jgi.p|Nanoce1779_2|612245, mRNA_10632 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|612245
Unique NamemRNA_10632
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1208
Alignment locationscaffold_62:75705..76912 +

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Properties
Property NameValue
TranscriptId612331
TrackFilteredModels2
ProteinId612245
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_62supercontigscaffold_62:75705..76912 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612245gene_10632Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612245mRNA_10632-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10632CDS_10632Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10632 ID=mRNA_10632|Name=jgi.p|Nanoce1779_2|612245|organism=Nannochloropsis oceanica|type=mRNA|length=1208bp
CTCCGACGCCCTGCCTCCTTCTCCTCAGCTTCCTGTATCCACGCAACCCC
GCTGTCCTCCCTCCCCCCCTCCTTTCCCCCTTCTCTCCTCCATCGAAACC
CACCGAGACCCCCACGCCCTGGACTGGCAACAAGCCGAGGCCCGAGAGGA
GGACAGGGCGAAGGAGGCAAGGGCAGCCGCCGCCTATCTCTCCCTCCACC
CCGTCCTCCGCCTCCACCTCACCCTGGCACTGTGCGAGAGTCTTCTTGAC
GAGGAGCTGAAGGAGGGTAAGGGTGGGAGGGAGGGAGGGCTGGTGGCTGC
AATGGAGGGGGTGGAGGCGGCCGACTTGAGAGGGGAGGAGGTAGGGAGGG
ACAGCAGGGGCAGGAGCTACTACGTCTTCCCGCAATTCTACGAAGACTGC
CGCGTCTTCCGCACAGCGGCCTCGGGGGGGGCTGGAGTGACGAAGGGAGG
GAGGAAGGGGTCGACGGAGGAGAAGGGAGAGGGCAAGGGGGAGGAGGGGA
AAAAGAACGAGGAGGGGGAGGGAGGGGGAGGGGGAGAGGGACAGGAGGAA
GCGAAGGGTGAGTCGCCCGCTGCTGATCCTGCGGGTGCTAGTGAACCTTC
CCATCTGCAATCACAAGATCCTCCATTCTCGGTCCTTCCCCGTTTCCGAA
AAGAGAGGACGCCCGTCGGAGGGATGCTTGAGTGTGCGGCAGACTCCCTT
CCCTCCCTCCTCGCCTTGGTGGCCAAGCTGAACAAGAGCAGGTGGAGGGC
GGACGGGGAGCTGAGCGAGACGCTTGGAGCCATTGCGCAGGGCGTGATGG
AGGAGCTGGAGAAGAGGGCAGCCAAGGAGGAGGGGTTGAGGAGGAGGGAG
GAGAAGGCACGGTTGATGGAGCAGCTGCCGCGGAGAAGGAGTAGGAGATT
GGGGGAGGGGGAAGGGGAGGAGGAAAACAGGCGCCGAGGAGGAGGAGGGG
AAGAGGACGGAGAGAAAAGACTCGGAGGGAAACGAGTGGATGAGGAGGGG
AGAAATAGAGAGGGGGGTAGGGATGAAGGAGGACGGAAAGAGGAGGGCGA
TATGTACTTTTAGAGTCTGCTCACTGTGTGGAAAGAAGAGGGAGACGAGG
TCCGAGACGAAGAGTAGGTAAAATGCTGGATGACTACTCGAAGAAGAAAG
GATAACAATCAAGCAAGCATAAATAAGTGACAAAGAAAAATACAGGCCCT
CGTATGTA
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protein sequence of jgi.p|Nanoce1779_2|612245

>mRNA_10632-protein ID=mRNA_10632-protein|Name=jgi.p|Nanoce1779_2|612245|organism=Nannochloropsis oceanica|type=polypeptide|length=254bp
MEGVEAADLRGEEVGRDSRGRSYYVFPQFYEDCRVFRTAASGGAGVTKGG
RKGSTEEKGEGKGEEGKKNEEGEGGGGGEGQEEAKGESPAADPAGASEPS
HLQSQDPPFSVLPRFRKERTPVGGMLECAADSLPSLLALVAKLNKSRWRA
DGELSETLGAIAQGVMEELEKRAAKEEGLRRREEKARLMEQLPRRRSRRL
GEGEGEEENRRRGGGGEEDGEKRLGGKRVDEEGRNREGGRDEGGRKEEGD
MYF*
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mRNA from alignment at scaffold_62:75705..76912+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10632 ID=mRNA_10632|Name=jgi.p|Nanoce1779_2|612245|organism=Nannochloropsis oceanica|type=mRNA|length=1208bp|location=Sequence derived from alignment at scaffold_62:75705..76912+ (Nannochloropsis oceanica)
CTCCGACGCCCTGCCTCCTTCTCCTCAGCTTCCTGTATCCACGCAACCCC
GCTGTCCTCCCTCCCCCCCTCCTTTCCCCCTTCTCTCCTCCATCGAAACC
CACCGAGACCCCCACGCCCTGGACTGGCAACAAGCCGAGGCCCGAGAGGA
GGACAGGGCGAAGGAGGCAAGGGCAGCCGCCGCCTATCTCTCCCTCCACC
CCGTCCTCCGCCTCCACCTCACCCTGGCACTGTGCGAGAGTCTTCTTGAC
GAGGAGCTGAAGGAGGGTAAGGGTGGGAGGGAGGGAGGGCTGGTGGCTGC
AATGGAGGGGGTGGAGGCGGCCGACTTGAGAGGGGAGGAGGTAGGGAGGG
ACAGCAGGGGCAGGAGCTACTACGTCTTCCCGCAATTCTACGAAGACTGC
CGCGTCTTCCGCACAGCGGCCTCGGGGGGGGCTGGAGTGACGAAGGGAGG
GAGGAAGGGGTCGACGGAGGAGAAGGGAGAGGGCAAGGGGGAGGAGGGGA
AAAAGAACGAGGAGGGGGAGGGAGGGGGAGGGGGAGAGGGACAGGAGGAA
GCGAAGGGTGAGTCGCCCGCTGCTGATCCTGCGGGTGCTAGTGAACCTTC
CCATCTGCAATCACAAGATCCTCCATTCTCGGTCCTTCCCCGTTTCCGAA
AAGAGAGGACGCCCGTCGGAGGGATGCTTGAGTGTGCGGCAGACTCCCTT
CCCTCCCTCCTCGCCTTGGTGGCCAAGCTGAACAAGAGCAGGTGGAGGGC
GGACGGGGAGCTGAGCGAGACGCTTGGAGCCATTGCGCAGGGCGTGATGG
AGGAGCTGGAGAAGAGGGCAGCCAAGGAGGAGGGGTTGAGGAGGAGGGAG
GAGAAGGCACGGTTGATGGAGCAGCTGCCGCGGAGAAGGAGTAGGAGATT
GGGGGAGGGGGAAGGGGAGGAGGAAAACAGGCGCCGAGGAGGAGGAGGGG
AAGAGGACGGAGAGAAAAGACTCGGAGGGAAACGAGTGGATGAGGAGGGG
AGAAATAGAGAGGGGGGTAGGGATGAAGGAGGACGGAAAGAGGAGGGCGA
TATGTACTTTTAGAGTCTGCTCACTGTGTGGAAAGAAGAGGGAGACGAGG
TCCGAGACGAAGAGTAGGTAAAATGCTGGATGACTACTCGAAGAAGAAAG
GATAACAATCAAGCAAGCATAAATAAGTGACAAAGAAAAATACAGGCCCT
CGTATGTA
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Coding sequence (CDS) from alignment at scaffold_62:75705..76912+

>mRNA_10632 ID=mRNA_10632|Name=jgi.p|Nanoce1779_2|612245|organism=Nannochloropsis oceanica|type=CDS|length=762bp|location=Sequence derived from alignment at scaffold_62:75705..76912+ (Nannochloropsis oceanica)
ATGGAGGGGGTGGAGGCGGCCGACTTGAGAGGGGAGGAGGTAGGGAGGGA
CAGCAGGGGCAGGAGCTACTACGTCTTCCCGCAATTCTACGAAGACTGCC
GCGTCTTCCGCACAGCGGCCTCGGGGGGGGCTGGAGTGACGAAGGGAGGG
AGGAAGGGGTCGACGGAGGAGAAGGGAGAGGGCAAGGGGGAGGAGGGGAA
AAAGAACGAGGAGGGGGAGGGAGGGGGAGGGGGAGAGGGACAGGAGGAAG
CGAAGGGTGAGTCGCCCGCTGCTGATCCTGCGGGTGCTAGTGAACCTTCC
CATCTGCAATCACAAGATCCTCCATTCTCGGTCCTTCCCCGTTTCCGAAA
AGAGAGGACGCCCGTCGGAGGGATGCTTGAGTGTGCGGCAGACTCCCTTC
CCTCCCTCCTCGCCTTGGTGGCCAAGCTGAACAAGAGCAGGTGGAGGGCG
GACGGGGAGCTGAGCGAGACGCTTGGAGCCATTGCGCAGGGCGTGATGGA
GGAGCTGGAGAAGAGGGCAGCCAAGGAGGAGGGGTTGAGGAGGAGGGAGG
AGAAGGCACGGTTGATGGAGCAGCTGCCGCGGAGAAGGAGTAGGAGATTG
GGGGAGGGGGAAGGGGAGGAGGAAAACAGGCGCCGAGGAGGAGGAGGGGA
AGAGGACGGAGAGAAAAGACTCGGAGGGAAACGAGTGGATGAGGAGGGGA
GAAATAGAGAGGGGGGTAGGGATGAAGGAGGACGGAAAGAGGAGGGCGAT
ATGTACTTTTAG
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Synonyms
Publications