jgi.p|Nanoce1779_2|380300, mRNA_10619 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|380300
Unique Name	mRNA_10619
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1591
Alignment location	scaffold_62:39204..41399 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	380386
Track	FilteredModels2
ProteinId	380300

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_62	supercontig	scaffold_62:39204..41399 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|380300	gene_10619	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|380300	mRNA_10619-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10619	CDS_10619	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_62:39204..41399+
coding sequence from alignment at scaffold_62:39204..41399+

mRNA sequence

>mRNA_10619 ID=mRNA_10619|Name=jgi.p|Nanoce1779_2|380300|organism=Nannochloropsis oceanica|type=mRNA|length=1591bp
GAAGAAAAGGGAGTGTTATGCCTGAGAGGGGGACGAAGCTTGACAACGCC
TTCAACCAGCGATTCAGCGGAGGAAACGACGATTTTGGGTGAGGCCCCGC
AGACAGGGAAATGTAAAGAGCACCCATTACTGTCTACACCTAACGGAACG
GAATCTCGTTGACAAGAGACGTACAAGGAGAAATAGGAGGAGAAGGAGGA
GGAGGAGGCCGAAATAATCTCCCTGCCCTCTCTCCACACCGCCCACAGAA
TGCACCACACGGACAATGGTGACCGAGACGATGACCACCGGTACAAAGAT
GTCAAGGGAGAAAATGTCGATGACGATGAGAATGCCCCATACCGAGCGCT
CGACGAGGATGTTCGAGATTTTTGGGTCCCACGGGAGGTGAAGCGATTGA
GACATCCCATCACGGCATTGACTTTCCTAAGAGACTACGTCCAGCCTTCC
ATTCCCGTCATTTTCTCAAAAGGGAGTGGGCTCCTCGACCAATGGCAGGG
CGTGGAGAGGTGGAAGGAGTGGGAATGGGTGGTGGGAAGGGTAGGAGAGG
AGACAATAGTCTCTGTCAACGTGACCCCTGATGGGAGAGGTGACGCCATT
CTGGAGATGCGGAAGGAAATCGAGAGAAAGGTCGAAGAGGAGAAAAGGGT
AGAGAGGAAAACTCAAAATTTCAAAAGGACGGAGGGAAGGAAGGAGGGGC
GGCCTGGTTCTCCGTCCTCTCCTCCTTCCCTTCCTCCTCGTCCTCCCCCG
CACCCTCGACGTGTCTTCATCAAGCCCGAAGAACGGCGAATGGCCTTCGG
CGCTTTCGTCGACATCCTCCTCCACGGGGAAGATGAGGGCGGGAGAGAAA
GCGGGAGGGAGGAAGGGGTGTTCTACCTCAGCCAACAGAACGACAACATG
CGCGTCGACTTTCCTATGTTCCTCTCGGACGGCCAAGGCACGCGGGAGGA
AGGGGGCGAGGAAGGGCAGGTTCCCGCTGCCGGCTTCCCAATCGCCCGCC
AGGTGTTTGGTCATGCCCCGGACGCGATTAATTTGTGGATCGGTGGCCGC
AGGAGCGTCTCGTCGGTCCACAAGGATCCTTACGAAAACATGTATGCCGT
GCTCAAGGGGGAGAAGCATTTCACCCTCTTCCCTCCCTCTGACGCCGCCT
CCTTTTCTGTTGCCCAGGATCTTCTTCAAGCCACTTATCACTCCTCTCCT
TCCTCCCGCACTCTCTCCGTTTCGATCGAGGACCAGGGCAGGAGGGAGGA
TGGGGGTCGGATCGACTGGATCGACTTGGAGGCGTCGAGGGAGGGAGGGA
GGGAAGGAGGGAGGGCGTTGCACCCCCTGGAGGTGTGGGTGAAGGAGGGG
GAGGTGCTGTATTTACCTGCATTGTGGTTCCACGAGGTGACACAGACGTG
TCCAACAATAGCCGTCAACTACTGGCACGACATGGCGTTCCTAGGACCAA
AGTATGTGTATTTTAACTTCATGCAGCGCCTCGGTAGGCAGCGACAAAGA
AGGAGGGAGGGAGGGAGGGAAGGAGGGAAGGAGGGAGGGAAGGAGGGAGG
GGAATAGGATTGAAATATTGGAATATTTAAAATTATGAGTT

protein sequence of jgi.p|Nanoce1779_2|380300

>mRNA_10619-protein ID=mRNA_10619-protein|Name=jgi.p|Nanoce1779_2|380300|organism=Nannochloropsis oceanica|type=polypeptide|length=436bp
MHHTDNGDRDDDHRYKDVKGENVDDDENAPYRALDEDVRDFWVPREVKRL
RHPITALTFLRDYVQPSIPVIFSKGSGLLDQWQGVERWKEWEWVVGRVGE
ETIVSVNVTPDGRGDAILEMRKEIERKVEEEKRVERKTQNFKRTEGRKEG
RPGSPSSPPSLPPRPPPHPRRVFIKPEERRMAFGAFVDILLHGEDEGGRE
SGREEGVFYLSQQNDNMRVDFPMFLSDGQGTREEGGEEGQVPAAGFPIAR
QVFGHAPDAINLWIGGRRSVSSVHKDPYENMYAVLKGEKHFTLFPPSDAA
SFSVAQDLLQATYHSSPSSRTLSVSIEDQGRREDGGRIDWIDLEASREGG
REGGRALHPLEVWVKEGEVLYLPALWFHEVTQTCPTIAVNYWHDMAFLGP
KYVYFNFMQRLGRQRQRRREGGREGGKEGGKEGGE*

mRNA from alignment at scaffold_62:39204..41399+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10619 ID=mRNA_10619|Name=jgi.p|Nanoce1779_2|380300|organism=Nannochloropsis oceanica|type=mRNA|length=2196bp|location=Sequence derived from alignment at scaffold_62:39204..41399+ (Nannochloropsis oceanica)
GAAGAAAAGGGAGTGTTATGCCTGAGAGGGGGACGAAGCTTGACAACGCC
TTCAACCAGCGATTCAGCGGAGGAAACGACGATTTTGGGTGAGGCCCCGC
AGACAGGGAAATGTAAAGAGCACCCATTACTGTCTACACCTAACGGAACG
GAATCTCGTTGACAAGAGACGTACAAGGAGAAATAGGAGGAGAAGGAGGA
GGAGGAGGCCGAAATAATCTCCCTGCCCTCTCTCCACACCGCCCACAGAA
TGCACCACACGGACAATGGTGACCGAGACGATGACCACCGGTACAAAGAT
GTCAAGGGAGAAAATGTCGATGACGATGAGAATGCCCCATACCGAGCGCT
CGACGAGGATGTTCGAGATTTTTGGGTCCCACGGGAGGTGAAGCGATTGA
GACATCCCATCACGGCATTGACTTTCCTAAGAGTAAGTATCATCCGGCAG
GAGGTTATAAAATCAGAGTAACAAGTCAATAATTATAAAATCTCATTCCC
TCACACCCAAATGCGTTCCTCCATGTGCCAAGGTGACTCACGACACACCA
CCCTTCCTCCCTCCTTCTATCCTCTCTTTCCTCCAGGACTACGTCCAGCC
TTCCATTCCCGTCATTTTCTCAAAAGGGAGTGGGCTCCTCGACCAATGGC
AGGGCGTGGAGAGGTGGAAGGAGTGGGAATGGGTGGTGGGAAGGGTAGGA
GAGGAGACAATAGTCTCTGTCAACGTGACCCCTGATGGGAGAGGTGACGC
CATTCTGGAGATGCGGAAGGAAATCGAGAGAAAGGTCGAAGAGGAGAAAA
GGGTAGAGAGGAAAACTCAAAATTTCAAAAGGACGGAGGGAAGGAAGGAG
GGGCGGCCTGGTTCTCCGTCCTCTCCTCCTTCCCTTCCTCCTCGTCCTCC
CCCGCACCCTCGACGTGTCTTCATCAAGCCCGAAGAACGGCGAATGGCCT
TCGGCGCTTTCGTCGACATCCTCCTCCACGGGGAAGATGAGGGCGGGAGA
GAAAGCGGGAGGGAGGAAGGGGTGTTCTACCTCAGCCAACAGAACGACAA
CATGCGCGTCGACTTTCCTATGTTCCTCTCGGACGGCCAAGGCACGCGGG
AGGAAGGGGGCGAGGAAGGGCAGGTTCCCGCTGCCGGCTTCCCAATCGCC
CGCCAGGTGTTTGGTCATGCCCCGGACGCGATTAATTTGTGGATCGGTGG
CCGCAGGAGCGTCTCGTCGGTCCACAAGGATCCTTACGAAAACATGTATG
CCGTGCTCAAGGGGGAGAAGGTAGGCGGTAGGGGGCTTCCCTCCCTCCCT
GCCCTCCCTCCCTCCCTCCCTCCCTTTCGTCTACGATTTCCTCGTTGTTT
TCTCATTCCCATTAGCATGTCACTCCCTTTCCCCCCTCCGACATGTCCTC
TCTCTGCCACCTCTCCCGGGTGCTTCCACAAGCTTCTGACCCCAGCTCAC
CCCTCCCTACTTCCCTCCCTCCCTCCCACCCTCCTTCAGCATTTCACCCT
CTTCCCTCCCTCTGACGCCGCCTCCTTTTCTGTTGCCCAGGATCTTCTTC
AAGCCACTTATCACTCCTCTCCTTCCTCCCGCACTCTCTCCGTTTCGATC
GAGGACCAGGGCAGGAGGGAGGATGGGGGTCGGATCGACTGGATCGACTT
GGAGGCGTCGAGGGAGGGAGGGAGGGAAGGAGGGAGGGCGTTGCACCCCC
TGGAGGTGTGGGTGAAGGAGGGGGAGGTGCTGTATTTACCTGCATTGTGG
TTCCACGAGGTGACACAGACGTGTCCAACAATAGCCGGTACGGAGGGAGG
GAGGGAGGGGGAGAGGGAAGGGGGGGGACCTCAATAGAAGCAAATAGAGC
ATCTTCTAGCCTCCCTCTACCATCTCTTTTTCTTTCCCTCCCTCCCCCTT
CCCTCTCCCCTCACCCCCTCCTTCCAGTCAACTACTGACACGACATGGCG
TTCCTAGGACATGAGCGTGTGTATTTTAATCATCCCTATCTCTTCCCTTC
CCTCACCCCCTCCTTCCAGTCAACTACTGGCACGACATGGCGTTCCTAGG
ACCAAAGTATGTGTATTTTAACTTCATGCAGCGCCTCGGTAGGCAGCGAC
AAAGAAGGAGGGAGGGAGGGAGGGAAGGAGGGAAGGAGGGAGGGAAGGAG
GGAGGGGAATAGGATTGAAATATTGGAATATTTAAAATTATGAGTT

Coding sequence (CDS) from alignment at scaffold_62:39204..41399+

>mRNA_10619 ID=mRNA_10619|Name=jgi.p|Nanoce1779_2|380300|organism=Nannochloropsis oceanica|type=CDS|length=5232bp|location=Sequence derived from alignment at scaffold_62:39204..41399+ (Nannochloropsis oceanica)
ATGCACCACACGGACAATGGTGACCGAGACGATGACCACCGGTACAAAGA
TGTCAAGGGAGAAAATGTCGATGACGATGAGAATGCCCCATACCGAGCGC
TCGACGAGGATGTTCGAGATTTTTGGGTCCCACGGGAGGTGAAGCGATTG
AGACATCCCATCACGGCATTGACTTTCCTAAGAGACTACGTCCAGCCTTC
CATTCCCGTCATTTTCTCAAAAGGGAGTGGGCTCCTCGACCAATGGCAGG
GCGTGGAGAGGTGGAAGGAGTGGGAATGGGTGGTGGGAAGGGTAGGAGAG
GAGACAATAGTCTCTGTCAACGTGACCCCTGATGGGAGAGGTGACGCCAT
TCTGGAGATGCGGAAGGAAATCGAGAGAAAGGTCGAAGAGGAGAAAAGGG
TAGAGAGGAAAACTCAAAATTTCAAAAGGACGGAGGGAAGGAAGGAGGGG
CGGCCTGGTTCTCCGTCCTCTCCTCCTTCCCTTCCTCCTCGTCCTCCCCC
GCACCCTCGACGTGTCTTCATCAAGCCCGAAGAACGGCGAATGGCCTTCG
GCGCTTTCGTCGACATCCTCCTCCACGGGGAAGATGAGGGCGGGAGAGAA
AGCGGGAGGGAGGAAGGGGTGTTCTACCTCAGCCAACAGAACGACAACAT
GCGCGTCGACTTTCCTATGTTCCTCTCGGACGGCCAAGGCACGCGGGAGG
AAGGGGGCGAGGAAGGGCAGGTTCCCGCTGCCGGCTTCCCAATCGCCCGC
CAGGTGTTTGGTCATGCCCCGGACGCGATTAATTTGTGGATCGGTGGCCG
CAGGAGCGTCTCGTCGGTCCACAAGGATCCTTACGAAAACATGTATGCCG
TGCTCAAGGGGGAGAAGCATTTCACCCTCTTCCCTCCCTCTGACGCCGCC
TCCTTTTCTGTTGCCCAGGATCTTCTTCAAGCCACTTATCACTCCTCTCC
TTCCTCCCGCACTCTCTCCGTTTCGATCGAGGACCAGGGCAGGAGGGAGG
ATGGGGGTCGGATCGACTGGATCGACTTGGAGGCGTCGAGGGAGGGAGGG
AGGGAAGGAGGGAGGGCGTTGCACCCCCTGGAGGTGTGGGTGAAGGAGGG
GGAGGTGCTGTATTTACCTGCATTGTGGTTCCACGAGGTGACACAGACGT
GTCCAACAATAGCCGTCAACTACTGGCACGACATGGCGTTCCTAGGACCA
AAGTATGTGTATTTTAACTTCATGCAGCGCCTCGGTAGGCAGCGACAAAG
AAGGAGGGAGGGAGGGAGGGAAGGAGGGAAGGAGGGAGGGAAGGAGGGAG
GGGAATAGATGCACCACACGGACAATGGTGACCGAGACGATGACCACCGG
TACAAAGATGTCAAGGGAGAAAATGTCGATGACGATGAGAATGCCCCATA
CCGAGCGCTCGACGAGGATGTTCGAGATTTTTGGGTCCCACGGGAGGTGA
AGCGATTGAGACATCCCATCACGGCATTGACTTTCCTAAGAGACTACGTC
CAGCCTTCCATTCCCGTCATTTTCTCAAAAGGGAGTGGGCTCCTCGACCA
ATGGCAGGGCGTGGAGAGGTGGAAGGAGTGGGAATGGGTGGTGGGAAGGG
TAGGAGAGGAGACAATAGTCTCTGTCAACGTGACCCCTGATGGGAGAGGT
GACGCCATTCTGGAGATGCGGAAGGAAATCGAGAGAAAGGTCGAAGAGGA
GAAAAGGGTAGAGAGGAAAACTCAAAATTTCAAAAGGACGGAGGGAAGGA
AGGAGGGGCGGCCTGGTTCTCCGTCCTCTCCTCCTTCCCTTCCTCCTCGT
CCTCCCCCGCACCCTCGACGTGTCTTCATCAAGCCCGAAGAACGGCGAAT
GGCCTTCGGCGCTTTCGTCGACATCCTCCTCCACGGGGAAGATGAGGGCG
GGAGAGAAAGCGGGAGGGAGGAAGGGGTGTTCTACCTCAGCCAACAGAAC
GACAACATGCGCGTCGACTTTCCTATGTTCCTCTCGGACGGCCAAGGCAC
GCGGGAGGAAGGGGGCGAGGAAGGGCAGGTTCCCGCTGCCGGCTTCCCAA
TCGCCCGCCAGGTGTTTGGTCATGCCCCGGACGCGATTAATTTGTGGATC
GGTGGCCGCAGGAGCGTCTCGTCGGTCCACAAGGATCCTTACGAAAACAT
GTATGCCGTGCTCAAGGGGGAGAAGCATTTCACCCTCTTCCCTCCCTCTG
ACGCCGCCTCCTTTTCTGTTGCCCAGGATCTTCTTCAAGCCACTTATCAC
TCCTCTCCTTCCTCCCGCACTCTCTCCGTTTCGATCGAGGACCAGGGCAG
GAGGGAGGATGGGGGTCGGATCGACTGGATCGACTTGGAGGCGTCGAGGG
AGGGAGGGAGGGAAGGAGGGAGGGCGTTGCACCCCCTGGAGGTGTGGGTG
AAGGAGGGGGAGGTGCTGTATTTACCTGCATTGTGGTTCCACGAGGTGAC
ACAGACGTGTCCAACAATAGCCGTCAACTACTGGCACGACATGGCGTTCC
TAGGACCAAAGTATGTGTATTTTAACTTCATGCAGCGCCTCGGTAGGCAG
CGACAAAGAAGGAGGGAGGGAGGGAGGGAAGGAGGGAAGGAGGGAGGGAA
GGAGGGAGGGGAATAGATGCACCACACGGACAATGGTGACCGAGACGATG
ACCACCGGTACAAAGATGTCAAGGGAGAAAATGTCGATGACGATGAGAAT
GCCCCATACCGAGCGCTCGACGAGGATGTTCGAGATTTTTGGGTCCCACG
GGAGGTGAAGCGATTGAGACATCCCATCACGGCATTGACTTTCCTAAGAG
ACTACGTCCAGCCTTCCATTCCCGTCATTTTCTCAAAAGGGAGTGGGCTC
CTCGACCAATGGCAGGGCGTGGAGAGGTGGAAGGAGTGGGAATGGGTGGT
GGGAAGGGTAGGAGAGGAGACAATAGTCTCTGTCAACGTGACCCCTGATG
GGAGAGGTGACGCCATTCTGGAGATGCGGAAGGAAATCGAGAGAAAGGTC
GAAGAGGAGAAAAGGGTAGAGAGGAAAACTCAAAATTTCAAAAGGACGGA
GGGAAGGAAGGAGGGGCGGCCTGGTTCTCCGTCCTCTCCTCCTTCCCTTC
CTCCTCGTCCTCCCCCGCACCCTCGACGTGTCTTCATCAAGCCCGAAGAA
CGGCGAATGGCCTTCGGCGCTTTCGTCGACATCCTCCTCCACGGGGAAGA
TGAGGGCGGGAGAGAAAGCGGGAGGGAGGAAGGGGTGTTCTACCTCAGCC
AACAGAACGACAACATGCGCGTCGACTTTCCTATGTTCCTCTCGGACGGC
CAAGGCACGCGGGAGGAAGGGGGCGAGGAAGGGCAGGTTCCCGCTGCCGG
CTTCCCAATCGCCCGCCAGGTGTTTGGTCATGCCCCGGACGCGATTAATT
TGTGGATCGGTGGCCGCAGGAGCGTCTCGTCGGTCCACAAGGATCCTTAC
GAAAACATGTATGCCGTGCTCAAGGGGGAGAAGCATTTCACCCTCTTCCC
TCCCTCTGACGCCGCCTCCTTTTCTGTTGCCCAGGATCTTCTTCAAGCCA
CTTATCACTCCTCTCCTTCCTCCCGCACTCTCTCCGTTTCGATCGAGGAC
CAGGGCAGGAGGGAGGATGGGGGTCGGATCGACTGGATCGACTTGGAGGC
GTCGAGGGAGGGAGGGAGGGAAGGAGGGAGGGCGTTGCACCCCCTGGAGG
TGTGGGTGAAGGAGGGGGAGGTGCTGTATTTACCTGCATTGTGGTTCCAC
GAGGTGACACAGACGTGTCCAACAATAGCCGTCAACTACTGGCACGACAT
GGCGTTCCTAGGACCAAAGTATGTGTATTTTAACTTCATGCAGCGCCTCG
GTAGGCAGCGACAAAGAAGGAGGGAGGGAGGGAGGGAAGGAGGGAAGGAG
GGAGGGAAGGAGGGAGGGGAATAGATGCACCACACGGACAATGGTGACCG
AGACGATGACCACCGGTACAAAGATGTCAAGGGAGAAAATGTCGATGACG
ATGAGAATGCCCCATACCGAGCGCTCGACGAGGATGTTCGAGATTTTTGG
GTCCCACGGGAGGTGAAGCGATTGAGACATCCCATCACGGCATTGACTTT
CCTAAGAGACTACGTCCAGCCTTCCATTCCCGTCATTTTCTCAAAAGGGA
GTGGGCTCCTCGACCAATGGCAGGGCGTGGAGAGGTGGAAGGAGTGGGAA
TGGGTGGTGGGAAGGGTAGGAGAGGAGACAATAGTCTCTGTCAACGTGAC
CCCTGATGGGAGAGGTGACGCCATTCTGGAGATGCGGAAGGAAATCGAGA
GAAAGGTCGAAGAGGAGAAAAGGGTAGAGAGGAAAACTCAAAATTTCAAA
AGGACGGAGGGAAGGAAGGAGGGGCGGCCTGGTTCTCCGTCCTCTCCTCC
TTCCCTTCCTCCTCGTCCTCCCCCGCACCCTCGACGTGTCTTCATCAAGC
CCGAAGAACGGCGAATGGCCTTCGGCGCTTTCGTCGACATCCTCCTCCAC
GGGGAAGATGAGGGCGGGAGAGAAAGCGGGAGGGAGGAAGGGGTGTTCTA
CCTCAGCCAACAGAACGACAACATGCGCGTCGACTTTCCTATGTTCCTCT
CGGACGGCCAAGGCACGCGGGAGGAAGGGGGCGAGGAAGGGCAGGTTCCC
GCTGCCGGCTTCCCAATCGCCCGCCAGGTGTTTGGTCATGCCCCGGACGC
GATTAATTTGTGGATCGGTGGCCGCAGGAGCGTCTCGTCGGTCCACAAGG
ATCCTTACGAAAACATGTATGCCGTGCTCAAGGGGGAGAAGCATTTCACC
CTCTTCCCTCCCTCTGACGCCGCCTCCTTTTCTGTTGCCCAGGATCTTCT
TCAAGCCACTTATCACTCCTCTCCTTCCTCCCGCACTCTCTCCGTTTCGA
TCGAGGACCAGGGCAGGAGGGAGGATGGGGGTCGGATCGACTGGATCGAC
TTGGAGGCGTCGAGGGAGGGAGGGAGGGAAGGAGGGAGGGCGTTGCACCC
CCTGGAGGTGTGGGTGAAGGAGGGGGAGGTGCTGTATTTACCTGCATTGT
GGTTCCACGAGGTGACACAGACGTGTCCAACAATAGCCGTCAACTACTGG
CACGACATGGCGTTCCTAGGACCAAAGTATGTGTATTTTAACTTCATGCA
GCGCCTCGGTAGGCAGCGACAAAGAAGGAGGGAGGGAGGGAGGGAAGGAG
GGAAGGAGGGAGGGAAGGAGGGAGGGGAATAG

Synonyms

Publications