jgi.p|Nanoce1779_2|611986, mRNA_10639 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611986
Unique NamemRNA_10639
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1768
Alignment locationscaffold_61:5235..7002 -

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Properties
Property NameValue
TranscriptId612072
TrackFilteredModels2
ProteinId611986
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_61supercontigscaffold_61:5235..7002 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611986gene_10639Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611986mRNA_10639-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10639CDS_10639Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10639 ID=mRNA_10639|Name=jgi.p|Nanoce1779_2|611986|organism=Nannochloropsis oceanica|type=mRNA|length=1768bp
ACAGGCGGAGACAGCTATGCGTCACGGTATTCATTCATGAAGTTTGCAAG
TGTACGCCTGCAAAATACAGGTCTGGCCATATTTTCATGTTGATAAAACG
CTCATAAATTACCACTCGACTTAAAAACTATGAAGGGCAAAACAATTCAT
TTATTTGGAGCTTTAATTTTGTTATCGTACATACTATTTAAATGGATGCT
ATTGGGTAGCTCCACTCATGGGAACCCCCTGATCCAACATGAGAACAGAA
TTTACTATATAGATGATGGTGTTTCTAATACCCTTGAGACCAAGCGCCGA
TTTCAAAATTCAGGAATCAACACCTTCCTTTCCATTCTGGAAGAGGTCCT
TCAACCTAAAGTCGACCAAATAGTCCTGGTCTGCTTTATTGATCAATTAG
GTTTTTGTGGCGGTATAGGTGACCGGATTAAGGGTATACCCTATGCTGTG
GCGCTTGCTCGTCTGTCTGGGCGCCAGCTCATTCTTCACCGTTCTCTACT
TGAAAATGTCCCCTTTGATCAGGATTTGACGCTCGATACCCACCATCACT
TTGTTGATTTCAGCTGCACGAGTGAAAACGTGGAAAATCTGATGAAATCA
GATGCTAAAACTCTTTCTATCACTGTCAACTGTCACCCTCTGGATCCTTC
TCTCCTCTCATCGCAACATTCCCAGCTTATCGACTTGCAAGCTATCTTTG
AGGAATGTGCCATTCCATATCTCTGCGGGGCTGCAGCCGTTCACCAAGCT
AATGTCTTCCAAGATGGACTCAATGTTGCAAGACGTCTGGTGGCTGCCAT
GCCCATGTGGCCATTTCGGAATTATACAGCCCTGCATATTCGTGCGGGAG
GTTCCAATATTACGATCGACAACACCTACACAATTAAAGCCGTAGATTGG
GAGGATGGCTATGCGTCAGATGTTCCCCAATACTGGATTGATGTCTTCAA
GGAATCAGTATCGTCTATCCATTGTGATAAACACCTCGCAATTGTATCTG
ACTCTATTCGTTTAGTGTCTGAATTGCAATTTAATGCTGGAGATTGGCTG
ATGATGACACGGTGCTGCAGCCAGCCTCTTCACAGGGACCGCACGCGTCG
TCAAGATTTCTTCCTTCAAGAAGTCATTGATCTATTTATTCTGGCTCGTT
CTCAGAAAATAATTGCAGGTTATGGAGGATTTGCTGTGCTAGGACGCTAT
TGGTTGGGTAGAGATGGCCCAGAAATGGAGGTAGTCGTAAGTAAAGATGA
CATTCGAAGCCAAATGAATATGATTCGACTAGAAAGTGGTTGTAAATCGA
AGAATTAGTTGTGTCCCGGCTTTCGTGGGGGGTTGCATCACGACCAAAAA
AACAAATTCAGCAAGAAGGCCAAGGACAATAGCGTGGAGGTATCGTCGTG
TGGCCTCAAGCCAGACGGCCTGAAGTTCGACGCCATAGAGAGCACGCGGT
AAGAGGAGCTGAAGGCAAGGATTGAGGCAGTGAATGACGGCAAGGCTGTT
CAGACCTAGCTCACCGGCTTTCCTGTGGCGAATAGCCCTGTGGTGTGTCC
CTTTCCCTCCTGCCATTCGGTTGTGTGGAAGTACAAATTGATGATCCACA
TGTGTGGCATGCACATCCATCTCTTCGTCAGGGTTAACCCTAACCCTAAC
CCTAACAGAAGGATTAGCACCATAGTGGGGGGAGGGGGGGGGGGCTTGAA
GGCCTTATCGCTTGTCACAAGGACATGGGGGAGAAACCAAATATCTCGTG
AAGTTAGACGATTTGCGA
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protein sequence of jgi.p|Nanoce1779_2|611986

>mRNA_10639-protein ID=mRNA_10639-protein|Name=jgi.p|Nanoce1779_2|611986|organism=Nannochloropsis oceanica|type=polypeptide|length=393bp
MKGKTIHLFGALILLSYILFKWMLLGSSTHGNPLIQHENRIYYIDDGVSN
TLETKRRFQNSGINTFLSILEEVLQPKVDQIVLVCFIDQLGFCGGIGDRI
KGIPYAVALARLSGRQLILHRSLLENVPFDQDLTLDTHHHFVDFSCTSEN
VENLMKSDAKTLSITVNCHPLDPSLLSSQHSQLIDLQAIFEECAIPYLCG
AAAVHQANVFQDGLNVARRLVAAMPMWPFRNYTALHIRAGGSNITIDNTY
TIKAVDWEDGYASDVPQYWIDVFKESVSSIHCDKHLAIVSDSIRLVSELQ
FNAGDWLMMTRCCSQPLHRDRTRRQDFFLQEVIDLFILARSQKIIAGYGG
FAVLGRYWLGRDGPEMEVVVSKDDIRSQMNMIRLESGCKSKN*
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mRNA from alignment at scaffold_61:5235..7002-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10639 ID=mRNA_10639|Name=jgi.p|Nanoce1779_2|611986|organism=Nannochloropsis oceanica|type=mRNA|length=1768bp|location=Sequence derived from alignment at scaffold_61:5235..7002- (Nannochloropsis oceanica)
ACAGGCGGAGACAGCTATGCGTCACGGTATTCATTCATGAAGTTTGCAAG
TGTACGCCTGCAAAATACAGGTCTGGCCATATTTTCATGTTGATAAAACG
CTCATAAATTACCACTCGACTTAAAAACTATGAAGGGCAAAACAATTCAT
TTATTTGGAGCTTTAATTTTGTTATCGTACATACTATTTAAATGGATGCT
ATTGGGTAGCTCCACTCATGGGAACCCCCTGATCCAACATGAGAACAGAA
TTTACTATATAGATGATGGTGTTTCTAATACCCTTGAGACCAAGCGCCGA
TTTCAAAATTCAGGAATCAACACCTTCCTTTCCATTCTGGAAGAGGTCCT
TCAACCTAAAGTCGACCAAATAGTCCTGGTCTGCTTTATTGATCAATTAG
GTTTTTGTGGCGGTATAGGTGACCGGATTAAGGGTATACCCTATGCTGTG
GCGCTTGCTCGTCTGTCTGGGCGCCAGCTCATTCTTCACCGTTCTCTACT
TGAAAATGTCCCCTTTGATCAGGATTTGACGCTCGATACCCACCATCACT
TTGTTGATTTCAGCTGCACGAGTGAAAACGTGGAAAATCTGATGAAATCA
GATGCTAAAACTCTTTCTATCACTGTCAACTGTCACCCTCTGGATCCTTC
TCTCCTCTCATCGCAACATTCCCAGCTTATCGACTTGCAAGCTATCTTTG
AGGAATGTGCCATTCCATATCTCTGCGGGGCTGCAGCCGTTCACCAAGCT
AATGTCTTCCAAGATGGACTCAATGTTGCAAGACGTCTGGTGGCTGCCAT
GCCCATGTGGCCATTTCGGAATTATACAGCCCTGCATATTCGTGCGGGAG
GTTCCAATATTACGATCGACAACACCTACACAATTAAAGCCGTAGATTGG
GAGGATGGCTATGCGTCAGATGTTCCCCAATACTGGATTGATGTCTTCAA
GGAATCAGTATCGTCTATCCATTGTGATAAACACCTCGCAATTGTATCTG
ACTCTATTCGTTTAGTGTCTGAATTGCAATTTAATGCTGGAGATTGGCTG
ATGATGACACGGTGCTGCAGCCAGCCTCTTCACAGGGACCGCACGCGTCG
TCAAGATTTCTTCCTTCAAGAAGTCATTGATCTATTTATTCTGGCTCGTT
CTCAGAAAATAATTGCAGGTTATGGAGGATTTGCTGTGCTAGGACGCTAT
TGGTTGGGTAGAGATGGCCCAGAAATGGAGGTAGTCGTAAGTAAAGATGA
CATTCGAAGCCAAATGAATATGATTCGACTAGAAAGTGGTTGTAAATCGA
AGAATTAGTTGTGTCCCGGCTTTCGTGGGGGGTTGCATCACGACCAAAAA
AACAAATTCAGCAAGAAGGCCAAGGACAATAGCGTGGAGGTATCGTCGTG
TGGCCTCAAGCCAGACGGCCTGAAGTTCGACGCCATAGAGAGCACGCGGT
AAGAGGAGCTGAAGGCAAGGATTGAGGCAGTGAATGACGGCAAGGCTGTT
CAGACCTAGCTCACCGGCTTTCCTGTGGCGAATAGCCCTGTGGTGTGTCC
CTTTCCCTCCTGCCATTCGGTTGTGTGGAAGTACAAATTGATGATCCACA
TGTGTGGCATGCACATCCATCTCTTCGTCAGGGTTAACCCTAACCCTAAC
CCTAACAGAAGGATTAGCACCATAGTGGGGGGAGGGGGGGGGGGCTTGAA
GGCCTTATCGCTTGTCACAAGGACATGGGGGAGAAACCAAATATCTCGTG
AAGTTAGACGATTTGCGA
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Coding sequence (CDS) from alignment at scaffold_61:5235..7002-

>mRNA_10639 ID=mRNA_10639|Name=jgi.p|Nanoce1779_2|611986|organism=Nannochloropsis oceanica|type=CDS|length=1179bp|location=Sequence derived from alignment at scaffold_61:5235..7002- (Nannochloropsis oceanica)
ATGAAGGGCAAAACAATTCATTTATTTGGAGCTTTAATTTTGTTATCGTA
CATACTATTTAAATGGATGCTATTGGGTAGCTCCACTCATGGGAACCCCC
TGATCCAACATGAGAACAGAATTTACTATATAGATGATGGTGTTTCTAAT
ACCCTTGAGACCAAGCGCCGATTTCAAAATTCAGGAATCAACACCTTCCT
TTCCATTCTGGAAGAGGTCCTTCAACCTAAAGTCGACCAAATAGTCCTGG
TCTGCTTTATTGATCAATTAGGTTTTTGTGGCGGTATAGGTGACCGGATT
AAGGGTATACCCTATGCTGTGGCGCTTGCTCGTCTGTCTGGGCGCCAGCT
CATTCTTCACCGTTCTCTACTTGAAAATGTCCCCTTTGATCAGGATTTGA
CGCTCGATACCCACCATCACTTTGTTGATTTCAGCTGCACGAGTGAAAAC
GTGGAAAATCTGATGAAATCAGATGCTAAAACTCTTTCTATCACTGTCAA
CTGTCACCCTCTGGATCCTTCTCTCCTCTCATCGCAACATTCCCAGCTTA
TCGACTTGCAAGCTATCTTTGAGGAATGTGCCATTCCATATCTCTGCGGG
GCTGCAGCCGTTCACCAAGCTAATGTCTTCCAAGATGGACTCAATGTTGC
AAGACGTCTGGTGGCTGCCATGCCCATGTGGCCATTTCGGAATTATACAG
CCCTGCATATTCGTGCGGGAGGTTCCAATATTACGATCGACAACACCTAC
ACAATTAAAGCCGTAGATTGGGAGGATGGCTATGCGTCAGATGTTCCCCA
ATACTGGATTGATGTCTTCAAGGAATCAGTATCGTCTATCCATTGTGATA
AACACCTCGCAATTGTATCTGACTCTATTCGTTTAGTGTCTGAATTGCAA
TTTAATGCTGGAGATTGGCTGATGATGACACGGTGCTGCAGCCAGCCTCT
TCACAGGGACCGCACGCGTCGTCAAGATTTCTTCCTTCAAGAAGTCATTG
ATCTATTTATTCTGGCTCGTTCTCAGAAAATAATTGCAGGTTATGGAGGA
TTTGCTGTGCTAGGACGCTATTGGTTGGGTAGAGATGGCCCAGAAATGGA
GGTAGTCGTAAGTAAAGATGACATTCGAAGCCAAATGAATATGATTCGAC
TAGAAAGTGGTTGTAAATCGAAGAATTAG
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Synonyms
Publications