jgi.p|Nanoce1779_2|612219, mRNA_10624 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|612219
Unique NamemRNA_10624
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length400
Alignment locationscaffold_62:56255..56654 -

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Properties
Property NameValue
TranscriptId612305
TrackFilteredModels2
ProteinId612219
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_62supercontigscaffold_62:56255..56654 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612219gene_10624Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612219mRNA_10624-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10624CDS_10624Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10624 ID=mRNA_10624|Name=jgi.p|Nanoce1779_2|612219|organism=Nannochloropsis oceanica|type=mRNA|length=400bp
CAACAGCAACAAAGCGGCCTGGATGTACAGCCACATTTACACTTTTGGCT
CCTCGAGACAAGGGAGGGCTGGAAGACGAGATGGCGAGGCTTTTGTTCTC
ACGGAAGAGATAGGCGCATGCTTCTTTTCGTGCTGGGCCTCCTCCTTCTC
CTCTTCCTCCTCCGCGGCCTCCTCCCAGGCCTTTGGCTTAAATGTGCCCG
AGGGAGCCTGCGCGATTTCCTTGTCTGCACACTCGCGACTATGAGGTGCC
CCTCACCATTCATGTATCTCGCCCTAAGTAACGAACGCCTCGCTTCCTCC
CCCTCGTCCCTCACATGCAACAGACACACGAAGGAAACCGCGAGTTGCAG
AGCTACTCATCCAATCAATAATCACACCACCACCGCCGTCTAGCCATCGA
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protein sequence of jgi.p|Nanoce1779_2|612219

>mRNA_10624-protein ID=mRNA_10624-protein|Name=jgi.p|Nanoce1779_2|612219|organism=Nannochloropsis oceanica|type=polypeptide|length=92bp
MLLFVLGLLLLLFLLRGLLPGLWLKCARGSLRDFLVCTLATMRCPSPFMY
LALSNERLASSPSSLTCNRHTKETASCRATHPINNHTTTAV*
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mRNA from alignment at scaffold_62:56255..56654-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10624 ID=mRNA_10624|Name=jgi.p|Nanoce1779_2|612219|organism=Nannochloropsis oceanica|type=mRNA|length=400bp|location=Sequence derived from alignment at scaffold_62:56255..56654- (Nannochloropsis oceanica)
CAACAGCAACAAAGCGGCCTGGATGTACAGCCACATTTACACTTTTGGCT
CCTCGAGACAAGGGAGGGCTGGAAGACGAGATGGCGAGGCTTTTGTTCTC
ACGGAAGAGATAGGCGCATGCTTCTTTTCGTGCTGGGCCTCCTCCTTCTC
CTCTTCCTCCTCCGCGGCCTCCTCCCAGGCCTTTGGCTTAAATGTGCCCG
AGGGAGCCTGCGCGATTTCCTTGTCTGCACACTCGCGACTATGAGGTGCC
CCTCACCATTCATGTATCTCGCCCTAAGTAACGAACGCCTCGCTTCCTCC
CCCTCGTCCCTCACATGCAACAGACACACGAAGGAAACCGCGAGTTGCAG
AGCTACTCATCCAATCAATAATCACACCACCACCGCCGTCTAGCCATCGA
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Coding sequence (CDS) from alignment at scaffold_62:56255..56654-

>mRNA_10624 ID=mRNA_10624|Name=jgi.p|Nanoce1779_2|612219|organism=Nannochloropsis oceanica|type=CDS|length=276bp|location=Sequence derived from alignment at scaffold_62:56255..56654- (Nannochloropsis oceanica)
ATGCTTCTTTTCGTGCTGGGCCTCCTCCTTCTCCTCTTCCTCCTCCGCGG
CCTCCTCCCAGGCCTTTGGCTTAAATGTGCCCGAGGGAGCCTGCGCGATT
TCCTTGTCTGCACACTCGCGACTATGAGGTGCCCCTCACCATTCATGTAT
CTCGCCCTAAGTAACGAACGCCTCGCTTCCTCCCCCTCGTCCCTCACATG
CAACAGACACACGAAGGAAACCGCGAGTTGCAGAGCTACTCATCCAATCA
ATAATCACACCACCACCGCCGTCTAG
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Synonyms
Publications