIDRFFETVLKDFSVFFVYCNEAWTKNVAF
GTHKGGYTIANNYTAENIRMNMLNLVKYFKHQNYRKIGNRPLFFLHHPHE
MTDTEIQLLKAVGDSVMRENGFYGIELIVDGREGTYPGFPGYYLHANYKS
PKSTVFMKTSTRPQHIDYKAYVRKFLPKEEKLGDNSSTINSVFTNFDNTV
RFYAHDEDRQFEGVGNKAMFMTRTQGRKVALFKEFLDVQLVKYSQKSDPI
SQIFLINAWNEWGEQMVLEPSNEEGFAYLEAFQERLLLAPLSDSVHSSAS
SRLGGRGIHS*
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mRNA from alignment at scaffold_61:21066..23435-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10645 ID=mRNA_10645|Name=jgi.p|Nanoce1779_2|612003|organism=Nannochloropsis oceanica|type=mRNA|length=2370bp|location=Sequence derived from alignment at scaffold_61:21066..23435- (Nannochloropsis oceanica)
TCAAAAGTTTGACTCTTTGCTAACCTTTATTCGAAAGCACGCTGGACTGG
GAGAAAAGGACCAGACGTTATCCGTGCTTGAAAAGGAGAACCTCGTCGAA
ATACCAGTATTCTACGACAGTCTCTTTTTTAGAAGCGCTTTGGATATCAT
TAATTGCGTGCAAAACAACCACAACCGTTTTAGCAAGCATTTTGCCGAGA
TCCATCGCCATATTCAACCCTATGCCATATTTTTCCCTCAATTTCATCCC
ATCCCTGAAAATAACATCAACTTTTATGAAGGCTATACGGATATGACGAA
TTTAGTCGCAGCCAAGCTGGAGGATCCCAGCTTATTGACACCGCTGAAAA
ATCTCTTGGGCTTTTACGATTTGATGCAAAATAATGAGATGATTCCAAGA
CAAATTCAGGTTGCAAAATCATATGGCATAGCTGGATTCGCCATTTATTA
CTATTGGTTCAGCGACAATTCCGTCAGTCAAAAAAACATGGTCTTCCAAG
AGGTAATAGACCGATTTTTTGAAACTGTCTTAAAGGATTTCTCAGTCTTC
TTTGTGTATTGTAACGAAGCGTGGACCAAGAACGTGGCTTTTGGAACCCA
TAAAGGTGGATACACGATTGCAAATAACTATACTGCAGAGAACATCAGGA
TGAATATGCTCAATCTCGTCAAGTATTTTAAGCACCAAAATTATCGCAAA
ATCGGAAATCGGCCACTCTTCTTCTTGCATCATCCGCATGAAATGACAGA
TACTGAGATTCAATTGCTGAAGGCAGTAGGTGATTCAGTTATGAGAGAGA
ACGGTTTTTATGGAATTGAACTAATCGTGGACGGCAGGGAAGGGACGTAC
CCAGGTTTTCCTGGGTACTACTTGCATGCAAACTACAAGTCACCAAAATC
CACTGTGTTCATGAAGACCTCAACCCGCCCCCAGCATATCGACTACAAAG
CGTATGTGCGCAAATTCTTGCCGAAGGAAGAGAAGTTGGGAGACAATTCT
AGCACGATAAATTCAGTTTTTACAAATTTTGACAACACCGTGCGTTTTTA
TGCACACGACGAGGACCGGCAATTCGAGGGTGTGGGCAACAAGGCAATGT
TCATGACACGGACTCAAGGAAGGAAGGTCGCGCTTTTTAAGGAGTTCTTA
GATGTGCAACTTGTGAAATACTCTCAAAAGTCTGATCCCATTTCACAGAT
ATTCCTCATCAATGCTTGGAACGAATGGGGTGAGCAAATGGTGTTGGAGC
CGTCGAATGAAGAGGGATTTGCGTACCTTGAAGCTTTTCAGGAGAGGTTA
TTGCTCGCCCCTCTTTCAGATAGCGTACATAGCAGTGCATCCAGTAGATT
GGGTGGAAGGGGAATACATTCATGATAAGCTAAGAGTAAGTGTATTTCCA
TAGAAAACGGAGTCAAATCCTTGGACTCCAAGGAATCCATGGAAGAAAGG
GGAGGGAGAGTCCAAACCAAGGGGTGGGCCTCAAAACGTAACGCTAGCTC
GTAATGAAATGTACGAAAAGAAAAGCGTAGACGTCTATCATTATAACTAC
ATTATTCACAGCATCTCATTCATATGGCAAAGATTTCAACTCTGCATTTT
TATTTTTATTTTGGGGGGGGGCTCTCCTGGTAGTGTCTACTGAAGAGATT
GCGAAGGGAAGGCAGAAGTTTACACTGAACTGGGGAAAACCAGCTCGACG
ATTGGATTTTGAATGCTAAGGGTAGTATCAGTTTGAGTAAAGTCTAAGCC
CATTCATGTTTCTCACTTTATCTTCTCCAAATAACGCACGCCTTCACTTG
CACTCTGCTAAGTATTTTGTCACCATGCTGGTGGCGATTTTGCCACTTCA
GTATATTGCACTATTTTAATTTTGTGTACAAAGTGACGAGATAATTTCGG
ACGAGGTCACGTCATCCGTCTCCCCAAACTATGTACAAGCGACGACTTAC
AGCAGATGAGGACGCATTACATCAACTAACGAATGAATTCACGTGCAGGG
CCTGAATTGTCCAAAACTTGTGCGACATGTGGTGCAGGCGTGTGCGATGA
TCACTATGATGCTCTTTCAACCGGAATGGTGCTGGAACAAAGGAGCGACT
TGTTCAGAGCGGGATGGCGTTATCGTCCCGCGAAAATGCCAGTGGCCTGA
TGCCGGCAGCTAACCCGTCATGCGGGTCGGGCTTATTTTTGTGCTCAAAA
TATGATAGAAGTAGATGTCACCATGCCGGTGGCAAAGCGCCTAGAGGCGA
ATAAATCCCTAAAAAATAAAAACAATAAAAAAACTTAAATAACTTTCTGT
ATAGTCCGTATCAGGTTGTAATGTCGGTGGCTTGTAATGGTGATTAAAAC
CCCAAAAAAGTAAAAAGAAC
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Coding sequence (CDS) from alignment at scaffold_61:21066..23435-

>mRNA_10645 ID=mRNA_10645|Name=jgi.p|Nanoce1779_2|612003|organism=Nannochloropsis oceanica|type=CDS|length=1083bp|location=Sequence derived from alignment at scaffold_61:21066..23435- (Nannochloropsis oceanica)
ATGACGAATTTAGTCGCAGCCAAGCTGGAGGATCCCAGCTTATTGACACC
GCTGAAAAATCTCTTGGGCTTTTACGATTTGATGCAAAATAATGAGATGA
TTCCAAGACAAATTCAGGTTGCAAAATCATATGGCATAGCTGGATTCGCC
ATTTATTACTATTGGTTCAGCGACAATTCCGTCAGTCAAAAAAACATGGT
CTTCCAAGAGGTAATAGACCGATTTTTTGAAACTGTCTTAAAGGATTTCT
CAGTCTTCTTTGTGTATTGTAACGAAGCGTGGACCAAGAACGTGGCTTTT
GGAACCCATAAAGGTGGATACACGATTGCAAATAACTATACTGCAGAGAA
CATCAGGATGAATATGCTCAATCTCGTCAAGTATTTTAAGCACCAAAATT
ATCGCAAAATCGGAAATCGGCCACTCTTCTTCTTGCATCATCCGCATGAA
ATGACAGATACTGAGATTCAATTGCTGAAGGCAGTAGGTGATTCAGTTAT
GAGAGAGAACGGTTTTTATGGAATTGAACTAATCGTGGACGGCAGGGAAG
GGACGTACCCAGGTTTTCCTGGGTACTACTTGCATGCAAACTACAAGTCA
CCAAAATCCACTGTGTTCATGAAGACCTCAACCCGCCCCCAGCATATCGA
CTACAAAGCGTATGTGCGCAAATTCTTGCCGAAGGAAGAGAAGTTGGGAG
ACAATTCTAGCACGATAAATTCAGTTTTTACAAATTTTGACAACACCGTG
CGTTTTTATGCACACGACGAGGACCGGCAATTCGAGGGTGTGGGCAACAA
GGCAATGTTCATGACACGGACTCAAGGAAGGAAGGTCGCGCTTTTTAAGG
AGTTCTTAGATGTGCAACTTGTGAAATACTCTCAAAAGTCTGATCCCATT
TCACAGATATTCCTCATCAATGCTTGGAACGAATGGGGTGAGCAAATGGT
GTTGGAGCCGTCGAATGAAGAGGGATTTGCGTACCTTGAAGCTTTTCAGG
AGAGGTTATTGCTCGCCCCTCTTTCAGATAGCGTACATAGCAGTGCATCC
AGTAGATTGGGTGGAAGGGGAATACATTCATGA
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Synonyms
Publications