jgi.p|Nanoce1779_2|611992, mRNA_10642 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611992
Unique NamemRNA_10642
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1795
Alignment locationscaffold_61:11232..13026 -

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Properties
Property NameValue
TranscriptId612078
TrackFilteredModels2
ProteinId611992
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_61supercontigscaffold_61:11232..13026 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611992gene_10642Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611992mRNA_10642-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10642CDS_10642Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10642 ID=mRNA_10642|Name=jgi.p|Nanoce1779_2|611992|organism=Nannochloropsis oceanica|type=mRNA|length=1795bp
ATCGGCTTAATGAGCTAGGGTACAAGGTCATGCTTTCAGTACCAGAATGC
CCATGGGCAGAAAATGTACTCGAAATTGCACGAACGCTACTTGGAAATCA
TTTCGTCAACCTCCGGGAGCTTGAAGATTCAAAACGACTCCTGTCGTTTC
AAGAAGTAATCCTTGTTCACCAGGCGCCTTCCAAGGTGTCCTTTTTGAGT
TTTCCACAAAATGTGGTGAATATCTTGCAAAATCAATGGAACGATGGGAT
TGAAAATAATGCCTACAACGTTTTCCTAACTCGTAGTACCACCAATGTGT
ATCGAATACTCGAGAATCATGGCGAGGTTGAACACTTCTTTCGAACTCAT
GGGTTTTTGATTATCGATCCAGAATCTCATTCGAATGAAGCTCTTTTCAA
CTTGCTGAAAAACGCTAGAAACATAGTAATCACCAACGGCTCAGCCCTCT
CCAGTCTGATTTTTTTCAGGCTCACAAGTAGAATATTTTGCCTCAATTCT
GCCGGATATCAACCGAAGTGGCGCCAGGGCATCGCATCGGAAAGAGATCT
TCCTTCCGATGCCAAAGAAAGAGAAGATTTTGAGAAGAGAATCTGGAGAA
ATGCAGTGAGTCGATTCAATTTCACCTATGTTGATGCATTTATGAACCGT
ATATCTGATGAGCAGTTGAATGATGTTATTGCGGCGGTGAATAAGGATGT
CATGAGCCATAATGCGACAACTCAGTGACACTTGACCGTTTGAGTGTAAC
TATTAAGAGCCATTATAATTAAACGAGATAAAAGCATCAGCCGATGCAAC
AAAACCATGCTTGTCATAGGAGAAATGAGTAACAAAATGTGAATGATCGG
AGGTAGCACACTGATAAGGAGAGTGAAGCCACATACAAAGACAGCCATGA
GACTCAATACAAGAAAAAACATAATTTCTAAGGATCAAAGCATCAAGTAT
GTTCTCTACTTTCAAGCAAGGGCGGACACGTGATCCGATATCTCGTCCCG
GGTCGACCCGGTATGGCCGTCAACCCAGCGGAGGGATGTGTTGTGGGAGG
AGTGGGTCAGGTGTTAGCCCCTACCCTCAACCGTCGTGAGCTTCGATGGG
CGCCCCCCCCTCCCTCAGCGGAAATCCTCGTTTAGATCATTTCGATACTT
GGTCACCCGGGGACCCGTGACCAGACCCGGGTCTTTCTTTGACCTAGGTC
CACTTCCTGTTTATGCCGTATACGATCTATCCTTCCTCCACAGGGCCTGT
CCACGGCAGTCCACGCCTAAATTTTTCCCAAAATGATCTGACGAGATGAT
TTTGCGAGAGTTTAGCCATGGAGGGTGTTTCTCCACCTTTTTTGTTTCTC
TTTCGCCACAATGAACCGATTATTCTAAAAAGTGTTCACTTTTCTTCTTC
TCGCCGGTGCGATTCCAGGGCTGTGCCGAACATGATGTTCAATTTTTATA
CCATAAGCTGTGTCTCGCGTAAATGTACCTGGAACGAACGTCGACGCGTC
ATGTCAACGTCACGTCACATCAACCCCACGTCGACGTGACGACTCGGACG
TCGTGGGGTTGAAGTATGGACTTCTTGCTTCTAAAGGCCAGAAACAGCGA
CTTTGTGTTCACGGAAAAATTATGCTTTTTTGTCAGCCCTCAGATCATGG
AATAGCAGTCCCTCTCAATTCCTTACCATGCACACTTTTCTCACTAATCA
TGAAGATATATAGATGTTTATCAAAGATCCACAAAATATTTCGACAAATT
AAGATGCTCAAGCAGAATCAATATTTATCTCACAAACCAATCAAT
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protein sequence of jgi.p|Nanoce1779_2|611992

>mRNA_10642-protein ID=mRNA_10642-protein|Name=jgi.p|Nanoce1779_2|611992|organism=Nannochloropsis oceanica|type=polypeptide|length=233bp
MLSVPECPWAENVLEIARTLLGNHFVNLRELEDSKRLLSFQEVILVHQAP
SKVSFLSFPQNVVNILQNQWNDGIENNAYNVFLTRSTTNVYRILENHGEV
EHFFRTHGFLIIDPESHSNEALFNLLKNARNIVITNGSALSSLIFFRLTS
RIFCLNSAGYQPKWRQGIASERDLPSDAKEREDFEKRIWRNAVSRFNFTY
VDAFMNRISDEQLNDVIAAVNKDVMSHNATTQ*
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mRNA from alignment at scaffold_61:11232..13026-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10642 ID=mRNA_10642|Name=jgi.p|Nanoce1779_2|611992|organism=Nannochloropsis oceanica|type=mRNA|length=1795bp|location=Sequence derived from alignment at scaffold_61:11232..13026- (Nannochloropsis oceanica)
ATCGGCTTAATGAGCTAGGGTACAAGGTCATGCTTTCAGTACCAGAATGC
CCATGGGCAGAAAATGTACTCGAAATTGCACGAACGCTACTTGGAAATCA
TTTCGTCAACCTCCGGGAGCTTGAAGATTCAAAACGACTCCTGTCGTTTC
AAGAAGTAATCCTTGTTCACCAGGCGCCTTCCAAGGTGTCCTTTTTGAGT
TTTCCACAAAATGTGGTGAATATCTTGCAAAATCAATGGAACGATGGGAT
TGAAAATAATGCCTACAACGTTTTCCTAACTCGTAGTACCACCAATGTGT
ATCGAATACTCGAGAATCATGGCGAGGTTGAACACTTCTTTCGAACTCAT
GGGTTTTTGATTATCGATCCAGAATCTCATTCGAATGAAGCTCTTTTCAA
CTTGCTGAAAAACGCTAGAAACATAGTAATCACCAACGGCTCAGCCCTCT
CCAGTCTGATTTTTTTCAGGCTCACAAGTAGAATATTTTGCCTCAATTCT
GCCGGATATCAACCGAAGTGGCGCCAGGGCATCGCATCGGAAAGAGATCT
TCCTTCCGATGCCAAAGAAAGAGAAGATTTTGAGAAGAGAATCTGGAGAA
ATGCAGTGAGTCGATTCAATTTCACCTATGTTGATGCATTTATGAACCGT
ATATCTGATGAGCAGTTGAATGATGTTATTGCGGCGGTGAATAAGGATGT
CATGAGCCATAATGCGACAACTCAGTGACACTTGACCGTTTGAGTGTAAC
TATTAAGAGCCATTATAATTAAACGAGATAAAAGCATCAGCCGATGCAAC
AAAACCATGCTTGTCATAGGAGAAATGAGTAACAAAATGTGAATGATCGG
AGGTAGCACACTGATAAGGAGAGTGAAGCCACATACAAAGACAGCCATGA
GACTCAATACAAGAAAAAACATAATTTCTAAGGATCAAAGCATCAAGTAT
GTTCTCTACTTTCAAGCAAGGGCGGACACGTGATCCGATATCTCGTCCCG
GGTCGACCCGGTATGGCCGTCAACCCAGCGGAGGGATGTGTTGTGGGAGG
AGTGGGTCAGGTGTTAGCCCCTACCCTCAACCGTCGTGAGCTTCGATGGG
CGCCCCCCCCTCCCTCAGCGGAAATCCTCGTTTAGATCATTTCGATACTT
GGTCACCCGGGGACCCGTGACCAGACCCGGGTCTTTCTTTGACCTAGGTC
CACTTCCTGTTTATGCCGTATACGATCTATCCTTCCTCCACAGGGCCTGT
CCACGGCAGTCCACGCCTAAATTTTTCCCAAAATGATCTGACGAGATGAT
TTTGCGAGAGTTTAGCCATGGAGGGTGTTTCTCCACCTTTTTTGTTTCTC
TTTCGCCACAATGAACCGATTATTCTAAAAAGTGTTCACTTTTCTTCTTC
TCGCCGGTGCGATTCCAGGGCTGTGCCGAACATGATGTTCAATTTTTATA
CCATAAGCTGTGTCTCGCGTAAATGTACCTGGAACGAACGTCGACGCGTC
ATGTCAACGTCACGTCACATCAACCCCACGTCGACGTGACGACTCGGACG
TCGTGGGGTTGAAGTATGGACTTCTTGCTTCTAAAGGCCAGAAACAGCGA
CTTTGTGTTCACGGAAAAATTATGCTTTTTTGTCAGCCCTCAGATCATGG
AATAGCAGTCCCTCTCAATTCCTTACCATGCACACTTTTCTCACTAATCA
TGAAGATATATAGATGTTTATCAAAGATCCACAAAATATTTCGACAAATT
AAGATGCTCAAGCAGAATCAATATTTATCTCACAAACCAATCAAT
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Coding sequence (CDS) from alignment at scaffold_61:11232..13026-

>mRNA_10642 ID=mRNA_10642|Name=jgi.p|Nanoce1779_2|611992|organism=Nannochloropsis oceanica|type=CDS|length=699bp|location=Sequence derived from alignment at scaffold_61:11232..13026- (Nannochloropsis oceanica)
ATGCTTTCAGTACCAGAATGCCCATGGGCAGAAAATGTACTCGAAATTGC
ACGAACGCTACTTGGAAATCATTTCGTCAACCTCCGGGAGCTTGAAGATT
CAAAACGACTCCTGTCGTTTCAAGAAGTAATCCTTGTTCACCAGGCGCCT
TCCAAGGTGTCCTTTTTGAGTTTTCCACAAAATGTGGTGAATATCTTGCA
AAATCAATGGAACGATGGGATTGAAAATAATGCCTACAACGTTTTCCTAA
CTCGTAGTACCACCAATGTGTATCGAATACTCGAGAATCATGGCGAGGTT
GAACACTTCTTTCGAACTCATGGGTTTTTGATTATCGATCCAGAATCTCA
TTCGAATGAAGCTCTTTTCAACTTGCTGAAAAACGCTAGAAACATAGTAA
TCACCAACGGCTCAGCCCTCTCCAGTCTGATTTTTTTCAGGCTCACAAGT
AGAATATTTTGCCTCAATTCTGCCGGATATCAACCGAAGTGGCGCCAGGG
CATCGCATCGGAAAGAGATCTTCCTTCCGATGCCAAAGAAAGAGAAGATT
TTGAGAAGAGAATCTGGAGAAATGCAGTGAGTCGATTCAATTTCACCTAT
GTTGATGCATTTATGAACCGTATATCTGATGAGCAGTTGAATGATGTTAT
TGCGGCGGTGAATAAGGATGTCATGAGCCATAATGCGACAACTCAGTGA
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Synonyms
Publications