jgi.p|Nanoce1779_2|612222, mRNA_10625 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|612222
Unique Name	mRNA_10625
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	749
Alignment location	scaffold_62:56899..58218 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	612308
Track	FilteredModels2
ProteinId	612222

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_62	supercontig	scaffold_62:56899..58218 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|612222	gene_10625	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|612222	mRNA_10625-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10625	CDS_10625	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_62:56899..58218+
coding sequence from alignment at scaffold_62:56899..58218+

mRNA sequence

>mRNA_10625 ID=mRNA_10625|Name=jgi.p|Nanoce1779_2|612222|organism=Nannochloropsis oceanica|type=mRNA|length=749bp
AGATACAGGGCTACGTGGAGCATTTGTATTTCTATTGTTATTATTACCGG
GCAAGCCGCCGGGGCGAACGAGGATATCGTGCGGAGGGACAGGGGCGGTG
TAGGAGAAGGCGTGTACCTGTGGGCTGGCTAGCTGTACAAGGGCATGGCG
TCGCAGGTGGAGCGAATCAAGTGGGTCGAAGGCACCTCCTTCCTCGTGGA
CGGCTTTGGGTTTACCTCGCCCAAATGCTCTGCCTATTTCTTGACGCACT
ACCACAGTGATCACTACTGGGGCCTGAGACCGTCTTTCAGCAAAGGCACT
ATCTTCTGCAGCGAGATCACGGGCGCCCTTCTTATCGGCAAGCTAGGAAT
CAAGCCCCAATTTGTACACATGCTGCCCATGGAGAGACCCACCACCATAG
AGGGCGTGGAAGTCACTCTGCTAGATGCAAACCATTGCCCTGGCGCCGTC
ATGCTGGTCTTTCACCTCAAGCGTGCGAACAAGACGATCCTCCACACGGG
CGATTTCCGTGCTAGCGATGGGTTGAGGGCGAGGATGACGGCCTGGCTGC
GGGCGAGGGGGAGGAAGATCGACACTGTTTACCTGGACACCACCTACTGC
AATCACAAGGCATGCCCTCCCTCTCTCTCCCTCCCTTTCTTTCACCTTCT
TTTCCATTTCCACTGAATGACGGTATCAAGCCAACTCACCATCTCTCCCT
CCCTCTCTCCCTCCCTTCCTCCTTCCAGTACACCTTTCCTTCCCAGGCC

protein sequence of jgi.p|Nanoce1779_2|612222

>mRNA_10625-protein ID=mRNA_10625-protein|Name=jgi.p|Nanoce1779_2|612222|organism=Nannochloropsis oceanica|type=polypeptide|length=174bp
MASQVERIKWVEGTSFLVDGFGFTSPKCSAYFLTHYHSDHYWGLRPSFSK
GTIFCSEITGALLIGKLGIKPQFVHMLPMERPTTIEGVEVTLLDANHCPG
AVMLVFHLKRANKTILHTGDFRASDGLRARMTAWLRARGRKIDTVYLDTT
YCNHKACPPSLSLPFFHLLFHFH*

mRNA from alignment at scaffold_62:56899..58218+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10625 ID=mRNA_10625|Name=jgi.p|Nanoce1779_2|612222|organism=Nannochloropsis oceanica|type=mRNA|length=1320bp|location=Sequence derived from alignment at scaffold_62:56899..58218+ (Nannochloropsis oceanica)
AGATACAGGGCTACGTGGAGCATTTGTATTTCTATTGTTATTATTACCGG
GCAAGCCGCCGGGGCGAACGAGGATATCGTGCGGAGGGACAGGGGCGGTG
TAGGAGAAGGCGTGTACCTGTGGGCTGGCTAGCTGTACAAGGGCATGGCG
TCGCAGGTGGAGCGAATCAAGTGGGTCGAAGTACGTTGTTCCCGTGGTGA
TGGGTGGATAGGGTGGAGGGTTGATGAGAGGCGTGCCCAACTTTCCGTCT
CTTCCTTGCCCTGTGGCGTCACCTACCTCCTGCTTCCGATTATAGTGGAA
AATGTGCCTGTCATACCTCAATCCTTCCCGCCCTCTCTTCATTCCCTGAC
TGCTATTAGGGCACCTCCTTCCTCGTGGACGGCTTTGGGTTTACCTCGCC
CAAATGCTCTGCCTATTTCTTGACGCACTACCACAGTGATCACTACTGGG
GCCTGAGACCGTCTTTCAGCAAAGGTCAGGAGAGAAAGGGACGAAGAGGA
GACTGAGACGGGTGGATGCGAGTGTTTCTACCTACGAGATCGAGTGATAC
ATGCCTCCTTTCGCGTCGCATTGCCTTCACACCCAGCCCTCCCTCCCTCA
CTCCCTCACCCTCCTCCTTTCCTTCCTTCCTCAACCTTTCCTCCGCAGGC
ACTATCTTCTGCAGCGAGATCACGGGCGCCCTTCTTATCGGCAAGCTAGG
AATCAAGCCCCAATTTGTACACATGCTGCCCATGGAGAGACCCACCACCA
TAGAGGTACGACCTCCCTCTCTTCCAACCTCACCTGGTGGGTTGAAGCCT
TCCTCCCTCCCTCCCTTCTCCCGCCTTCCACTTTCTAGGGCGTGGAAGTC
ACTCTGCTAGATGCAAACCATTGCCCTGGCGCCGTCATGCTGGTCTTTCA
CCTCAAGCGTGGTAGGGAGGGAGGGAGGAAGGGAGGGAAGGAGGGGCAAA
GGAAGTGTTTTCACACCCTCATGCACATCCACAGCCACACCCATCCCTCT
TTTCCTCCCTTTCCCCTCCCTTCTTTTTCTCTCCCCCCCCCTCCAGCGAA
CAAGACGATCCTCCACACGGGCGATTTCCGTGCTAGCGATGGGTTGAGGG
CGAGGATGACGGCCTGGCTGCGGGCGAGGGGGAGGAAGATCGACACTGTT
TACCTGGACACCACCTACTGCAATCACAAGGCATGCCCTCCCTCTCTCTC
CCTCCCTTTCTTTCACCTTCTTTTCCATTTCCACTGAATGACGGTATCAA
GCCAACTCACCATCTCTCCCTCCCTCTCTCCCTCCCTTCCTCCTTCCAGT
ACACCTTTCCTTCCCAGGCC

Coding sequence (CDS) from alignment at scaffold_62:56899..58218+

>mRNA_10625 ID=mRNA_10625|Name=jgi.p|Nanoce1779_2|612222|organism=Nannochloropsis oceanica|type=CDS|length=2610bp|location=Sequence derived from alignment at scaffold_62:56899..58218+ (Nannochloropsis oceanica)
ATGGCGTCGCAGGTGGAGCGAATCAAGTGGGTCGAAGGCACCTCCTTCCT
CGTGGACGGCTTTGGGTTTACCTCGCCCAAATGCTCTGCCTATTTCTTGA
CGCACTACCACAGTGATCACTACTGGGGCCTGAGACCGTCTTTCAGCAAA
GGCACTATCTTCTGCAGCGAGATCACGGGCGCCCTTCTTATCGGCAAGCT
AGGAATCAAGCCCCAATTTGTACACATGCTGCCCATGGAGAGACCCACCA
CCATAGAGGGCGTGGAAGTCACTCTGCTAGATGCAAACCATTGCCCTGGC
GCCGTCATGCTGGTCTTTCACCTCAAGCGTGCGAACAAGACGATCCTCCA
CACGGGCGATTTCCGTGCTAGCGATGGGTTGAGGGCGAGGATGACGGCCT
GGCTGCGGGCGAGGGGGAGGAAGATCGACACTGTTTACCTGGACACCACC
TACTGCAATCACAAGGCATGCCCTCCCTCTCTCTCCCTCCCTTTCTTTCA
CCTTCTTTTCCATTTCCACTGAATGGCGTCGCAGGTGGAGCGAATCAAGT
GGGTCGAAGGCACCTCCTTCCTCGTGGACGGCTTTGGGTTTACCTCGCCC
AAATGCTCTGCCTATTTCTTGACGCACTACCACAGTGATCACTACTGGGG
CCTGAGACCGTCTTTCAGCAAAGGCACTATCTTCTGCAGCGAGATCACGG
GCGCCCTTCTTATCGGCAAGCTAGGAATCAAGCCCCAATTTGTACACATG
CTGCCCATGGAGAGACCCACCACCATAGAGGGCGTGGAAGTCACTCTGCT
AGATGCAAACCATTGCCCTGGCGCCGTCATGCTGGTCTTTCACCTCAAGC
GTGCGAACAAGACGATCCTCCACACGGGCGATTTCCGTGCTAGCGATGGG
TTGAGGGCGAGGATGACGGCCTGGCTGCGGGCGAGGGGGAGGAAGATCGA
CACTGTTTACCTGGACACCACCTACTGCAATCACAAGGCATGCCCTCCCT
CTCTCTCCCTCCCTTTCTTTCACCTTCTTTTCCATTTCCACTGAATGGCG
TCGCAGGTGGAGCGAATCAAGTGGGTCGAAGGCACCTCCTTCCTCGTGGA
CGGCTTTGGGTTTACCTCGCCCAAATGCTCTGCCTATTTCTTGACGCACT
ACCACAGTGATCACTACTGGGGCCTGAGACCGTCTTTCAGCAAAGGCACT
ATCTTCTGCAGCGAGATCACGGGCGCCCTTCTTATCGGCAAGCTAGGAAT
CAAGCCCCAATTTGTACACATGCTGCCCATGGAGAGACCCACCACCATAG
AGGGCGTGGAAGTCACTCTGCTAGATGCAAACCATTGCCCTGGCGCCGTC
ATGCTGGTCTTTCACCTCAAGCGTGCGAACAAGACGATCCTCCACACGGG
CGATTTCCGTGCTAGCGATGGGTTGAGGGCGAGGATGACGGCCTGGCTGC
GGGCGAGGGGGAGGAAGATCGACACTGTTTACCTGGACACCACCTACTGC
AATCACAAGGCATGCCCTCCCTCTCTCTCCCTCCCTTTCTTTCACCTTCT
TTTCCATTTCCACTGAATGGCGTCGCAGGTGGAGCGAATCAAGTGGGTCG
AAGGCACCTCCTTCCTCGTGGACGGCTTTGGGTTTACCTCGCCCAAATGC
TCTGCCTATTTCTTGACGCACTACCACAGTGATCACTACTGGGGCCTGAG
ACCGTCTTTCAGCAAAGGCACTATCTTCTGCAGCGAGATCACGGGCGCCC
TTCTTATCGGCAAGCTAGGAATCAAGCCCCAATTTGTACACATGCTGCCC
ATGGAGAGACCCACCACCATAGAGGGCGTGGAAGTCACTCTGCTAGATGC
AAACCATTGCCCTGGCGCCGTCATGCTGGTCTTTCACCTCAAGCGTGCGA
ACAAGACGATCCTCCACACGGGCGATTTCCGTGCTAGCGATGGGTTGAGG
GCGAGGATGACGGCCTGGCTGCGGGCGAGGGGGAGGAAGATCGACACTGT
TTACCTGGACACCACCTACTGCAATCACAAGGCATGCCCTCCCTCTCTCT
CCCTCCCTTTCTTTCACCTTCTTTTCCATTTCCACTGAATGGCGTCGCAG
GTGGAGCGAATCAAGTGGGTCGAAGGCACCTCCTTCCTCGTGGACGGCTT
TGGGTTTACCTCGCCCAAATGCTCTGCCTATTTCTTGACGCACTACCACA
GTGATCACTACTGGGGCCTGAGACCGTCTTTCAGCAAAGGCACTATCTTC
TGCAGCGAGATCACGGGCGCCCTTCTTATCGGCAAGCTAGGAATCAAGCC
CCAATTTGTACACATGCTGCCCATGGAGAGACCCACCACCATAGAGGGCG
TGGAAGTCACTCTGCTAGATGCAAACCATTGCCCTGGCGCCGTCATGCTG
GTCTTTCACCTCAAGCGTGCGAACAAGACGATCCTCCACACGGGCGATTT
CCGTGCTAGCGATGGGTTGAGGGCGAGGATGACGGCCTGGCTGCGGGCGA
GGGGGAGGAAGATCGACACTGTTTACCTGGACACCACCTACTGCAATCAC
AAGGCATGCCCTCCCTCTCTCTCCCTCCCTTTCTTTCACCTTCTTTTCCA
TTTCCACTGA

Synonyms

Publications