jgi.p|Nanoce1779_2|612229, mRNA_10627 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|612229
Unique Name	mRNA_10627
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1500
Alignment location	scaffold_62:59736..61235 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	612315
Track	FilteredModels2
ProteinId	612229

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_62	supercontig	scaffold_62:59736..61235 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|612229	gene_10627	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|612229	mRNA_10627-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10627	CDS_10627	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_62:59736..61235+
coding sequence from alignment at scaffold_62:59736..61235+

mRNA sequence

>mRNA_10627 ID=mRNA_10627|Name=jgi.p|Nanoce1779_2|612229|organism=Nannochloropsis oceanica|type=mRNA|length=1500bp
GGGAGGGAGGGTGGGTGGGAGAGAGGGAGAGGGAGGAGCAAGAGGGAGAG
GACGAGGGATGGATTTGGGTGAAGTGGATGTGAAAGAGCAGGTGCAGCGA
TGGGCGGAGCTAGTGGGGCGCGATGGCAAAGAGGAGGGAGGAGGAAGAGA
AGTGGAAATGAAGCGGACAAAGGAGGAGAAGAGAATGAAGAGAAAAGCGG
TTGTGGAGGTGGTGCTAATCGATGATGACGATGATTGAGGAGTTAGATAA
GAGGACGGATGTGGATATGTACAGAAAATAGAAAATGAATAACCTTCCCT
GCTGGGCCCATCTTCACAGCAGCGAGGATTACTTTTTCGTGCCATGCCAC
GCGCCTCGCTTAGTTGTAATGTATCTGCGGCATGGCCTTCACTTTCATTC
ATCTCTGGCCTGTCTCTGCTAAGAAACGATCGAGATTATTGCCTGGGCCT
GTCCGAAACCAACAGCAGTGTTGACCTCCTCTCTCCTCGCTTCAGAGTCT
GGATGCGGATCATCCAGGCATGATGATTAACGTCAACATCTCAAGCAGCC
CTTCCATCAACACGACACATACTTTCCTCTCTCAAGCAAGCACAGTCATC
CACAAGCCACTACGGCGGATATCCACCGCAACAATGGAACGACAACGATC
AACGGCAGCCGCAGGGCATTTCTCCCTTGGTCTTCCGCTCCTCCTCGTCG
TCGTCCTTCTTCTTCCCATCACCACCTTGGCCTGGCAGCCACGCGTCAGC
CCATCCATGCAGCAGGAACCGTCCTCCAAGCGCCGTGCTGCCTTGCAAAG
AAGAGAAGACTCCCTCTTCCACCAGACCGCTGGGTTTGCTAGTGCTTTTT
TTCTCCTTTCATCCCCGTCCTTTGCCCTGCCTACGCCCGTCTCGGCAGCC
GAGGACAAGACTGCGGAGATTAAGGAGGCAAGGGACAAGCTTCTGGTCGA
GTTGGAGGAGGGAAAGAATGTCAACAGGTTAGAAACAGCCATTCAGAATG
CGGATTGGGACACTTTGAAGCAGGTAGGGAGGGGAAAGGGGGGAGGAAAG
GAGGAAAGGAGGGAGGGAGGCGAGGAAGCAGGAAGAAGTTGGGGTTTATG
GGTGTATATACATGTATATTTAACGGGAGAAGGAGTGGCTGTCAAGCGAG
GAAAATTGAGATGTGCAAATGGACAGACGTGCAGAGAGGCTTGTGTATAC
CTCTATCCTTCATTGAGCTTATTCCTTCCCTTCTTTCTCCCTGCCCTCTC
TCCTCCAGGTTTCAAAACAATTTGACGCCTATCTCCGGGGGGACCTGATG
GGCACGGCCCGAAAGGGTGCCCTTGACAAGAAGGCCGCCAATTCTATTCG
AGAGGCCACGATGTACAGCCTCATAAAAGTGTGTTGTTCCTCCCTCCCTT
ATCCCGTTCCCTCCTTTCTATCTTTCCTCCCTCCCTCCCTCCCTCTTCTT
CCTTCTTTATTTACCTCCTCCCCCTGTTTTTCCATCCTCGCCATTGTTTC

protein sequence of jgi.p|Nanoce1779_2|612229

>mRNA_10627-protein ID=mRNA_10627-protein|Name=jgi.p|Nanoce1779_2|612229|organism=Nannochloropsis oceanica|type=polypeptide|length=252bp
MMINVNISSSPSINTTHTFLSQASTVIHKPLRRISTATMERQRSTAAAGH
FSLGLPLLLVVVLLLPITTLAWQPRVSPSMQQEPSSKRRAALQRREDSLF
HQTAGFASAFFLLSSPSFALPTPVSAAEDKTAEIKEARDKLLVELEEGKN
VNRLETAIQNADWDTLKQVGRGKGGGKEERREGGEEAGRSWGLWVYIHVY
LTGEGVAVKRGKLRCANGQTCREACVYLYPSLSLFLPFFLPALSPPGFKT
I*

mRNA from alignment at scaffold_62:59736..61235+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10627 ID=mRNA_10627|Name=jgi.p|Nanoce1779_2|612229|organism=Nannochloropsis oceanica|type=mRNA|length=1500bp|location=Sequence derived from alignment at scaffold_62:59736..61235+ (Nannochloropsis oceanica)
GGGAGGGAGGGTGGGTGGGAGAGAGGGAGAGGGAGGAGCAAGAGGGAGAG
GACGAGGGATGGATTTGGGTGAAGTGGATGTGAAAGAGCAGGTGCAGCGA
TGGGCGGAGCTAGTGGGGCGCGATGGCAAAGAGGAGGGAGGAGGAAGAGA
AGTGGAAATGAAGCGGACAAAGGAGGAGAAGAGAATGAAGAGAAAAGCGG
TTGTGGAGGTGGTGCTAATCGATGATGACGATGATTGAGGAGTTAGATAA
GAGGACGGATGTGGATATGTACAGAAAATAGAAAATGAATAACCTTCCCT
GCTGGGCCCATCTTCACAGCAGCGAGGATTACTTTTTCGTGCCATGCCAC
GCGCCTCGCTTAGTTGTAATGTATCTGCGGCATGGCCTTCACTTTCATTC
ATCTCTGGCCTGTCTCTGCTAAGAAACGATCGAGATTATTGCCTGGGCCT
GTCCGAAACCAACAGCAGTGTTGACCTCCTCTCTCCTCGCTTCAGAGTCT
GGATGCGGATCATCCAGGCATGATGATTAACGTCAACATCTCAAGCAGCC
CTTCCATCAACACGACACATACTTTCCTCTCTCAAGCAAGCACAGTCATC
CACAAGCCACTACGGCGGATATCCACCGCAACAATGGAACGACAACGATC
AACGGCAGCCGCAGGGCATTTCTCCCTTGGTCTTCCGCTCCTCCTCGTCG
TCGTCCTTCTTCTTCCCATCACCACCTTGGCCTGGCAGCCACGCGTCAGC
CCATCCATGCAGCAGGAACCGTCCTCCAAGCGCCGTGCTGCCTTGCAAAG
AAGAGAAGACTCCCTCTTCCACCAGACCGCTGGGTTTGCTAGTGCTTTTT
TTCTCCTTTCATCCCCGTCCTTTGCCCTGCCTACGCCCGTCTCGGCAGCC
GAGGACAAGACTGCGGAGATTAAGGAGGCAAGGGACAAGCTTCTGGTCGA
GTTGGAGGAGGGAAAGAATGTCAACAGGTTAGAAACAGCCATTCAGAATG
CGGATTGGGACACTTTGAAGCAGGTAGGGAGGGGAAAGGGGGGAGGAAAG
GAGGAAAGGAGGGAGGGAGGCGAGGAAGCAGGAAGAAGTTGGGGTTTATG
GGTGTATATACATGTATATTTAACGGGAGAAGGAGTGGCTGTCAAGCGAG
GAAAATTGAGATGTGCAAATGGACAGACGTGCAGAGAGGCTTGTGTATAC
CTCTATCCTTCATTGAGCTTATTCCTTCCCTTCTTTCTCCCTGCCCTCTC
TCCTCCAGGTTTCAAAACAATTTGACGCCTATCTCCGGGGGGACCTGATG
GGCACGGCCCGAAAGGGTGCCCTTGACAAGAAGGCCGCCAATTCTATTCG
AGAGGCCACGATGTACAGCCTCATAAAAGTGTGTTGTTCCTCCCTCCCTT
ATCCCGTTCCCTCCTTTCTATCTTTCCTCCCTCCCTCCCTCCCTCTTCTT
CCTTCTTTATTTACCTCCTCCCCCTGTTTTTCCATCCTCGCCATTGTTTC

Coding sequence (CDS) from alignment at scaffold_62:59736..61235+

>mRNA_10627 ID=mRNA_10627|Name=jgi.p|Nanoce1779_2|612229|organism=Nannochloropsis oceanica|type=CDS|length=756bp|location=Sequence derived from alignment at scaffold_62:59736..61235+ (Nannochloropsis oceanica)
ATGATGATTAACGTCAACATCTCAAGCAGCCCTTCCATCAACACGACACA
TACTTTCCTCTCTCAAGCAAGCACAGTCATCCACAAGCCACTACGGCGGA
TATCCACCGCAACAATGGAACGACAACGATCAACGGCAGCCGCAGGGCAT
TTCTCCCTTGGTCTTCCGCTCCTCCTCGTCGTCGTCCTTCTTCTTCCCAT
CACCACCTTGGCCTGGCAGCCACGCGTCAGCCCATCCATGCAGCAGGAAC
CGTCCTCCAAGCGCCGTGCTGCCTTGCAAAGAAGAGAAGACTCCCTCTTC
CACCAGACCGCTGGGTTTGCTAGTGCTTTTTTTCTCCTTTCATCCCCGTC
CTTTGCCCTGCCTACGCCCGTCTCGGCAGCCGAGGACAAGACTGCGGAGA
TTAAGGAGGCAAGGGACAAGCTTCTGGTCGAGTTGGAGGAGGGAAAGAAT
GTCAACAGGTTAGAAACAGCCATTCAGAATGCGGATTGGGACACTTTGAA
GCAGGTAGGGAGGGGAAAGGGGGGAGGAAAGGAGGAAAGGAGGGAGGGAG
GCGAGGAAGCAGGAAGAAGTTGGGGTTTATGGGTGTATATACATGTATAT
TTAACGGGAGAAGGAGTGGCTGTCAAGCGAGGAAAATTGAGATGTGCAAA
TGGACAGACGTGCAGAGAGGCTTGTGTATACCTCTATCCTTCATTGAGCT
TATTCCTTCCCTTCTTTCTCCCTGCCCTCTCTCCTCCAGGTTTCAAAACA
ATTTGA

Synonyms

Publications