jgi.p|Nanoce1779_2|612216, mRNA_10623 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|612216
Unique NamemRNA_10623
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1216
Alignment locationscaffold_62:53762..55297 -

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Properties
Property NameValue
TranscriptId612302
TrackFilteredModels2
ProteinId612216
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_62supercontigscaffold_62:53762..55297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612216gene_10623Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612216mRNA_10623-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10623CDS_10623Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10623 ID=mRNA_10623|Name=jgi.p|Nanoce1779_2|612216|organism=Nannochloropsis oceanica|type=mRNA|length=1216bp
CATCACTCTCCCTTCTACTCGCACCCTCCCTCCCTCCATCCCTCCCTCCA
TCCCTCCCCCTACCAACCCCATCCCTACGCGCTCCACCACAACCCCTACC
TGCATGGAGCAGCAGCAGCAGCAGCAGGAGGAGGGAGCAGTCACTCCCAC
AGCCGTTATCCTTATCCGCTCTCGCCCTACACCTACCCCCCTCAAGTCCC
AGGGCATTCCTTGCCCTCCCTCCATGCTGCCTCCTCCTCCTCCCCCCCGG
GCCCTCCCCCGCACACCTCCACCTATCCTTCCCCTTCCTCTCTCCCTCCC
CCCTCCTCGCCCTCTTCCTCCTCCGCCTCCCATTTCTTCCCTGCTCCTGC
ACCTCTTTCCTCTTCTTCCTCCTCCTGTCCTCCCGGGAACAAGCGACCTT
GGGCTGCGAGCAACAGCAGCAGCTACAGCAACAACGGTTCGGCCTCTCCT
TCCTCCCTGCCCAGTACCCGCTCCAGCAGCGTTGCATCGAACGACAGCTG
TAGCAGCAGCAGCCGCAGGCACCAGAGAGGAGGAGGAGGAGGAGAGGGAG
GAGGATGCCGCCCTTCCTATCAGCAGCAGCAGCAGCAGCAGCACTACCCC
CACCCGAATCTCAAGAAGCGGCGGCTTCCGGCGGAGGTCATCACCAAACC
AGCCTCCGCCCGGGCCCTGGAACTACTCACGACCACTCTGGCTGTGCTCA
AAGAATCCCAACTGAAGGCCGTCCCTCTAATTGCCCTAGAGAGCGAGGTC
ATCGCCCGCCTCACGGGCAGCAGCAGCAGCAGCGAGGGAGCGAGGGAGGG
GGGAAAGAAGGGAGGCAGCAACAGCACTAGCAAGGGAGAGAAGGCAAGAG
CAGTAGCAGCAGCGGGAAAGGAGGTGGTGATAACTCCAGGGGAAGTGCGC
GCGGTTGTTCGTATCCTCAAGGGCATCGGCCTCGTTTCCTTCGGCTCAGC
CCGCGCTCCTCCTCCCCCGCGGCCTCCCCCACCTACTCGCTCGCATTCCT
CCCCCGCCATCCCTCCATCCCTTTCCTCCCTCCTCTCCTCCCTCGTCCTC
CTCGAGCGGCGGCGGTGGCTCGATTCTCGTTCTCTCCTCCACCCCAAGAC
ACGGGAAGAAGGGGGCGAGGCCCACGCTGGCCCTCCCTCCCGCCCTCCCT
CCCTCCCTGATACGAGCACCAACCCGACTTGTGCAGCAGCATCTTCCTCC
TCCTCCTCCTCCTCCT
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protein sequence of jgi.p|Nanoce1779_2|612216

>mRNA_10623-protein ID=mRNA_10623-protein|Name=jgi.p|Nanoce1779_2|612216|organism=Nannochloropsis oceanica|type=polypeptide|length=204bp
MEQQQQQQEEGAVTPTAVILIRSRPTPTPLKSQGIPCPPSMLPPPPPPRA
LPRTPPPILPLPLSLPPPRPLPPPPPISSLLLHLFPLLPPPVLPGTSDLG
LRATAAATATTVRPLLPPCPVPAPAALHRTTAVAAAAAGTREEEEEEREE
DAALPISSSSSSSTTPTRISRSGGFRRRSSPNQPPPGPWNYSRPLWLCSK
NPN*
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mRNA from alignment at scaffold_62:53762..55297-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10623 ID=mRNA_10623|Name=jgi.p|Nanoce1779_2|612216|organism=Nannochloropsis oceanica|type=mRNA|length=1536bp|location=Sequence derived from alignment at scaffold_62:53762..55297- (Nannochloropsis oceanica)
CATCACTCTCCCTTCTACTCGCACCCTCCCTCCCTCCATCCCTCCCTCCA
TCCCTCCCCCTACCAACCCCATCCCTACGCGCTCCACCACAACCCCTACC
TGCATGGAGCAGCAGCAGCAGCAGCAGGAGGAGGGAGCAGTCACTCCCAC
AGCCGTTATCCTTATCCGCTCTCGCCCTACACCTACCCCCCTCAAGTCCC
AGGGCATTCCTTGCCCTCCCTCCATGCTGCCTCCTCCTCCTCCCCCCCGG
GCCCTCCCCCGCACACCTCCACCTATCCTTCCCCTTCCTCTCTCCCTCCC
CCCTCCTCGCCCTCTTCCTCCTCCGCCTCCCATTTCTTCCCTGCTCCTGC
ACCTCTTTCCTCTTCTTCCTCCTCCTGTCCTCCCGGGAACAAGCGACCTT
GGGCTGCGAGCAACAGCAGCAGCTACAGCAACAACGGTTCGGCCTCTCCT
TCCTCCCTGCCCAGTACCCGCTCCAGCAGCGTTGCATCGAACGACAGCTG
TAGCAGCAGCAGCCGCAGGCACCAGAGAGGAGGAGGAGGAGGAGAGGGAG
GAGGATGCCGCCCTTCCTATCAGCAGCAGCAGCAGCAGCAGCACTACCCC
CACCCGAATCTCAAGAAGCGGCGGCTTCCGGCGGAGGTCATCACCAAACC
AGCCTCCGCCCGGGCCCTGGAACTACTCACGACCACTCTGGCTGTGCTCA
AAGGTAGCAAACAACTTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCCCGGAAGAATCACCATGTACGAGTCCATTGCTCCCTTCACTCCTCCC
TCCCTCCCTCCCTCCTTCCCGGCGCTTGACCCTTCATCTCATTTCACATA
TTGGCATACTCATCCCTCCCTCCCTCCCTCCCTCTCTTCCAGAATCCCAA
CTGAAGGCCGTCCCTCTAATTGCCCTAGAGAGCGAGGTCATCGCCCGCCT
CACGGGCAGCAGCAGCAGCAGCGAGGGAGCGAGGGAGGGGGGAAAGAAGG
GAGGCAGCAACAGCACTAGCAAGGGAGAGAAGGCAAGAGCAGTAGCAGCA
GCGGGAAAGGAGGTGGTGATAACTCCAGGGGAAGTGCGGTAAGGAGGGAG
GGGAAGGGAGGGAGAGAAGGGAGGGAGGGAGAGATCGGAAGCGACAAGGT
GGACGTGTTTACAATCCTTTTTTAACAATACCTTTTCTCATACACTTCGC
TTCCCCCCCACTCCCTCAGCGCGGTTGTTCGTATCCTCAAGGGCATCGGC
CTCGTTTCCTTCGGCTCAGCCCGCGCTCCTCCTCCCCCGCGGCCTCCCCC
ACCTACTCGCTCGCATTCCTCCCCCGCCATCCCTCCATCCCTTTCCTCCC
TCCTCTCCTCCCTCGTCCTCCTCGAGCGGCGGCGGTGGCTCGATTCTCGT
TCTCTCCTCCACCCCAAGACACGGGAAGAAGGGGGCGAGGCCCACGCTGG
CCCTCCCTCCCGCCCTCCCTCCCTCCCTGATACGAGCACCAACCCGACTT
GTGCAGCAGCATCTTCCTCCTCCTCCTCCTCCTCCT
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Coding sequence (CDS) from alignment at scaffold_62:53762..55297-

>mRNA_10623 ID=mRNA_10623|Name=jgi.p|Nanoce1779_2|612216|organism=Nannochloropsis oceanica|type=CDS|length=1224bp|location=Sequence derived from alignment at scaffold_62:53762..55297- (Nannochloropsis oceanica)
AATCCCAACTGAATGGAGCAGCAGCAGCAGCAGCAGGAGGAGGGAGCAGT
CACTCCCACAGCCGTTATCCTTATCCGCTCTCGCCCTACACCTACCCCCC
TCAAGTCCCAGGGCATTCCTTGCCCTCCCTCCATGCTGCCTCCTCCTCCT
CCCCCCCGGGCCCTCCCCCGCACACCTCCACCTATCCTTCCCCTTCCTCT
CTCCCTCCCCCCTCCTCGCCCTCTTCCTCCTCCGCCTCCCATTTCTTCCC
TGCTCCTGCACCTCTTTCCTCTTCTTCCTCCTCCTGTCCTCCCGGGAACA
AGCGACCTTGGGCTGCGAGCAACAGCAGCAGCTACAGCAACAACGGTTCG
GCCTCTCCTTCCTCCCTGCCCAGTACCCGCTCCAGCAGCGTTGCATCGAA
CGACAGCTGTAGCAGCAGCAGCCGCAGGCACCAGAGAGGAGGAGGAGGAG
GAGAGGGAGGAGGATGCCGCCCTTCCTATCAGCAGCAGCAGCAGCAGCAG
CACTACCCCCACCCGAATCTCAAGAAGCGGCGGCTTCCGGCGGAGGTCAT
CACCAAACCAGCCTCCGCCCGGGCCCTGGAACTACTCACGACCACTCTGG
CTGTGCTCAAAGAATCCCAACTGAATGGAGCAGCAGCAGCAGCAGCAGGA
GGAGGGAGCAGTCACTCCCACAGCCGTTATCCTTATCCGCTCTCGCCCTA
CACCTACCCCCCTCAAGTCCCAGGGCATTCCTTGCCCTCCCTCCATGCTG
CCTCCTCCTCCTCCCCCCCGGGCCCTCCCCCGCACACCTCCACCTATCCT
TCCCCTTCCTCTCTCCCTCCCCCCTCCTCGCCCTCTTCCTCCTCCGCCTC
CCATTTCTTCCCTGCTCCTGCACCTCTTTCCTCTTCTTCCTCCTCCTGTC
CTCCCGGGAACAAGCGACCTTGGGCTGCGAGCAACAGCAGCAGCTACAGC
AACAACGGTTCGGCCTCTCCTTCCTCCCTGCCCAGTACCCGCTCCAGCAG
CGTTGCATCGAACGACAGCTGTAGCAGCAGCAGCCGCAGGCACCAGAGAG
GAGGAGGAGGAGGAGAGGGAGGAGGATGCCGCCCTTCCTATCAGCAGCAG
CAGCAGCAGCAGCACTACCCCCACCCGAATCTCAAGAAGCGGCGGCTTCC
GGCGGAGGTCATCACCAAACCAGCCTCCGCCCGGGCCCTGGAACTACTCA
CGACCACTCTGGCTGTGCTCAAAG
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Synonyms
Publications