jgi.p|Nanoce1779_2|380114, mRNA_10617 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|380114
Unique NamemRNA_10617
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1334
Alignment locationscaffold_62:34254..35587 +

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Properties
Property NameValue
TranscriptId380200
TrackFilteredModels2
ProteinId380114
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_62supercontigscaffold_62:34254..35587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|380114gene_10617Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|380114mRNA_10617-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10617CDS_10617Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10617 ID=mRNA_10617|Name=jgi.p|Nanoce1779_2|380114|organism=Nannochloropsis oceanica|type=mRNA|length=1334bp
CGTCGCATTTTGGAATCGTTGGGGAAATTTGGAAGCTTGCAGCTGGAAAC
TTCGTCGGGGACTGCAAATATTTTGGATTACCCTCGGCAAGAAACCATGT
GAATGTACAGTGGTTGATAGGACGCTGAAGACCGTTAAATGGAACAACAC
TTTTCGAAATTTAAGGCATTTACTTTGTCATGCTATGCACCTAAACCACA
TATGACACAGAAACATGGTGAGCGGCAACTATCATACACTTCTCACTTTC
TTTATGGTGGTCGCTCTTGCGTTCTCGCACGGCCAGCACCGACGACACAC
GCGAATGGGCACCGCGGCCATGATCTCTACGTTGGCAACTCTCGGGGCCC
TCTCGCTGCCTTTAGCCACCTGCCTCCCACCCTCCCTTGATGTCTCTATC
CAGGCCTGTAGTACCATTAACCCAGACGACTACTTTAAGAACGTCATTGC
CAAGGCTGGGAATGGTGGTCAGGCGGGCACTCTCCGCGGCAAACCTACGC
GTTTTACGCTGATCCTTGTCCCTCGCCAGATACAGCCTTCCCCGGCACTC
CAACCTTCTTTGGACCTACGCATCGACCTTTCCTCATTCCTGGACGTGAA
AACAGCCCAGATGAAGCGGCCCCAGGGCAGTTCTGCTATCACGCCAGTCA
TCGACAGAGATCTCGGAACGGTGACGTGGAACAATATTGGGGCTGCCCTC
CTGGGTGCGGGTTCCAGGAAGGCGGTGCCTCAGAAGCTCAGGTTCACTAT
TAAGGCAGTTTTGGCCAGCGACATACCTAAAGGCATCAAAATCAAGGCCT
ACTTGTTGGACGACCAGAATGTTTGCGAGGTGATGGTGGGGGAGGAGGAA
GTTCTTGTGCGTGACCCCGAGGGATTCAAGGCCATCAGGTCGGGAGAAGG
GCAGTGAGGACGAGAAAAAGTCAGGATGTGCGAGGGGAAAAGGAGGAAGA
GGAGATGGTAGATCTCGAAAAGTAGGGAGAAACCAAGCAATTTCGTTCAA
TCGAGGCGCACGGGAAGCTTCCCATGGGAAAAGCCAACACCAGAAGTGGA
AGAAATCGAAAAGAAAGGAGATGAATGAAGTACTATATGGGGATGGGGAT
GTATATTATAATTCTGTACAAGTCAAAAGGTGATGAACAGGAAGATATAG
CAGAAAACGGGGTTAAAACTTTCTGCATGGATGATCTCGATACCTGCCGA
GAAGAAAGAAGTGAAGGGTGAATCCTGCGATCGCTCTTTCGTATCCACTT
TAAGAATTTGAAAAAACAGCTCTTATCTGTTTTGCGGAAATATCCAGCAT
GTAAGGTACGTCTTGTTCTCGTTACTTATTTTTA
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protein sequence of jgi.p|Nanoce1779_2|380114

>mRNA_10617-protein ID=mRNA_10617-protein|Name=jgi.p|Nanoce1779_2|380114|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp
MVSGNYHTLLTFFMVVALAFSHGQHRRHTRMGTAAMISTLATLGALSLPL
ATCLPPSLDVSIQACSTINPDDYFKNVIAKAGNGGQAGTLRGKPTRFTLI
LVPRQIQPSPALQPSLDLRIDLSSFLDVKTAQMKRPQGSSAITPVIDRDL
GTVTWNNIGAALLGAGSRKAVPQKLRFTIKAVLASDIPKGIKIKAYLLDD
QNVCEVMVGEEEVLVRDPEGFKAIRSGEGQ*
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mRNA from alignment at scaffold_62:34254..35587+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10617 ID=mRNA_10617|Name=jgi.p|Nanoce1779_2|380114|organism=Nannochloropsis oceanica|type=mRNA|length=1334bp|location=Sequence derived from alignment at scaffold_62:34254..35587+ (Nannochloropsis oceanica)
CGTCGCATTTTGGAATCGTTGGGGAAATTTGGAAGCTTGCAGCTGGAAAC
TTCGTCGGGGACTGCAAATATTTTGGATTACCCTCGGCAAGAAACCATGT
GAATGTACAGTGGTTGATAGGACGCTGAAGACCGTTAAATGGAACAACAC
TTTTCGAAATTTAAGGCATTTACTTTGTCATGCTATGCACCTAAACCACA
TATGACACAGAAACATGGTGAGCGGCAACTATCATACACTTCTCACTTTC
TTTATGGTGGTCGCTCTTGCGTTCTCGCACGGCCAGCACCGACGACACAC
GCGAATGGGCACCGCGGCCATGATCTCTACGTTGGCAACTCTCGGGGCCC
TCTCGCTGCCTTTAGCCACCTGCCTCCCACCCTCCCTTGATGTCTCTATC
CAGGCCTGTAGTACCATTAACCCAGACGACTACTTTAAGAACGTCATTGC
CAAGGCTGGGAATGGTGGTCAGGCGGGCACTCTCCGCGGCAAACCTACGC
GTTTTACGCTGATCCTTGTCCCTCGCCAGATACAGCCTTCCCCGGCACTC
CAACCTTCTTTGGACCTACGCATCGACCTTTCCTCATTCCTGGACGTGAA
AACAGCCCAGATGAAGCGGCCCCAGGGCAGTTCTGCTATCACGCCAGTCA
TCGACAGAGATCTCGGAACGGTGACGTGGAACAATATTGGGGCTGCCCTC
CTGGGTGCGGGTTCCAGGAAGGCGGTGCCTCAGAAGCTCAGGTTCACTAT
TAAGGCAGTTTTGGCCAGCGACATACCTAAAGGCATCAAAATCAAGGCCT
ACTTGTTGGACGACCAGAATGTTTGCGAGGTGATGGTGGGGGAGGAGGAA
GTTCTTGTGCGTGACCCCGAGGGATTCAAGGCCATCAGGTCGGGAGAAGG
GCAGTGAGGACGAGAAAAAGTCAGGATGTGCGAGGGGAAAAGGAGGAAGA
GGAGATGGTAGATCTCGAAAAGTAGGGAGAAACCAAGCAATTTCGTTCAA
TCGAGGCGCACGGGAAGCTTCCCATGGGAAAAGCCAACACCAGAAGTGGA
AGAAATCGAAAAGAAAGGAGATGAATGAAGTACTATATGGGGATGGGGAT
GTATATTATAATTCTGTACAAGTCAAAAGGTGATGAACAGGAAGATATAG
CAGAAAACGGGGTTAAAACTTTCTGCATGGATGATCTCGATACCTGCCGA
GAAGAAAGAAGTGAAGGGTGAATCCTGCGATCGCTCTTTCGTATCCACTT
TAAGAATTTGAAAAAACAGCTCTTATCTGTTTTGCGGAAATATCCAGCAT
GTAAGGTACGTCTTGTTCTCGTTACTTATTTTTA
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Coding sequence (CDS) from alignment at scaffold_62:34254..35587+

>mRNA_10617 ID=mRNA_10617|Name=jgi.p|Nanoce1779_2|380114|organism=Nannochloropsis oceanica|type=CDS|length=693bp|location=Sequence derived from alignment at scaffold_62:34254..35587+ (Nannochloropsis oceanica)
ATGGTGAGCGGCAACTATCATACACTTCTCACTTTCTTTATGGTGGTCGC
TCTTGCGTTCTCGCACGGCCAGCACCGACGACACACGCGAATGGGCACCG
CGGCCATGATCTCTACGTTGGCAACTCTCGGGGCCCTCTCGCTGCCTTTA
GCCACCTGCCTCCCACCCTCCCTTGATGTCTCTATCCAGGCCTGTAGTAC
CATTAACCCAGACGACTACTTTAAGAACGTCATTGCCAAGGCTGGGAATG
GTGGTCAGGCGGGCACTCTCCGCGGCAAACCTACGCGTTTTACGCTGATC
CTTGTCCCTCGCCAGATACAGCCTTCCCCGGCACTCCAACCTTCTTTGGA
CCTACGCATCGACCTTTCCTCATTCCTGGACGTGAAAACAGCCCAGATGA
AGCGGCCCCAGGGCAGTTCTGCTATCACGCCAGTCATCGACAGAGATCTC
GGAACGGTGACGTGGAACAATATTGGGGCTGCCCTCCTGGGTGCGGGTTC
CAGGAAGGCGGTGCCTCAGAAGCTCAGGTTCACTATTAAGGCAGTTTTGG
CCAGCGACATACCTAAAGGCATCAAAATCAAGGCCTACTTGTTGGACGAC
CAGAATGTTTGCGAGGTGATGGTGGGGGAGGAGGAAGTTCTTGTGCGTGA
CCCCGAGGGATTCAAGGCCATCAGGTCGGGAGAAGGGCAGTGA
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Synonyms
Publications