jgi.p|Nanoce1779_2|569937, mRNA_10644 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|569937
Unique Name	mRNA_10644
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2394
Alignment location	scaffold_61:17547..19940 -

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Properties


Property Name	Value
TranscriptId	570023
Track	FilteredModels2
ProteinId	569937

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_61	supercontig	scaffold_61:17547..19940 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|569937	gene_10644	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10644	CDS_10644	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|569937	mRNA_10644-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_61:17547..19940-
coding sequence from alignment at scaffold_61:17547..19940-

mRNA sequence

>mRNA_10644 ID=mRNA_10644|Name=jgi.p|Nanoce1779_2|569937|organism=Nannochloropsis oceanica|type=mRNA|length=2394bp
ATGGAAGTGGCGGAAGGGAAGGGAAAGAAGGCCCCACTCTCAGTTCTATA
CAACCTAGCGAGGCTGGAGCACACACTATCGAATGCCGGTTATACAGTGA
CATTGGACCTGCCGACAAGTAAAAATGGCCATCTTTCTTGGTTTAAGGAC
GCACTGGACCGTCATAGTGGCATACGAGAGGTTGATTTTTCGCTTCTCAA
GTACTCAAGGCTCGAAGATATTGTGGTAGATATTGGAGACCTCTTTCTCG
ACATGATTTCGCTTGATGATATATTGCACACAGAGCTTTTCCAAATTGTC
CAGTTCCTTGCTTCATCCCTCAATCCCCTGATTTACTCGTCTGTAGAGCA
TCTGCGACAGACTTTGACCTCCATGAATCCAAAGGGGTTCAATGCTCTGG
ATTTTTTAATGGAGCATGACATGCCTCTGAATGTTTCAGGTGCAAAAAGC
CTGGAGGCCCAATGGGAAGAAGCTTTTGTCTCACACGTAGCATTTGATGC
ACAGCTACCACTTTACATCGCCGGCGGAAATACAGGCGCACATAGAAAGT
GTCAGCAGCTTTTATGCACTGACAAGTTCCTTCTGGGTGCCATGACATTC
TTCCCAGAAGTGTTAAAGAGGTCCCCGGAAGTTATGGCTGCGGTCGATAT
GCTGCTTCTTGTGGAGGCCAATAGCTTCACTGGACTGAAGTATTCTACTT
TTTCACATTTGATTGCGACACTACGCGACGCTCGATTCACTTTCCACGTG
CAAGATTCCTCCATGCTACATCCTTTCCACGACCTTGTAAGATTTGGGAC
TCTGACTCCCTTGCCGCCCTGTCTCTGTACAAAGGAGAAAATCGAAGCTC
TAAGATCGTTGGATACTGATTCCAAAAGCAAAAGGAAGCTGGCAGAGATC
CGTTCATACATTAAAAGACTTGGTTTATCTTCCATACCTTTGGTCTTCGA
AATGACCTATATTTTGAATTTGTTTGAAACACCTGGAAAAGAGGACCTTG
CAACGCAGGTGCTGCTTGAGTTTACAGCTTCTCATCACTCAGATAGATTG
GTTGAAGGCCTGCGTCTCTTTTTGGAGCGAGATCCTATTCATGAATCCTT
ATTCGCCCGCGCTCTTTGTCATCACTTTCCCAGTATCGGTGATGTGACAT
GCAAAACGGCTAAACCGAGCAGGCTTCTTATTGTGTCGCATAGCTTGGTA
TCAGATGGTGCCCCCGTCGTTCTTGTGGACTATATCCTCTTTCTGTCTCG
CGTCTTGAGATTGGATATAAAAATTGTGACCAGGGCAGGCATGCCACAAC
ATACATCCCTTCAGCGTGACCTTGAAAGAGCTAATATTCCTATTAGCTAC
GACAGCACATTCGACGCAAGAGATTTTGATGTCATCTATATCAACACTCT
GGACATGTGGTGGTACAATGGCCTTTGTTCGAAAGCAAAACGAGAAATAT
CTGCATCCGATGGATGGGCTTCAAAAGTCATATGGTGGGTGCATGAATCT
GCAAGAGATCATTTCACAGATGTTCATCCCTACTTGCCAAAAGTCTTGAA
AAGTGTAAATCAGGCTATTTTTACTACGCCTCAGAGCCGAGATGTCTACA
AAGACATTATTGCCGACATTCCCTCTACCGTCATTGCGAACCCATTGGAC
ATCAATTTAAGTCGGGATGCGCAGTTGCAAAGGCTTCGTCTCAAACACCG
ATCTGAAGAAATACAAGTGACCACCTCCGTCACATTTATATTGATCGGAA
CAGTTCACCCTGGCCGTCACCAGCTCGATTTTGTGCATGCTGCACTGCAG
CTCCTTCAATCTTGCCCGAAAGCTCAGACTTTTTATTTCGTTATCGTCGG
ATTTGATGGGGTCGCAGATGAGTACGAGGCAGAAGTGAAAGCGGCAATAG
ATGATGCGGGAGAGGATGTCGCGAAACATTTCAGATTAGTTCCTAGATTA
AGTCACTATGATTGCCTCCAATTGCTATCTGGTGCTGATGTCCTGGTAAG
CATGAGCGACTTTGAGGCATTTGGAATGACACTCCTAGAAGCCATGAGCA
TGGGGAAACCTGTCATCACCAGCAAAGTGGATGGCGTGCCGAGTGTTATT
TACCACGAAGCTATAGACGTGCCCTTAGGAAATGTTCTTCTTCTAAAAGA
AGCTATGGGGTCCATGCTGGAGGAAAAAAATAGGTCCTTGCATGCGATGC
TAGCGATCCGGCATTATGAAAATTTCCAAACACTCGATACCAGGCTCAGA
CATATTCAAGTTCTTGCGAACGCTATCAGGGGGAAACAAATAGTGTCACA
TTCTCCTCCTCTCGATACGAAGACCTTAGAACAAAAAAGAAAACACAAGA
TTAAAAGCCATAGACGAGGAAGAAAAAAAAGGAAGATAAATTGA

protein sequence of jgi.p|Nanoce1779_2|569937

>mRNA_10644-protein ID=mRNA_10644-protein|Name=jgi.p|Nanoce1779_2|569937|organism=Nannochloropsis oceanica|type=polypeptide|length=798bp
MEVAEGKGKKAPLSVLYNLARLEHTLSNAGYTVTLDLPTSKNGHLSWFKD
ALDRHSGIREVDFSLLKYSRLEDIVVDIGDLFLDMISLDDILHTELFQIV
QFLASSLNPLIYSSVEHLRQTLTSMNPKGFNALDFLMEHDMPLNVSGAKS
LEAQWEEAFVSHVAFDAQLPLYIAGGNTGAHRKCQQLLCTDKFLLGAMTF
FPEVLKRSPEVMAAVDMLLLVEANSFTGLKYSTFSHLIATLRDARFTFHV
QDSSMLHPFHDLVRFGTLTPLPPCLCTKEKIEALRSLDTDSKSKRKLAEI
RSYIKRLGLSSIPLVFEMTYILNLFETPGKEDLATQVLLEFTASHHSDRL
VEGLRLFLERDPIHESLFARALCHHFPSIGDVTCKTAKPSRLLIVSHSLV
SDGAPVVLVDYILFLSRVLRLDIKIVTRAGMPQHTSLQRDLERANIPISY
DSTFDARDFDVIYINTLDMWWYNGLCSKAKREISASDGWASKVIWWVHES
ARDHFTDVHPYLPKVLKSVNQAIFTTPQSRDVYKDIIADIPSTVIANPLD
INLSRDAQLQRLRLKHRSEEIQVTTSVTFILIGTVHPGRHQLDFVHAALQ
LLQSCPKAQTFYFVIVGFDGVADEYEAEVKAAIDDAGEDVAKHFRLVPRL
SHYDCLQLLSGADVLVSMSDFEAFGMTLLEAMSMGKPVITSKVDGVPSVI
YHEAIDVPLGNVLLLKEAMGSMLEEKNRSLHAMLAIRHYENFQTLDTRLR
HIQVLANAIRGKQIVSHSPPLDTKTLEQKRKHKIKSHRRGRKKRKIN*

mRNA from alignment at scaffold_61:17547..19940-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10644 ID=mRNA_10644|Name=jgi.p|Nanoce1779_2|569937|organism=Nannochloropsis oceanica|type=mRNA|length=2394bp|location=Sequence derived from alignment at scaffold_61:17547..19940- (Nannochloropsis oceanica)
ATGGAAGTGGCGGAAGGGAAGGGAAAGAAGGCCCCACTCTCAGTTCTATA
CAACCTAGCGAGGCTGGAGCACACACTATCGAATGCCGGTTATACAGTGA
CATTGGACCTGCCGACAAGTAAAAATGGCCATCTTTCTTGGTTTAAGGAC
GCACTGGACCGTCATAGTGGCATACGAGAGGTTGATTTTTCGCTTCTCAA
GTACTCAAGGCTCGAAGATATTGTGGTAGATATTGGAGACCTCTTTCTCG
ACATGATTTCGCTTGATGATATATTGCACACAGAGCTTTTCCAAATTGTC
CAGTTCCTTGCTTCATCCCTCAATCCCCTGATTTACTCGTCTGTAGAGCA
TCTGCGACAGACTTTGACCTCCATGAATCCAAAGGGGTTCAATGCTCTGG
ATTTTTTAATGGAGCATGACATGCCTCTGAATGTTTCAGGTGCAAAAAGC
CTGGAGGCCCAATGGGAAGAAGCTTTTGTCTCACACGTAGCATTTGATGC
ACAGCTACCACTTTACATCGCCGGCGGAAATACAGGCGCACATAGAAAGT
GTCAGCAGCTTTTATGCACTGACAAGTTCCTTCTGGGTGCCATGACATTC
TTCCCAGAAGTGTTAAAGAGGTCCCCGGAAGTTATGGCTGCGGTCGATAT
GCTGCTTCTTGTGGAGGCCAATAGCTTCACTGGACTGAAGTATTCTACTT
TTTCACATTTGATTGCGACACTACGCGACGCTCGATTCACTTTCCACGTG
CAAGATTCCTCCATGCTACATCCTTTCCACGACCTTGTAAGATTTGGGAC
TCTGACTCCCTTGCCGCCCTGTCTCTGTACAAAGGAGAAAATCGAAGCTC
TAAGATCGTTGGATACTGATTCCAAAAGCAAAAGGAAGCTGGCAGAGATC
CGTTCATACATTAAAAGACTTGGTTTATCTTCCATACCTTTGGTCTTCGA
AATGACCTATATTTTGAATTTGTTTGAAACACCTGGAAAAGAGGACCTTG
CAACGCAGGTGCTGCTTGAGTTTACAGCTTCTCATCACTCAGATAGATTG
GTTGAAGGCCTGCGTCTCTTTTTGGAGCGAGATCCTATTCATGAATCCTT
ATTCGCCCGCGCTCTTTGTCATCACTTTCCCAGTATCGGTGATGTGACAT
GCAAAACGGCTAAACCGAGCAGGCTTCTTATTGTGTCGCATAGCTTGGTA
TCAGATGGTGCCCCCGTCGTTCTTGTGGACTATATCCTCTTTCTGTCTCG
CGTCTTGAGATTGGATATAAAAATTGTGACCAGGGCAGGCATGCCACAAC
ATACATCCCTTCAGCGTGACCTTGAAAGAGCTAATATTCCTATTAGCTAC
GACAGCACATTCGACGCAAGAGATTTTGATGTCATCTATATCAACACTCT
GGACATGTGGTGGTACAATGGCCTTTGTTCGAAAGCAAAACGAGAAATAT
CTGCATCCGATGGATGGGCTTCAAAAGTCATATGGTGGGTGCATGAATCT
GCAAGAGATCATTTCACAGATGTTCATCCCTACTTGCCAAAAGTCTTGAA
AAGTGTAAATCAGGCTATTTTTACTACGCCTCAGAGCCGAGATGTCTACA
AAGACATTATTGCCGACATTCCCTCTACCGTCATTGCGAACCCATTGGAC
ATCAATTTAAGTCGGGATGCGCAGTTGCAAAGGCTTCGTCTCAAACACCG
ATCTGAAGAAATACAAGTGACCACCTCCGTCACATTTATATTGATCGGAA
CAGTTCACCCTGGCCGTCACCAGCTCGATTTTGTGCATGCTGCACTGCAG
CTCCTTCAATCTTGCCCGAAAGCTCAGACTTTTTATTTCGTTATCGTCGG
ATTTGATGGGGTCGCAGATGAGTACGAGGCAGAAGTGAAAGCGGCAATAG
ATGATGCGGGAGAGGATGTCGCGAAACATTTCAGATTAGTTCCTAGATTA
AGTCACTATGATTGCCTCCAATTGCTATCTGGTGCTGATGTCCTGGTAAG
CATGAGCGACTTTGAGGCATTTGGAATGACACTCCTAGAAGCCATGAGCA
TGGGGAAACCTGTCATCACCAGCAAAGTGGATGGCGTGCCGAGTGTTATT
TACCACGAAGCTATAGACGTGCCCTTAGGAAATGTTCTTCTTCTAAAAGA
AGCTATGGGGTCCATGCTGGAGGAAAAAAATAGGTCCTTGCATGCGATGC
TAGCGATCCGGCATTATGAAAATTTCCAAACACTCGATACCAGGCTCAGA
CATATTCAAGTTCTTGCGAACGCTATCAGGGGGAAACAAATAGTGTCACA
TTCTCCTCCTCTCGATACGAAGACCTTAGAACAAAAAAGAAAACACAAGA
TTAAAAGCCATAGACGAGGAAGAAAAAAAAGGAAGATAAATTGA

Coding sequence (CDS) from alignment at scaffold_61:17547..19940-

>mRNA_10644 ID=mRNA_10644|Name=jgi.p|Nanoce1779_2|569937|organism=Nannochloropsis oceanica|type=CDS|length=2394bp|location=Sequence derived from alignment at scaffold_61:17547..19940- (Nannochloropsis oceanica)
ATGGAAGTGGCGGAAGGGAAGGGAAAGAAGGCCCCACTCTCAGTTCTATA
CAACCTAGCGAGGCTGGAGCACACACTATCGAATGCCGGTTATACAGTGA
CATTGGACCTGCCGACAAGTAAAAATGGCCATCTTTCTTGGTTTAAGGAC
GCACTGGACCGTCATAGTGGCATACGAGAGGTTGATTTTTCGCTTCTCAA
GTACTCAAGGCTCGAAGATATTGTGGTAGATATTGGAGACCTCTTTCTCG
ACATGATTTCGCTTGATGATATATTGCACACAGAGCTTTTCCAAATTGTC
CAGTTCCTTGCTTCATCCCTCAATCCCCTGATTTACTCGTCTGTAGAGCA
TCTGCGACAGACTTTGACCTCCATGAATCCAAAGGGGTTCAATGCTCTGG
ATTTTTTAATGGAGCATGACATGCCTCTGAATGTTTCAGGTGCAAAAAGC
CTGGAGGCCCAATGGGAAGAAGCTTTTGTCTCACACGTAGCATTTGATGC
ACAGCTACCACTTTACATCGCCGGCGGAAATACAGGCGCACATAGAAAGT
GTCAGCAGCTTTTATGCACTGACAAGTTCCTTCTGGGTGCCATGACATTC
TTCCCAGAAGTGTTAAAGAGGTCCCCGGAAGTTATGGCTGCGGTCGATAT
GCTGCTTCTTGTGGAGGCCAATAGCTTCACTGGACTGAAGTATTCTACTT
TTTCACATTTGATTGCGACACTACGCGACGCTCGATTCACTTTCCACGTG
CAAGATTCCTCCATGCTACATCCTTTCCACGACCTTGTAAGATTTGGGAC
TCTGACTCCCTTGCCGCCCTGTCTCTGTACAAAGGAGAAAATCGAAGCTC
TAAGATCGTTGGATACTGATTCCAAAAGCAAAAGGAAGCTGGCAGAGATC
CGTTCATACATTAAAAGACTTGGTTTATCTTCCATACCTTTGGTCTTCGA
AATGACCTATATTTTGAATTTGTTTGAAACACCTGGAAAAGAGGACCTTG
CAACGCAGGTGCTGCTTGAGTTTACAGCTTCTCATCACTCAGATAGATTG
GTTGAAGGCCTGCGTCTCTTTTTGGAGCGAGATCCTATTCATGAATCCTT
ATTCGCCCGCGCTCTTTGTCATCACTTTCCCAGTATCGGTGATGTGACAT
GCAAAACGGCTAAACCGAGCAGGCTTCTTATTGTGTCGCATAGCTTGGTA
TCAGATGGTGCCCCCGTCGTTCTTGTGGACTATATCCTCTTTCTGTCTCG
CGTCTTGAGATTGGATATAAAAATTGTGACCAGGGCAGGCATGCCACAAC
ATACATCCCTTCAGCGTGACCTTGAAAGAGCTAATATTCCTATTAGCTAC
GACAGCACATTCGACGCAAGAGATTTTGATGTCATCTATATCAACACTCT
GGACATGTGGTGGTACAATGGCCTTTGTTCGAAAGCAAAACGAGAAATAT
CTGCATCCGATGGATGGGCTTCAAAAGTCATATGGTGGGTGCATGAATCT
GCAAGAGATCATTTCACAGATGTTCATCCCTACTTGCCAAAAGTCTTGAA
AAGTGTAAATCAGGCTATTTTTACTACGCCTCAGAGCCGAGATGTCTACA
AAGACATTATTGCCGACATTCCCTCTACCGTCATTGCGAACCCATTGGAC
ATCAATTTAAGTCGGGATGCGCAGTTGCAAAGGCTTCGTCTCAAACACCG
ATCTGAAGAAATACAAGTGACCACCTCCGTCACATTTATATTGATCGGAA
CAGTTCACCCTGGCCGTCACCAGCTCGATTTTGTGCATGCTGCACTGCAG
CTCCTTCAATCTTGCCCGAAAGCTCAGACTTTTTATTTCGTTATCGTCGG
ATTTGATGGGGTCGCAGATGAGTACGAGGCAGAAGTGAAAGCGGCAATAG
ATGATGCGGGAGAGGATGTCGCGAAACATTTCAGATTAGTTCCTAGATTA
AGTCACTATGATTGCCTCCAATTGCTATCTGGTGCTGATGTCCTGGTAAG
CATGAGCGACTTTGAGGCATTTGGAATGACACTCCTAGAAGCCATGAGCA
TGGGGAAACCTGTCATCACCAGCAAAGTGGATGGCGTGCCGAGTGTTATT
TACCACGAAGCTATAGACGTGCCCTTAGGAAATGTTCTTCTTCTAAAAGA
AGCTATGGGGTCCATGCTGGAGGAAAAAAATAGGTCCTTGCATGCGATGC
TAGCGATCCGGCATTATGAAAATTTCCAAACACTCGATACCAGGCTCAGA
CATATTCAAGTTCTTGCGAACGCTATCAGGGGGAAACAAATAGTGTCACA
TTCTCCTCCTCTCGATACGAAGACCTTAGAACAAAAAAGAAAACACAAGA
TTAAAAGCCATAGACGAGGAAGAAAAAAAAGGAAGATAAATTGA

Synonyms

Publications