jgi.p|Nanoce1779_2|612260, mRNA_10635 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|612260
Unique NamemRNA_10635
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1174
Alignment locationscaffold_62:84240..85858 +

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Properties
Property NameValue
TranscriptId612346
TrackFilteredModels2
ProteinId612260
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_62supercontigscaffold_62:84240..85858 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612260gene_10635Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612260mRNA_10635-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10635CDS_10635Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10635 ID=mRNA_10635|Name=jgi.p|Nanoce1779_2|612260|organism=Nannochloropsis oceanica|type=mRNA|length=1174bp
GGCACCGCGGCATGCGCCGCACATGCCAATATTCCCCCCGCCATCCTTTC
GCCCCTGTTCTCCCTCCCTTCCTCCCCCTCCCCTTCACTCTCTTCGTCAA
GGCAATACATGTCTTCATGACCCGCCGCCCCCGGCAGTGGCAACTCTCCC
AGTGCGGCCTCGGCACTGTACACCGGTCGGCGCCTCGCCATCCTCCTCCT
CCAGGCCCTCCTCATTCTTGCGCGGACGAGGGCGAAGACCAACAGCAAGG
CCAGCAACAGCCCAGTGAATCCCCACAGTGCCGCCGCCCACGCAAACGCG
GATTGGCACGCCGCATCGTCAAGAGAGGCGTCGTCCGTCCCCCCTGCCGC
TCGAGCATTGGCGCTAAGGCAAGACAGGGCGGGGGTGCGAGGGAGGGTGT
CGAGGAGGAGGCCTCCCACCAGGGGCCCCAGAGTGTGACCACAGGCCCAC
GTGGTGGTCCAGACGCTCGCCACAGTGTCCTCCGTCTCCAAAGCCGCCCA
TCCTAACTTTCTCTGCAGACGCCGGTGGAAGAGCGGGATGAAGGGGAGGA
AGACAAAGGTCTCCGTGATGCCCAACACCACCAACGAAGACACAATGAGC
CCCAAGCCCCCTCCATCAGTGCCGGCGCCCGCCGTGGCAGCGACGAAGTG
GGGCGCGAGGGGGGGAAAGGGACCGAGGGCCAGCATCGCGATGGACCAGA
GGCCCGCGCAGGAGACGATGACCCTCCATTCCCCGAGGCGGTGGGCCAGC
TCGGCGGCGAAGAAGGCAAAAAACGATGTACACGCCCACCTGCAACGTAA
AAAGTAGCCCCGCGATGTAGGCACTCACGCCCGTGGCTGCGACGATGTGC
TCGGCCAAAGCCGTGTCCATGAAGGAGAGACCGCCGGAGACGACGAGGAT
GATGGCCATATAGAGGGGGAGGGTGGGGGAGGCGGCAAGAGCCCTGAGGA
GCTTGCGGGTGGTGGAGGCGAAAGATTCGTACGGGGTCACGAGAGGGCGG
GGGTGCGTGGGGGAGGGAGGGGCCAGCGGCGAGGGCTGAGGCGCACAGGC
TGACGATAGGTTTCGGGCGCCTCTTAAATTTTCGGCTGTCTCGACTGCTG
CTGCTGCTGCTGCTGCCGCTGCCTCCGCATGACGAACTGTCTGCATCTCC
AACTCTACACCGTCACCATCCTGC
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protein sequence of jgi.p|Nanoce1779_2|612260

>mRNA_10635-protein ID=mRNA_10635-protein|Name=jgi.p|Nanoce1779_2|612260|organism=Nannochloropsis oceanica|type=polypeptide|length=165bp
MRRTCQYSPRHPFAPVLPPFLPLPFTLFVKAIHVFMTRRPRQWQLSQCGL
GTVHRSAPRHPPPPGPPHSCADEGEDQQQGQQQPSESPQCRRPRKRGLAR
RIVKRGVVRPPCRSSIGAKARQGGGAREGVEEEASHQGPQSVTTGPRGGP
DARHSVLRLQSRPS*
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mRNA from alignment at scaffold_62:84240..85858+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10635 ID=mRNA_10635|Name=jgi.p|Nanoce1779_2|612260|organism=Nannochloropsis oceanica|type=mRNA|length=1619bp|location=Sequence derived from alignment at scaffold_62:84240..85858+ (Nannochloropsis oceanica)
GGCACCGCGGCATGCGCCGCACATGCCAATATTCCCCCCGCCATCCTTTC
GCCCCTGTTCTCCCTCCCTTCCTCCCCCTCCCCTTCACTCTCTTCGTCAA
GGCAATACATGTCTTCATGACCCGCCGCCCCCGGCAGTGGCAACTCTCCC
AGTGCGGCCTCGGCACTGTACACCGGTCGGCGCCTCGCCATCCTCCTCCT
CCAGGCCCTCCTCATTCTTGCGCGGACGAGGGCGAAGACCAACAGCAAGG
CCAGCAACAGCCCAGTGAATCCCCACAGTGCCGCCGCCCACGCAAACGCG
GATTGGCACGCCGCATCGTCAAGAGAGGCGTCGTCCGTCCCCCCTGCCGC
TCGAGCATTGGCGCTAAGGCAAGACAGGGCGGGGGTGCGAGGGAGGGTGT
CGAGGAGGAGGCCTCCCACCAGGGGCCCCAGAGTGTGACCACAGGCCCAC
GTGGTGGTCCTGTGCGGGGGAGAGCGAGGGGTCTCAGAAAGTGAGGTGCA
CGCGAACATCACGCCGCCAACCCCTTTCCCTACTTTCCTCGCCGTGCACT
TGCCACGTGAGGTTGAACGAAATGAGAATCCTCCTTCTCTCCCTCCCTTC
CTCCCTCCCTCCCTCCTCTCTCTTCCTCCCTCCCTCTCCCCCTCTCTTAC
CAGACGCTCGCCACAGTGTCCTCCGTCTCCAAAGCCGCCCATCCTAACTT
TCTCTGCAGACGCCGGTGGAAGAGCGGGATGAAGGGGAGGAAGACAAAGG
TCTCCGTGATGCCCAACACCACCAACGAAGACACAATGAGCCCCAAGCCC
CCTCCATCAGTGCCGGCGCCCGCCGTGGCAGCGACGAAGTGGGGCGCGAG
GGGGGGAAAGGGACCGAGGGCCAGCATCGCGATGGACCAGAGGCCCGCGC
AGGAGACGATGACCCTCCATTCCCCGAGGCGGTGGGCCAGCTCGGCGGCG
AAGAAGGCAAAAAACGATGTACACGCCCACCTTGAGGGGGTAGGAAAAGA
GAGGAGGGAGGAAGAGCAGAAAGGAAGGGAGGGTGGTGTGAAGACGGAAG
GGAAGAGTGGCTCCGGGGGATGCAAAAACTGTCACGCGCGCAAGACTGAA
CAACCAAGGCCTTCCTTTCCGGCGGCGTGTGCTCGGATTGTCTATTCCCT
ACCTCCCTTCCGCCCTCCCGCCCTTTCCCCCCCCTCTCCCTTCTGCCCTC
CCGCCCTTCTTCCCCCCTCTCCTTCTTTCTTCACCTGCAACGTAAAAAGT
AGCCCCGCGATGTAGGCACTCACGCCCGTGGCTGCGACGATGTGCTCGGC
CAAAGCCGTGTCCATGAAGGAGAGACCGCCGGAGACGACGAGGATGATGG
CCATATAGAGGGGGAGGGTGGGGGAGGCGGCAAGAGCCCTGAGGAGCTTG
CGGGTGGTGGAGGCGAAAGATTCGTACGGGGTCACGAGAGGGCGGGGGTG
CGTGGGGGAGGGAGGGGCCAGCGGCGAGGGCTGAGGCGCACAGGCTGACG
ATAGGTTTCGGGCGCCTCTTAAATTTTCGGCTGTCTCGACTGCTGCTGCT
GCTGCTGCTGCCGCTGCCTCCGCATGACGAACTGTCTGCATCTCCAACTC
TACACCGTCACCATCCTGC
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Coding sequence (CDS) from alignment at scaffold_62:84240..85858+

>mRNA_10635 ID=mRNA_10635|Name=jgi.p|Nanoce1779_2|612260|organism=Nannochloropsis oceanica|type=CDS|length=990bp|location=Sequence derived from alignment at scaffold_62:84240..85858+ (Nannochloropsis oceanica)
ATGCGCCGCACATGCCAATATTCCCCCCGCCATCCTTTCGCCCCTGTTCT
CCCTCCCTTCCTCCCCCTCCCCTTCACTCTCTTCGTCAAGGCAATACATG
TCTTCATGACCCGCCGCCCCCGGCAGTGGCAACTCTCCCAGTGCGGCCTC
GGCACTGTACACCGGTCGGCGCCTCGCCATCCTCCTCCTCCAGGCCCTCC
TCATTCTTGCGCGGACGAGGGCGAAGACCAACAGCAAGGCCAGCAACAGC
CCAGTGAATCCCCACAGTGCCGCCGCCCACGCAAACGCGGATTGGCACGC
CGCATCGTCAAGAGAGGCGTCGTCCGTCCCCCCTGCCGCTCGAGCATTGG
CGCTAAGGCAAGACAGGGCGGGGGTGCGAGGGAGGGTGTCGAGGAGGAGG
CCTCCCACCAGGGGCCCCAGAGTGTGACCACAGGCCCACGTGGTGGTCCA
GACGCTCGCCACAGTGTCCTCCGTCTCCAAAGCCGCCCATCCTAAATGCG
CCGCACATGCCAATATTCCCCCCGCCATCCTTTCGCCCCTGTTCTCCCTC
CCTTCCTCCCCCTCCCCTTCACTCTCTTCGTCAAGGCAATACATGTCTTC
ATGACCCGCCGCCCCCGGCAGTGGCAACTCTCCCAGTGCGGCCTCGGCAC
TGTACACCGGTCGGCGCCTCGCCATCCTCCTCCTCCAGGCCCTCCTCATT
CTTGCGCGGACGAGGGCGAAGACCAACAGCAAGGCCAGCAACAGCCCAGT
GAATCCCCACAGTGCCGCCGCCCACGCAAACGCGGATTGGCACGCCGCAT
CGTCAAGAGAGGCGTCGTCCGTCCCCCCTGCCGCTCGAGCATTGGCGCTA
AGGCAAGACAGGGCGGGGGTGCGAGGGAGGGTGTCGAGGAGGAGGCCTCC
CACCAGGGGCCCCAGAGTGTGACCACAGGCCCACGTGGTGGTCCAGACGC
TCGCCACAGTGTCCTCCGTCTCCAAAGCCGCCCATCCTAA
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Synonyms
Publications