jgi.p|Nanoce1779_2|611981, mRNA_10637 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611981
Unique NamemRNA_10637
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length971
Alignment locationscaffold_61:578..1548 +

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Properties
Property NameValue
TranscriptId612067
TrackFilteredModels2
ProteinId611981
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_61supercontigscaffold_61:578..1548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611981gene_10637Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611981mRNA_10637-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10637CDS_10637Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10637 ID=mRNA_10637|Name=jgi.p|Nanoce1779_2|611981|organism=Nannochloropsis oceanica|type=mRNA|length=971bp
CCGTCGCTCTCCGTGGGGCCGTTCCTGTCTTCGTGGATGTGGCAGGCGGT
GACGACTTAAACCTGGATCCAGAGGCCGTCCGGCGCAGCGTGACAGACAA
AACCAAAGCGATCATCGTCGTCCACTACGGGGGCAAGGCGTGTAACATGG
ATGCCATCATGCTAGTTGCTGAGGAGCACCAGCTCACTGTCATCGAGGAT
GCCGCCCAGGCATTCTTGAGCACGTACAACGGCAAGTACCTCGGAACCAT
CGGCCATATTGGTTGCCTCTCTTTTCACTATACTAAGAACACGATTTGCG
GGGAAGGGGGCGCCCTGCTCGTCAATGACCCCAAGTTCCACTTCCAAGCG
GTAATTGTGCGCGAGAAAGGCACCAACCGCACAGAGTTCATGCTGGGGAA
AATATGCAAGTACGAGTGGCTCTGCTTGGGCTCCTCTTACGTCCCCTCAG
AGCTTTGCGCGGCGTTTCTGCTGCCCCAGCTGCACGATGCTGAGGAGGTG
ACACGGCGCCGCCGCCTCATCTGCACTGCATACACCAACCTGTTAGCCCC
GCTTGCCGCGCAATGCCTCTTGACCATCCCCAAACCTACAGAAGCCAGCG
CAGATGGTGTCAATGGGGCAGGGGGGGGTCCAACGCACGGAAATGGTCAC
CTGTTTGCGGTGCTTTTTCCGTCGCCAGAAGCGCGACAAGCAGCGCAGGC
GGCAATGGCCGAGCGAAACATCCAGTGCCTTACACACTTCGTCCCTCTAC
ACTTGTCGGAAGGCGGCAAAAGGTACGGCCGCATCTCTGGGTCTTTAGAA
CGCACTGTAGCAGCTGCGATGTGCCTCTTGCGTCTGCCCGTGTGGCCGGG
GATGCATTTTGGTCACGTCCATCGTGTTGTCGATGCCCTTTTCCAGCACT
TCAGTCAGGAGGCGCCTAGCATTCGCAGTGTCATTGATATTTCTCTACCC
AAGCACTGACAGGCTATAAGT
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protein sequence of jgi.p|Nanoce1779_2|611981

>mRNA_10637-protein ID=mRNA_10637-protein|Name=jgi.p|Nanoce1779_2|611981|organism=Nannochloropsis oceanica|type=polypeptide|length=271bp
MDAIMLVAEEHQLTVIEDAAQAFLSTYNGKYLGTIGHIGCLSFHYTKNTI
CGEGGALLVNDPKFHFQAVIVREKGTNRTEFMLGKICKYEWLCLGSSYVP
SELCAAFLLPQLHDAEEVTRRRRLICTAYTNLLAPLAAQCLLTIPKPTEA
SADGVNGAGGGPTHGNGHLFAVLFPSPEARQAAQAAMAERNIQCLTHFVP
LHLSEGGKRYGRISGSLERTVAAAMCLLRLPVWPGMHFGHVHRVVDALFQ
HFSQEAPSIRSVIDISLPKH*
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mRNA from alignment at scaffold_61:578..1548+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10637 ID=mRNA_10637|Name=jgi.p|Nanoce1779_2|611981|organism=Nannochloropsis oceanica|type=mRNA|length=971bp|location=Sequence derived from alignment at scaffold_61:578..1548+ (Nannochloropsis oceanica)
CCGTCGCTCTCCGTGGGGCCGTTCCTGTCTTCGTGGATGTGGCAGGCGGT
GACGACTTAAACCTGGATCCAGAGGCCGTCCGGCGCAGCGTGACAGACAA
AACCAAAGCGATCATCGTCGTCCACTACGGGGGCAAGGCGTGTAACATGG
ATGCCATCATGCTAGTTGCTGAGGAGCACCAGCTCACTGTCATCGAGGAT
GCCGCCCAGGCATTCTTGAGCACGTACAACGGCAAGTACCTCGGAACCAT
CGGCCATATTGGTTGCCTCTCTTTTCACTATACTAAGAACACGATTTGCG
GGGAAGGGGGCGCCCTGCTCGTCAATGACCCCAAGTTCCACTTCCAAGCG
GTAATTGTGCGCGAGAAAGGCACCAACCGCACAGAGTTCATGCTGGGGAA
AATATGCAAGTACGAGTGGCTCTGCTTGGGCTCCTCTTACGTCCCCTCAG
AGCTTTGCGCGGCGTTTCTGCTGCCCCAGCTGCACGATGCTGAGGAGGTG
ACACGGCGCCGCCGCCTCATCTGCACTGCATACACCAACCTGTTAGCCCC
GCTTGCCGCGCAATGCCTCTTGACCATCCCCAAACCTACAGAAGCCAGCG
CAGATGGTGTCAATGGGGCAGGGGGGGGTCCAACGCACGGAAATGGTCAC
CTGTTTGCGGTGCTTTTTCCGTCGCCAGAAGCGCGACAAGCAGCGCAGGC
GGCAATGGCCGAGCGAAACATCCAGTGCCTTACACACTTCGTCCCTCTAC
ACTTGTCGGAAGGCGGCAAAAGGTACGGCCGCATCTCTGGGTCTTTAGAA
CGCACTGTAGCAGCTGCGATGTGCCTCTTGCGTCTGCCCGTGTGGCCGGG
GATGCATTTTGGTCACGTCCATCGTGTTGTCGATGCCCTTTTCCAGCACT
TCAGTCAGGAGGCGCCTAGCATTCGCAGTGTCATTGATATTTCTCTACCC
AAGCACTGACAGGCTATAAGT
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Coding sequence (CDS) from alignment at scaffold_61:578..1548+

>mRNA_10637 ID=mRNA_10637|Name=jgi.p|Nanoce1779_2|611981|organism=Nannochloropsis oceanica|type=CDS|length=813bp|location=Sequence derived from alignment at scaffold_61:578..1548+ (Nannochloropsis oceanica)
ATGGATGCCATCATGCTAGTTGCTGAGGAGCACCAGCTCACTGTCATCGA
GGATGCCGCCCAGGCATTCTTGAGCACGTACAACGGCAAGTACCTCGGAA
CCATCGGCCATATTGGTTGCCTCTCTTTTCACTATACTAAGAACACGATT
TGCGGGGAAGGGGGCGCCCTGCTCGTCAATGACCCCAAGTTCCACTTCCA
AGCGGTAATTGTGCGCGAGAAAGGCACCAACCGCACAGAGTTCATGCTGG
GGAAAATATGCAAGTACGAGTGGCTCTGCTTGGGCTCCTCTTACGTCCCC
TCAGAGCTTTGCGCGGCGTTTCTGCTGCCCCAGCTGCACGATGCTGAGGA
GGTGACACGGCGCCGCCGCCTCATCTGCACTGCATACACCAACCTGTTAG
CCCCGCTTGCCGCGCAATGCCTCTTGACCATCCCCAAACCTACAGAAGCC
AGCGCAGATGGTGTCAATGGGGCAGGGGGGGGTCCAACGCACGGAAATGG
TCACCTGTTTGCGGTGCTTTTTCCGTCGCCAGAAGCGCGACAAGCAGCGC
AGGCGGCAATGGCCGAGCGAAACATCCAGTGCCTTACACACTTCGTCCCT
CTACACTTGTCGGAAGGCGGCAAAAGGTACGGCCGCATCTCTGGGTCTTT
AGAACGCACTGTAGCAGCTGCGATGTGCCTCTTGCGTCTGCCCGTGTGGC
CGGGGATGCATTTTGGTCACGTCCATCGTGTTGTCGATGCCCTTTTCCAG
CACTTCAGTCAGGAGGCGCCTAGCATTCGCAGTGTCATTGATATTTCTCT
ACCCAAGCACTGA
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Synonyms
Publications