jgi.p|Nanoce1779_2|611995, mRNA_10643 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|611995
Unique Name	mRNA_10643
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1190
Alignment location	scaffold_61:14253..15442 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	612081
Track	FilteredModels2
ProteinId	611995

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_61	supercontig	scaffold_61:14253..15442 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|611995	gene_10643	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|611995	mRNA_10643-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10643	CDS_10643	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_61:14253..15442+
coding sequence from alignment at scaffold_61:14253..15442+

mRNA sequence

>mRNA_10643 ID=mRNA_10643|Name=jgi.p|Nanoce1779_2|611995|organism=Nannochloropsis oceanica|type=mRNA|length=1190bp
TTTGGTGCTCCAAATATGATAGAAGGAGATGTCTTTATGCCGGTAACAAG
GCTCGTTATGGTGATTAAAACCCCAAAAAAGTAAAAAGAGCAAAAAACTT
AGGTAACTTTCTGTATCGTCCGTTGACCCGGTAAAGGGATGCAAGCAATC
AATCAGATGAGGGAGAGTTGGGAGCATTGAACTGTAAGGGCTTAGACTCG
TCCTTGCGAATTCTCCATTTCTTGCGCGGAGACCATTTTTGAACCCCTTT
CGTCTCTCGGACCGAAATTGTCCGTTGCCTACTTCTCCTCCATCGGACCT
ACCATCGACGGCCGCATCAAGCCCGACTTGATCGCACCTGGCAACGCCAT
TAATTCCGCCAAGACTCAGACAAGCTGCGATACAGGGAGAAGGCAGGGAA
CGTCCATGTCATGCCCTCATGTGTCTGGATTGGCACTGTTACTCCGCCAG
TATTTTATGGAGGGATGGTACCCCACCGGAGTTAAGAACTCTGCCGACAG
ATTCGTTCCCTCGGGGGTCTTGATTAAAGCGATGCTTATCAACTCATGTG
TCCCTGTAGAGAAGTATGTCAACCTTACCTCCACCATCAAACTAGGCCCT
CCTTCCAATAAATACCAGGGCTTTGAACAAGTCCGGATGACGAGGGTCTT
GTGACTGGGAACCGCCGCGTCTCAGCCGTCCCTGTTTGTCGTGGACTCGA
CAGAGACGTCGACTGGATGGGTGCACACGTACAAGTTCACCGTCCGATCA
AATTACGTGCCCCTGACGGGATCCGACACTGTGATGGATGCGTTTGAGGC
GACGTTGGCATGGATAGAGCCTGAGGTCTCGCCGGGGGCTTCCAGAATTG
TGTTGCATGATCTCGACCTGGTGGCCAGTCTGGACTCTCAGGGACTTCCT
ATCAAAAAAATATACCCCAACAATCTCTAGAAGCTCGACAATCTGAACGT
GCTCGAGAAACTTAGCTTCCCGAACCCGACTGCGACGTGATTACGGTGAA
CGTCACAGGAACGTCCATTACGATGACAGATAAACAGGCGTATTCTTTGG
TTGCGAGTGGCCCCTTCGTATCCGCCGCGTGGTACTGTCAAAATAATGAT
AAGGGGACTTATGGGGGGCATCCTTCGTGGAGAATGGAGCACTGTACTCT
GCCGTGCATTGGAAGTTTCAAGAAAAGGCCCTTGTGTTGT

protein sequence of jgi.p|Nanoce1779_2|611995

>mRNA_10643-protein ID=mRNA_10643-protein|Name=jgi.p|Nanoce1779_2|611995|organism=Nannochloropsis oceanica|type=polypeptide|length=83bp
MSCPHVSGLALLLRQYFMEGWYPTGVKNSADRFVPSGVLIKAMLINSCVP
VEKYVNLTSTIKLGPPSNKYQGFEQVRMTRVL*

mRNA from alignment at scaffold_61:14253..15442+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10643 ID=mRNA_10643|Name=jgi.p|Nanoce1779_2|611995|organism=Nannochloropsis oceanica|type=mRNA|length=1190bp|location=Sequence derived from alignment at scaffold_61:14253..15442+ (Nannochloropsis oceanica)
TTTGGTGCTCCAAATATGATAGAAGGAGATGTCTTTATGCCGGTAACAAG
GCTCGTTATGGTGATTAAAACCCCAAAAAAGTAAAAAGAGCAAAAAACTT
AGGTAACTTTCTGTATCGTCCGTTGACCCGGTAAAGGGATGCAAGCAATC
AATCAGATGAGGGAGAGTTGGGAGCATTGAACTGTAAGGGCTTAGACTCG
TCCTTGCGAATTCTCCATTTCTTGCGCGGAGACCATTTTTGAACCCCTTT
CGTCTCTCGGACCGAAATTGTCCGTTGCCTACTTCTCCTCCATCGGACCT
ACCATCGACGGCCGCATCAAGCCCGACTTGATCGCACCTGGCAACGCCAT
TAATTCCGCCAAGACTCAGACAAGCTGCGATACAGGGAGAAGGCAGGGAA
CGTCCATGTCATGCCCTCATGTGTCTGGATTGGCACTGTTACTCCGCCAG
TATTTTATGGAGGGATGGTACCCCACCGGAGTTAAGAACTCTGCCGACAG
ATTCGTTCCCTCGGGGGTCTTGATTAAAGCGATGCTTATCAACTCATGTG
TCCCTGTAGAGAAGTATGTCAACCTTACCTCCACCATCAAACTAGGCCCT
CCTTCCAATAAATACCAGGGCTTTGAACAAGTCCGGATGACGAGGGTCTT
GTGACTGGGAACCGCCGCGTCTCAGCCGTCCCTGTTTGTCGTGGACTCGA
CAGAGACGTCGACTGGATGGGTGCACACGTACAAGTTCACCGTCCGATCA
AATTACGTGCCCCTGACGGGATCCGACACTGTGATGGATGCGTTTGAGGC
GACGTTGGCATGGATAGAGCCTGAGGTCTCGCCGGGGGCTTCCAGAATTG
TGTTGCATGATCTCGACCTGGTGGCCAGTCTGGACTCTCAGGGACTTCCT
ATCAAAAAAATATACCCCAACAATCTCTAGAAGCTCGACAATCTGAACGT
GCTCGAGAAACTTAGCTTCCCGAACCCGACTGCGACGTGATTACGGTGAA
CGTCACAGGAACGTCCATTACGATGACAGATAAACAGGCGTATTCTTTGG
TTGCGAGTGGCCCCTTCGTATCCGCCGCGTGGTACTGTCAAAATAATGAT
AAGGGGACTTATGGGGGGCATCCTTCGTGGAGAATGGAGCACTGTACTCT
GCCGTGCATTGGAAGTTTCAAGAAAAGGCCCTTGTGTTGT

Coding sequence (CDS) from alignment at scaffold_61:14253..15442+

>mRNA_10643 ID=mRNA_10643|Name=jgi.p|Nanoce1779_2|611995|organism=Nannochloropsis oceanica|type=CDS|length=249bp|location=Sequence derived from alignment at scaffold_61:14253..15442+ (Nannochloropsis oceanica)
ATGTCATGCCCTCATGTGTCTGGATTGGCACTGTTACTCCGCCAGTATTT
TATGGAGGGATGGTACCCCACCGGAGTTAAGAACTCTGCCGACAGATTCG
TTCCCTCGGGGGTCTTGATTAAAGCGATGCTTATCAACTCATGTGTCCCT
GTAGAGAAGTATGTCAACCTTACCTCCACCATCAAACTAGGCCCTCCTTC
CAATAAATACCAGGGCTTTGAACAAGTCCGGATGACGAGGGTCTTGTGA

Synonyms

Publications