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Properties
| Property Name | Value |
|---|
| TranscriptId | 612292 |
| Track | FilteredModels2 |
| ProteinId | 612206 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_62 | supercontig | scaffold_62:45965..48229 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_10621 ID=mRNA_10621|Name=jgi.p|Nanoce1779_2|612206|organism=Nannochloropsis oceanica|type=mRNA|length=1210bp
CAACAGACCCGAGGCAAGGCACCACCACCCACAACTACACATGCCTTTTC
GCTCGAGAAAACGAAAGAGGCCAAACCTGGCCCCATATGTCTTGATGGGC
GTCCTTCTCCTCCCTTCCACCGCCGCCTTCCTCCTTCCATCCTCTCCCCT
TTCCCTTTCCCTCCCTCCCCTCCTCGCCGCCGGCCGCTCCTCCTCTCGTC
TCCAATTACAACAGGGAGAGCCGCAGCAGTCATCAACACCACCCTCATTA
AGCAGTGAAGACGCCCCTCTCTCACCCTCCAACCCTCCCGACCGCTCCTC
TTCCTTTATCTCGTCCACTGCTGCGGCCCGTTTGGAGCGCCTCCCAGACG
ACACTACGGAGCGTATCGAGGTTGTTCGTGTTCCTGAGTACGAGGAAATG
TTGGCGTGGGCCGTGGACATGGACGCACAGGTGGAGGAGCGGCGGATTGC
AGGCCTAGGCGGGCGTGTGGCCGAGCCCTCGGCGACAGCCGTAGACCTGA
CCAAGAAGAAGCCGCTGGAGGAGAAAGAGGCGCTGAAAATAAACAAAATT
GTGCAGATGCTCTCACGGCGGGTCGAGACCAAGCGCGTTTTCTTCCCTAA
CGAAATGGAAGAATTGCGAGAGGCCCTCCGGGACGTGGAAACTTTACTCA
GAGACGATGCTGAGCACCTGAAAAAGGCGCAGCAGGACGCCGCCGCTCAC
AACCAGGCGGGGCGCGCCAAGAGCCGCTTCCAAAAGCGGCGGGAGATGAT
GATTGAGGAAACGGGTGATTTTGATCCCATCTACGGGAGCAAAGAAGTGC
GTGATCAAATTTACCTTTATCTCTGGTCGCTAGTGAAACGAGATCCACGC
TATCTCGATGCACCTTCGGGGGGCGATGGTATGGAGGGAGGAGAGGAGGA
GTAGGGAGGGGGGGAGAGGGAGGGAAACGTGTACAATAGACGTAAAGGAT
GGAAAGGGGGAGAGATGAATGCACGTGAAAAGGATATGGAGAGACTTGAG
GCAAATGCCTAAAGAGGGAGCCAAGGGATATAAAGGCGGAGATAGATGAA
CTGAAGTGTGAAGAAAAGACCAGAACACGGCAGCCAGAAAACAGCAACCC
TAACATTAAGAGGAAGGCCTCGCGGACGACATACAGAGTGATGCATTGCC
GGATAGAAGAATACGATTGGGGATTTGAAAGAATACTCATGCTCTCCCTC
TCTCATTAAC back to topprotein sequence of jgi.p|Nanoce1779_2|612206 >mRNA_10621-protein ID=mRNA_10621-protein|Name=jgi.p|Nanoce1779_2|612206|organism=Nannochloropsis oceanica|type=polypeptide|length=288bp
MPFRSRKRKRPNLAPYVLMGVLLLPSTAAFLLPSSPLSLSLPPLLAAGRS
SSRLQLQQGEPQQSSTPPSLSSEDAPLSPSNPPDRSSSFISSTAAARLER
LPDDTTERIEVVRVPEYEEMLAWAVDMDAQVEERRIAGLGGRVAEPSATA
VDLTKKKPLEEKEALKINKIVQMLSRRVETKRVFFPNEMEELREALRDVE
TLLRDDAEHLKKAQQDAAAHNQAGRAKSRFQKRREMMIEETGDFDPIYGS
KEVRDQIYLYLWSLVKRDPRYLDAPSGGDGMEGGEEE* back to topmRNA from alignment at scaffold_62:45965..48229+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_10621 ID=mRNA_10621|Name=jgi.p|Nanoce1779_2|612206|organism=Nannochloropsis oceanica|type=mRNA|length=2265bp|location=Sequence derived from alignment at scaffold_62:45965..48229+ (Nannochloropsis oceanica)
CAACAGACCCGAGGCAAGGCACCACCACCCACAACTACACATGCCTTTTC
GCTCGAGAAAACGAAAGAGGCCAAACCTGGCCCCATATGTCTTGATGGGC
GTCCTTCTCCTCCCTTCCACCGCCGCCTTCCTCCTTCCATCCTCTCCCCT
TTCCCTTTCCCTCCCTCCCCTCCTCGCCGCCGGCCGCTCCTCCTCTCGTC
TCCAATTACAACAGGGAGAGCCGCAGCAGTCATCAACACCACCCTCATTA
AGCAGTGAAGACGCCCCTCTCTCACCCTCCAACCCTCCCGACCGCTCCTC
TTCCTTTATCTCGTCCACTGCTGCGGCCCGTTTGGAGCGCCTCCCAGACG
ACACTACGGAGCGTATCGAGGTTGTTCGTGTTCCTGAGTACGAGGGTGCG
TCGCTAATTGTGCATTCCCTGCTCACGGTAGCTCTTCTTCTATCTCCTCG
TGCTCTCTATTTTCCGTTCTCTTGTCCCGCTCGTTCACACCCTCTTCTAT
ATGACAAATTAAAAATATCTTGAAGTGCTGTCTTAATTTCCCTTAAATCC
TTTCTCTTACCCCATCCCTCCACAGAAATGTTGGCGTGGGCCGTGGACAT
GGACGCACAGGTGGAGGAGCGGCGGATTGCAGGCCTAGGTGGGGAGGGAG
GGAGGGAGGGAGGGAAGGAGGGAGAGAGGGAGGGAGGGAGGGAGGGGTGG
GTCGGATCAACGAAGCCATGTATAAACCCTTGTGGTATCCCCTGGTCAAT
TATCACCTCACTTGATTTCCACCTTGCCTGCCCCCTGTATGGGAACATGA
TAAATTTAGATTCCTCCGCCAATACTGCCGCGTCTCGCCATGCCAAAGCC
GTCGAATGACACCAATAGTCATGTTTTCCGCCCTCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCAGGCGGGCGTGTGGCCGAGCCCTCGGCGACAGCCGT
AGACCTGACCAAGAAGAAGCCGCTGGAGGAGAAAGAGGCGCTGAAAATAA
ACAAAATTGTGCAGATGCTCTCACGGTAAGCCCTCTCCCTCACTCTCCCT
CCTTCCTTCCTTCTGTCTTGCCTGTCTCTCTTGTCTCTCACGCACTGGTG
TTTCTCGTTCCCACCAAACAACAGGCGGGTCGAGACCAAGCGCGTTTTCT
TCCCTAACGAAATGGAAGAATTGCGAGAGGTTAGTTTCCCCTCTCTCCCT
CCCTCCCTCCCTTCTCACCTCCTCCTTTTCTTCCTCCGTTTATAGAGGAG
CTGTATCGCATTCGTTCACCCTCCCTCCCTCCCTCCCTCCCTTCTTTATT
CCTCTCCTCCTTCCTACACCAGGCCCTCCGGGACGTGGAAACTTTACTCA
GAGACGATGCTGAGCACCTGAAAAAGGCGCAGCAGGTGAGGGGAGGAGGG
AAGGAGGGAGAGCTTGAAGCAGACAGTTTCAAAAAGAGACAGTGGGAGAC
GGAGGGAGAGAGGAAAGGAGGGAGGAATGGTTCGAAAGAAGCTTCTCGAT
ATGACATTCAACTCGCCGTTTCTCTGTCTCTTTCTCCTTTTCCCCTCTCC
CTCCCTCAGGACGCCGCCGCTCACAACCAGGCGGGGCGCGCCAAGAGCCG
CTTCCAAAAGCGGCGGGAGATGATGATTGAGGAAACGGGTGATTTTGATC
CCATCTACGGGTAAGCATCCCCCCCCTCCCCTCCTCCTTCCTTTGCTTCT
TTCCTTCTTTCCTCCGTCCCTCCATTTCTCCCGCTTTATCCGTCTTTAAT
CCCTCTTGCACGTGTGTCAGGTCCGTGTCTTTATCTACTCCTCCCTCCCC
CCCGCCCTCCCTCCCTCCCTCCCCCACTCCCTCCCTTCCAGGAGCAAAGA
AGTGCGTGATCAAATTTACCTTTATCTCTGGTCGCTAGTGAAACGAGATC
CACGCTATCTCGATGCACCTTCGGGGGGCGATGGTATGGAGGGAGGAGAG
GAGGAGTAGGGAGGGGGGGAGAGGGAGGGAAACGTGTACAATAGACGTAA
AGGATGGAAAGGGGGAGAGATGAATGCACGTGAAAAGGATATGGAGAGAC
TTGAGGCAAATGCCTAAAGAGGGAGCCAAGGGATATAAAGGCGGAGATAG
ATGAACTGAAGTGTGAAGAAAAGACCAGAACACGGCAGCCAGAAAACAGC
AACCCTAACATTAAGAGGAAGGCCTCGCGGACGACATACAGAGTGATGCA
TTGCCGGATAGAAGAATACGATTGGGGATTTGAAAGAATACTCATGCTCT
CCCTCTCTCATTAAC back to topCoding sequence (CDS) from alignment at scaffold_62:45965..48229+ >mRNA_10621 ID=mRNA_10621|Name=jgi.p|Nanoce1779_2|612206|organism=Nannochloropsis oceanica|type=CDS|length=6048bp|location=Sequence derived from alignment at scaffold_62:45965..48229+ (Nannochloropsis oceanica)
ATGCCTTTTCGCTCGAGAAAACGAAAGAGGCCAAACCTGGCCCCATATGT
CTTGATGGGCGTCCTTCTCCTCCCTTCCACCGCCGCCTTCCTCCTTCCAT
CCTCTCCCCTTTCCCTTTCCCTCCCTCCCCTCCTCGCCGCCGGCCGCTCC
TCCTCTCGTCTCCAATTACAACAGGGAGAGCCGCAGCAGTCATCAACACC
ACCCTCATTAAGCAGTGAAGACGCCCCTCTCTCACCCTCCAACCCTCCCG
ACCGCTCCTCTTCCTTTATCTCGTCCACTGCTGCGGCCCGTTTGGAGCGC
CTCCCAGACGACACTACGGAGCGTATCGAGGTTGTTCGTGTTCCTGAGTA
CGAGGAAATGTTGGCGTGGGCCGTGGACATGGACGCACAGGTGGAGGAGC
GGCGGATTGCAGGCCTAGGCGGGCGTGTGGCCGAGCCCTCGGCGACAGCC
GTAGACCTGACCAAGAAGAAGCCGCTGGAGGAGAAAGAGGCGCTGAAAAT
AAACAAAATTGTGCAGATGCTCTCACGGCGGGTCGAGACCAAGCGCGTTT
TCTTCCCTAACGAAATGGAAGAATTGCGAGAGGCCCTCCGGGACGTGGAA
ACTTTACTCAGAGACGATGCTGAGCACCTGAAAAAGGCGCAGCAGGACGC
CGCCGCTCACAACCAGGCGGGGCGCGCCAAGAGCCGCTTCCAAAAGCGGC
GGGAGATGATGATTGAGGAAACGGGTGATTTTGATCCCATCTACGGGAGC
AAAGAAGTGCGTGATCAAATTTACCTTTATCTCTGGTCGCTAGTGAAACG
AGATCCACGCTATCTCGATGCACCTTCGGGGGGCGATGGTATGGAGGGAG
GAGAGGAGGAGTAGATGCCTTTTCGCTCGAGAAAACGAAAGAGGCCAAAC
CTGGCCCCATATGTCTTGATGGGCGTCCTTCTCCTCCCTTCCACCGCCGC
CTTCCTCCTTCCATCCTCTCCCCTTTCCCTTTCCCTCCCTCCCCTCCTCG
CCGCCGGCCGCTCCTCCTCTCGTCTCCAATTACAACAGGGAGAGCCGCAG
CAGTCATCAACACCACCCTCATTAAGCAGTGAAGACGCCCCTCTCTCACC
CTCCAACCCTCCCGACCGCTCCTCTTCCTTTATCTCGTCCACTGCTGCGG
CCCGTTTGGAGCGCCTCCCAGACGACACTACGGAGCGTATCGAGGTTGTT
CGTGTTCCTGAGTACGAGGAAATGTTGGCGTGGGCCGTGGACATGGACGC
ACAGGTGGAGGAGCGGCGGATTGCAGGCCTAGGCGGGCGTGTGGCCGAGC
CCTCGGCGACAGCCGTAGACCTGACCAAGAAGAAGCCGCTGGAGGAGAAA
GAGGCGCTGAAAATAAACAAAATTGTGCAGATGCTCTCACGGCGGGTCGA
GACCAAGCGCGTTTTCTTCCCTAACGAAATGGAAGAATTGCGAGAGGCCC
TCCGGGACGTGGAAACTTTACTCAGAGACGATGCTGAGCACCTGAAAAAG
GCGCAGCAGGACGCCGCCGCTCACAACCAGGCGGGGCGCGCCAAGAGCCG
CTTCCAAAAGCGGCGGGAGATGATGATTGAGGAAACGGGTGATTTTGATC
CCATCTACGGGAGCAAAGAAGTGCGTGATCAAATTTACCTTTATCTCTGG
TCGCTAGTGAAACGAGATCCACGCTATCTCGATGCACCTTCGGGGGGCGA
TGGTATGGAGGGAGGAGAGGAGGAGTAGATGCCTTTTCGCTCGAGAAAAC
GAAAGAGGCCAAACCTGGCCCCATATGTCTTGATGGGCGTCCTTCTCCTC
CCTTCCACCGCCGCCTTCCTCCTTCCATCCTCTCCCCTTTCCCTTTCCCT
CCCTCCCCTCCTCGCCGCCGGCCGCTCCTCCTCTCGTCTCCAATTACAAC
AGGGAGAGCCGCAGCAGTCATCAACACCACCCTCATTAAGCAGTGAAGAC
GCCCCTCTCTCACCCTCCAACCCTCCCGACCGCTCCTCTTCCTTTATCTC
GTCCACTGCTGCGGCCCGTTTGGAGCGCCTCCCAGACGACACTACGGAGC
GTATCGAGGTTGTTCGTGTTCCTGAGTACGAGGAAATGTTGGCGTGGGCC
GTGGACATGGACGCACAGGTGGAGGAGCGGCGGATTGCAGGCCTAGGCGG
GCGTGTGGCCGAGCCCTCGGCGACAGCCGTAGACCTGACCAAGAAGAAGC
CGCTGGAGGAGAAAGAGGCGCTGAAAATAAACAAAATTGTGCAGATGCTC
TCACGGCGGGTCGAGACCAAGCGCGTTTTCTTCCCTAACGAAATGGAAGA
ATTGCGAGAGGCCCTCCGGGACGTGGAAACTTTACTCAGAGACGATGCTG
AGCACCTGAAAAAGGCGCAGCAGGACGCCGCCGCTCACAACCAGGCGGGG
CGCGCCAAGAGCCGCTTCCAAAAGCGGCGGGAGATGATGATTGAGGAAAC
GGGTGATTTTGATCCCATCTACGGGAGCAAAGAAGTGCGTGATCAAATTT
ACCTTTATCTCTGGTCGCTAGTGAAACGAGATCCACGCTATCTCGATGCA
CCTTCGGGGGGCGATGGTATGGAGGGAGGAGAGGAGGAGTAGATGCCTTT
TCGCTCGAGAAAACGAAAGAGGCCAAACCTGGCCCCATATGTCTTGATGG
GCGTCCTTCTCCTCCCTTCCACCGCCGCCTTCCTCCTTCCATCCTCTCCC
CTTTCCCTTTCCCTCCCTCCCCTCCTCGCCGCCGGCCGCTCCTCCTCTCG
TCTCCAATTACAACAGGGAGAGCCGCAGCAGTCATCAACACCACCCTCAT
TAAGCAGTGAAGACGCCCCTCTCTCACCCTCCAACCCTCCCGACCGCTCC
TCTTCCTTTATCTCGTCCACTGCTGCGGCCCGTTTGGAGCGCCTCCCAGA
CGACACTACGGAGCGTATCGAGGTTGTTCGTGTTCCTGAGTACGAGGAAA
TGTTGGCGTGGGCCGTGGACATGGACGCACAGGTGGAGGAGCGGCGGATT
GCAGGCCTAGGCGGGCGTGTGGCCGAGCCCTCGGCGACAGCCGTAGACCT
GACCAAGAAGAAGCCGCTGGAGGAGAAAGAGGCGCTGAAAATAAACAAAA
TTGTGCAGATGCTCTCACGGCGGGTCGAGACCAAGCGCGTTTTCTTCCCT
AACGAAATGGAAGAATTGCGAGAGGCCCTCCGGGACGTGGAAACTTTACT
CAGAGACGATGCTGAGCACCTGAAAAAGGCGCAGCAGGACGCCGCCGCTC
ACAACCAGGCGGGGCGCGCCAAGAGCCGCTTCCAAAAGCGGCGGGAGATG
ATGATTGAGGAAACGGGTGATTTTGATCCCATCTACGGGAGCAAAGAAGT
GCGTGATCAAATTTACCTTTATCTCTGGTCGCTAGTGAAACGAGATCCAC
GCTATCTCGATGCACCTTCGGGGGGCGATGGTATGGAGGGAGGAGAGGAG
GAGTAGATGCCTTTTCGCTCGAGAAAACGAAAGAGGCCAAACCTGGCCCC
ATATGTCTTGATGGGCGTCCTTCTCCTCCCTTCCACCGCCGCCTTCCTCC
TTCCATCCTCTCCCCTTTCCCTTTCCCTCCCTCCCCTCCTCGCCGCCGGC
CGCTCCTCCTCTCGTCTCCAATTACAACAGGGAGAGCCGCAGCAGTCATC
AACACCACCCTCATTAAGCAGTGAAGACGCCCCTCTCTCACCCTCCAACC
CTCCCGACCGCTCCTCTTCCTTTATCTCGTCCACTGCTGCGGCCCGTTTG
GAGCGCCTCCCAGACGACACTACGGAGCGTATCGAGGTTGTTCGTGTTCC
TGAGTACGAGGAAATGTTGGCGTGGGCCGTGGACATGGACGCACAGGTGG
AGGAGCGGCGGATTGCAGGCCTAGGCGGGCGTGTGGCCGAGCCCTCGGCG
ACAGCCGTAGACCTGACCAAGAAGAAGCCGCTGGAGGAGAAAGAGGCGCT
GAAAATAAACAAAATTGTGCAGATGCTCTCACGGCGGGTCGAGACCAAGC
GCGTTTTCTTCCCTAACGAAATGGAAGAATTGCGAGAGGCCCTCCGGGAC
GTGGAAACTTTACTCAGAGACGATGCTGAGCACCTGAAAAAGGCGCAGCA
GGACGCCGCCGCTCACAACCAGGCGGGGCGCGCCAAGAGCCGCTTCCAAA
AGCGGCGGGAGATGATGATTGAGGAAACGGGTGATTTTGATCCCATCTAC
GGGAGCAAAGAAGTGCGTGATCAAATTTACCTTTATCTCTGGTCGCTAGT
GAAACGAGATCCACGCTATCTCGATGCACCTTCGGGGGGCGATGGTATGG
AGGGAGGAGAGGAGGAGTAGATGCCTTTTCGCTCGAGAAAACGAAAGAGG
CCAAACCTGGCCCCATATGTCTTGATGGGCGTCCTTCTCCTCCCTTCCAC
CGCCGCCTTCCTCCTTCCATCCTCTCCCCTTTCCCTTTCCCTCCCTCCCC
TCCTCGCCGCCGGCCGCTCCTCCTCTCGTCTCCAATTACAACAGGGAGAG
CCGCAGCAGTCATCAACACCACCCTCATTAAGCAGTGAAGACGCCCCTCT
CTCACCCTCCAACCCTCCCGACCGCTCCTCTTCCTTTATCTCGTCCACTG
CTGCGGCCCGTTTGGAGCGCCTCCCAGACGACACTACGGAGCGTATCGAG
GTTGTTCGTGTTCCTGAGTACGAGGAAATGTTGGCGTGGGCCGTGGACAT
GGACGCACAGGTGGAGGAGCGGCGGATTGCAGGCCTAGGCGGGCGTGTGG
CCGAGCCCTCGGCGACAGCCGTAGACCTGACCAAGAAGAAGCCGCTGGAG
GAGAAAGAGGCGCTGAAAATAAACAAAATTGTGCAGATGCTCTCACGGCG
GGTCGAGACCAAGCGCGTTTTCTTCCCTAACGAAATGGAAGAATTGCGAG
AGGCCCTCCGGGACGTGGAAACTTTACTCAGAGACGATGCTGAGCACCTG
AAAAAGGCGCAGCAGGACGCCGCCGCTCACAACCAGGCGGGGCGCGCCAA
GAGCCGCTTCCAAAAGCGGCGGGAGATGATGATTGAGGAAACGGGTGATT
TTGATCCCATCTACGGGAGCAAAGAAGTGCGTGATCAAATTTACCTTTAT
CTCTGGTCGCTAGTGAAACGAGATCCACGCTATCTCGATGCACCTTCGGG
GGGCGATGGTATGGAGGGAGGAGAGGAGGAGTAGATGCCTTTTCGCTCGA
GAAAACGAAAGAGGCCAAACCTGGCCCCATATGTCTTGATGGGCGTCCTT
CTCCTCCCTTCCACCGCCGCCTTCCTCCTTCCATCCTCTCCCCTTTCCCT
TTCCCTCCCTCCCCTCCTCGCCGCCGGCCGCTCCTCCTCTCGTCTCCAAT
TACAACAGGGAGAGCCGCAGCAGTCATCAACACCACCCTCATTAAGCAGT
GAAGACGCCCCTCTCTCACCCTCCAACCCTCCCGACCGCTCCTCTTCCTT
TATCTCGTCCACTGCTGCGGCCCGTTTGGAGCGCCTCCCAGACGACACTA
CGGAGCGTATCGAGGTTGTTCGTGTTCCTGAGTACGAGGAAATGTTGGCG
TGGGCCGTGGACATGGACGCACAGGTGGAGGAGCGGCGGATTGCAGGCCT
AGGCGGGCGTGTGGCCGAGCCCTCGGCGACAGCCGTAGACCTGACCAAGA
AGAAGCCGCTGGAGGAGAAAGAGGCGCTGAAAATAAACAAAATTGTGCAG
ATGCTCTCACGGCGGGTCGAGACCAAGCGCGTTTTCTTCCCTAACGAAAT
GGAAGAATTGCGAGAGGCCCTCCGGGACGTGGAAACTTTACTCAGAGACG
ATGCTGAGCACCTGAAAAAGGCGCAGCAGGACGCCGCCGCTCACAACCAG
GCGGGGCGCGCCAAGAGCCGCTTCCAAAAGCGGCGGGAGATGATGATTGA
GGAAACGGGTGATTTTGATCCCATCTACGGGAGCAAAGAAGTGCGTGATC
AAATTTACCTTTATCTCTGGTCGCTAGTGAAACGAGATCCACGCTATCTC
GATGCACCTTCGGGGGGCGATGGTATGGAGGGAGGAGAGGAGGAGTAG back to top
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