jgi.p|Nanoce1779_2|575185, mRNA_1063 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575185
Unique NamemRNA_1063
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length790
Alignment locationscaffold_2:1129802..1130591 -

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Properties
Property NameValue
TranscriptId575271
TrackFilteredModels2
ProteinId575185
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1129802..1130591 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575185gene_1063Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575185mRNA_1063-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1063CDS_1063Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1063 ID=mRNA_1063|Name=jgi.p|Nanoce1779_2|575185|organism=Nannochloropsis oceanica|type=mRNA|length=790bp
TGGGAGGGGGGCCCGGGGGGGCAATGGCTGGGGAGGCGTCCAAATTGGGG
GCGACCGACCCGTTGACTTCATTGCGCTGGGTGTTTGACTCGATTAAACG
ATGCTTGCCGCTGTTGACTCGGAAGTCATCGGAGCTGGCGGGATTGTTTG
TGGCCTTTTTGCAGCATCAGTATTTCACGGTGTTCACGGATGATCCGGAG
GCCCTGGAACTGAAGGGGGATTTGTGCCGGTTTCTGGAGGAGCAGCAACA
GCAGCACAAGCTGCAGCAGCAGCTACAGCATTTATTGATGCCCGCACGGC
TACGGGGGTCCAAGGTGGCGCGCAGCAAGCTATTGGCCTTTTTAAAGATG
TTTGCCGTGGGTGGGGTGCCAAAGCAAGGACCGGGTCGGGCCTTGTTGCA
GCGTATTTTCGCGGGTTTCCTATCTCGGCCGGACAATGCCGTGGCGGTTG
CGGCGCTTGATTGTTTGATCAATCAGACGTTACCTTACTTGACACCGTAT
GCCGCGACGTGCAAGGCTTTGCTGGACGATATCACTCTTCGTGATGAGCT
GGTGCGGTTCAGCCTGGCCACTGACATTCAACCAGAGCATCGTGCTGACT
TCATTCCACTATTGGTTCGATTATTATTTGGACGCTTCCTCGCTAAGGCT
TCAAGGGCAAGGACACGGTCGTCGAAGGATAGCCCGGCGGCACGGCGGGC
GGCGATTGTCTCGTTTTTGGCGGGATCCCAGGGCGAGAATGAGTTTAGGG
AGTTCGTGCATTTAATGCTTCGGCCTTTCTTGGTGGATGC
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protein sequence of jgi.p|Nanoce1779_2|575185

>mRNA_1063-protein ID=mRNA_1063-protein|Name=jgi.p|Nanoce1779_2|575185|organism=Nannochloropsis oceanica|type=polypeptide|length=89bp
MPRRARLCWTISLFVMSWCGSAWPLTFNQSIVLTSFHYWFDYYLDASSLR
LQGQGHGRRRIARRHGGRRLSRFWRDPRARMSLGSSCI*
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mRNA from alignment at scaffold_2:1129802..1130591-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1063 ID=mRNA_1063|Name=jgi.p|Nanoce1779_2|575185|organism=Nannochloropsis oceanica|type=mRNA|length=790bp|location=Sequence derived from alignment at scaffold_2:1129802..1130591- (Nannochloropsis oceanica)
TGGGAGGGGGGCCCGGGGGGGCAATGGCTGGGGAGGCGTCCAAATTGGGG
GCGACCGACCCGTTGACTTCATTGCGCTGGGTGTTTGACTCGATTAAACG
ATGCTTGCCGCTGTTGACTCGGAAGTCATCGGAGCTGGCGGGATTGTTTG
TGGCCTTTTTGCAGCATCAGTATTTCACGGTGTTCACGGATGATCCGGAG
GCCCTGGAACTGAAGGGGGATTTGTGCCGGTTTCTGGAGGAGCAGCAACA
GCAGCACAAGCTGCAGCAGCAGCTACAGCATTTATTGATGCCCGCACGGC
TACGGGGGTCCAAGGTGGCGCGCAGCAAGCTATTGGCCTTTTTAAAGATG
TTTGCCGTGGGTGGGGTGCCAAAGCAAGGACCGGGTCGGGCCTTGTTGCA
GCGTATTTTCGCGGGTTTCCTATCTCGGCCGGACAATGCCGTGGCGGTTG
CGGCGCTTGATTGTTTGATCAATCAGACGTTACCTTACTTGACACCGTAT
GCCGCGACGTGCAAGGCTTTGCTGGACGATATCACTCTTCGTGATGAGCT
GGTGCGGTTCAGCCTGGCCACTGACATTCAACCAGAGCATCGTGCTGACT
TCATTCCACTATTGGTTCGATTATTATTTGGACGCTTCCTCGCTAAGGCT
TCAAGGGCAAGGACACGGTCGTCGAAGGATAGCCCGGCGGCACGGCGGGC
GGCGATTGTCTCGTTTTTGGCGGGATCCCAGGGCGAGAATGAGTTTAGGG
AGTTCGTGCATTTAATGCTTCGGCCTTTCTTGGTGGATGC
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Coding sequence (CDS) from alignment at scaffold_2:1129802..1130591-

>mRNA_1063 ID=mRNA_1063|Name=jgi.p|Nanoce1779_2|575185|organism=Nannochloropsis oceanica|type=CDS|length=267bp|location=Sequence derived from alignment at scaffold_2:1129802..1130591- (Nannochloropsis oceanica)
ATGCCGCGACGTGCAAGGCTTTGCTGGACGATATCACTCTTCGTGATGAG
CTGGTGCGGTTCAGCCTGGCCACTGACATTCAACCAGAGCATCGTGCTGA
CTTCATTCCACTATTGGTTCGATTATTATTTGGACGCTTCCTCGCTAAGG
CTTCAAGGGCAAGGACACGGTCGTCGAAGGATAGCCCGGCGGCACGGCGG
GCGGCGATTGTCTCGTTTTTGGCGGGATCCCAGGGCGAGAATGAGTTTAG
GGAGTTCGTGCATTTAA
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Synonyms
Publications