jgi.p|Nanoce1779_2|575187, mRNA_1064 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575187
Unique NamemRNA_1064
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length569
Alignment locationscaffold_2:1131266..1131834 +

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Properties
Property NameValue
TranscriptId575273
TrackFilteredModels2
ProteinId575187
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1131266..1131834 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575187gene_1064Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575187mRNA_1064-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1064CDS_1064Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1064 ID=mRNA_1064|Name=jgi.p|Nanoce1779_2|575187|organism=Nannochloropsis oceanica|type=mRNA|length=569bp
AGAGAGAGGGCCTCCGAGACAGGGATGAAGGAGACAAGGGAATGGTCGTG
ATGGAAAAGGACAGTCAAGGCGCGGACGGCCACAAGGCTGGAAGGCGAGG
TTTGGAGACGCTTCCACAGTGACTTTGCTAGGTCTTGTTTTTGCTGCTTA
TGTTGAGGGGAGGAGGAGGAGGAGGCGGTGGAGGGCTTCTTGCCCTTTTT
CAATTGCTTATTGTTGTTGATGCTGCCGTCGGTACTGCTGCTGCTGCTTA
TGCCATTGATGTCACTGCTGTCGTCCAATGCCCAAAGCTGCATGAGCGCA
ATTGCAGCTTGGTTGACCAAGAACTCTTCTCCACCTTCCTCCTCTACCAG
CGCCTGCACCATACGCGTCGCTTTCATTTTCAACGCCAAGAGCGACGGAG
AAGGTGGAGTAGAAGTACTACCATTTACAGCTAAAACAGAAGGTAAGCAC
CGCAACGCCGTTATTCGCTCCGTCAATGTCTTATCCACCCCTTCAATCCT
CCCCATCAGGTCACTAGCCAACTCGTCCACCAATTCCCTCTTCCCATGCC
GCAACACCCCCTCCCTCCC
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protein sequence of jgi.p|Nanoce1779_2|575187

>mRNA_1064-protein ID=mRNA_1064-protein|Name=jgi.p|Nanoce1779_2|575187|organism=Nannochloropsis oceanica|type=polypeptide|length=95bp
MLRGGGGGGGGGLLALFQLLIVVDAAVGTAAAAYAIDVTAVVQCPKLHER
NCSLVDQELFSTFLLYQRLHHTRRFHFQRQERRRRWSRSTTIYS*
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mRNA from alignment at scaffold_2:1131266..1131834+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1064 ID=mRNA_1064|Name=jgi.p|Nanoce1779_2|575187|organism=Nannochloropsis oceanica|type=mRNA|length=569bp|location=Sequence derived from alignment at scaffold_2:1131266..1131834+ (Nannochloropsis oceanica)
AGAGAGAGGGCCTCCGAGACAGGGATGAAGGAGACAAGGGAATGGTCGTG
ATGGAAAAGGACAGTCAAGGCGCGGACGGCCACAAGGCTGGAAGGCGAGG
TTTGGAGACGCTTCCACAGTGACTTTGCTAGGTCTTGTTTTTGCTGCTTA
TGTTGAGGGGAGGAGGAGGAGGAGGCGGTGGAGGGCTTCTTGCCCTTTTT
CAATTGCTTATTGTTGTTGATGCTGCCGTCGGTACTGCTGCTGCTGCTTA
TGCCATTGATGTCACTGCTGTCGTCCAATGCCCAAAGCTGCATGAGCGCA
ATTGCAGCTTGGTTGACCAAGAACTCTTCTCCACCTTCCTCCTCTACCAG
CGCCTGCACCATACGCGTCGCTTTCATTTTCAACGCCAAGAGCGACGGAG
AAGGTGGAGTAGAAGTACTACCATTTACAGCTAAAACAGAAGGTAAGCAC
CGCAACGCCGTTATTCGCTCCGTCAATGTCTTATCCACCCCTTCAATCCT
CCCCATCAGGTCACTAGCCAACTCGTCCACCAATTCCCTCTTCCCATGCC
GCAACACCCCCTCCCTCCC
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Coding sequence (CDS) from alignment at scaffold_2:1131266..1131834+

>mRNA_1064 ID=mRNA_1064|Name=jgi.p|Nanoce1779_2|575187|organism=Nannochloropsis oceanica|type=CDS|length=285bp|location=Sequence derived from alignment at scaffold_2:1131266..1131834+ (Nannochloropsis oceanica)
ATGTTGAGGGGAGGAGGAGGAGGAGGCGGTGGAGGGCTTCTTGCCCTTTT
TCAATTGCTTATTGTTGTTGATGCTGCCGTCGGTACTGCTGCTGCTGCTT
ATGCCATTGATGTCACTGCTGTCGTCCAATGCCCAAAGCTGCATGAGCGC
AATTGCAGCTTGGTTGACCAAGAACTCTTCTCCACCTTCCTCCTCTACCA
GCGCCTGCACCATACGCGTCGCTTTCATTTTCAACGCCAAGAGCGACGGA
GAAGGTGGAGTAGAAGTACTACCATTTACAGCTAA
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Synonyms
Publications