jgi.p|Nanoce1779_2|612153, mRNA_10612 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|612153
Unique NamemRNA_10612
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length720
Alignment locationscaffold_62:18086..19397 -

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Properties
Property NameValue
TranscriptId612239
TrackFilteredModels2
ProteinId612153
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_62supercontigscaffold_62:18086..19397 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612153gene_10612Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612153mRNA_10612-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10612CDS_10612Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10612 ID=mRNA_10612|Name=jgi.p|Nanoce1779_2|612153|organism=Nannochloropsis oceanica|type=mRNA|length=720bp
TACCGCCGCCTAGTGTCATGAAGTGAGTGAGATGTAAAGAGAAGTTCAGG
GAATGAAAAAGAGGAAGGCGCCGCATGATGTATGTGTCGCGTTGTGGTTC
GTGTCGTATTTACATTTTCCCATACCTCTTTCCTTCCCTCCCTCCCTCTC
CTCCTCCCTCCCTTCCTCCCTACCTTGTCGGCCCAACAGGCAGTATTTAA
TGTACTTGCCCCTCGTAACCCTGACCATCCTCGTTATTGGTCCTTGCGTG
GGCCTCTCGCTCCAAGGAATGAATGCCGCCCTCCACCACATGCTCCTCGT
CCTGGCAGCCGTGTGTCCCTCCCCTTCCCCCTCCTCCTCGCACTTGCCCT
ACTACGCTTTTTTGCTCTCAGCTGCCTATTATTGGGCCAGTGGCGGCGCC
GGAACGCAGGATGATCGTGTCGCCTTCGGCCCATACGAGAGTGAAATTCG
TCAGCTGCTCTGGCGCCACGATCCTTCTCGCCTGCACTTGGTCGACTCCA
TGATAAAGGCCTACCGGTGGAAGGGAGCCAAACGCCTCCTCGAGGACCTC
CGAGAAGAGTATTCAGAGCATTCTCCCGTCATTCAAACAGACAACCGTTA
CGAATCCCGCCGTCTTTCCCGGCCCCTCTCCTCCTCCACCACTGCCTCTC
GCCGTTCCGCCCCCCGCATGCCACAGCCACCTCAACAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCA
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protein sequence of jgi.p|Nanoce1779_2|612153

>mRNA_10612-protein ID=mRNA_10612-protein|Name=jgi.p|Nanoce1779_2|612153|organism=Nannochloropsis oceanica|type=polypeptide|length=111bp
MCRVVVRVVFTFSHTSFLPSLPLLLPPFLPTLSAQQAVFNVLAPRNPDHP
RYWSLRGPLAPRNECRPPPHAPRPGSRVSLPFPLLLALALLRFFALSCLL
LGQWRRRNAG*
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mRNA from alignment at scaffold_62:18086..19397-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10612 ID=mRNA_10612|Name=jgi.p|Nanoce1779_2|612153|organism=Nannochloropsis oceanica|type=mRNA|length=1312bp|location=Sequence derived from alignment at scaffold_62:18086..19397- (Nannochloropsis oceanica)
TACCGCCGCCTAGTGTCATGAAGTGAGTGAGATGTAAAGAGAAGTTCAGG
GAATGAAAAAGAGGAAGGCGCCGCATGATGTATGTGTCGCGTTGTGGTTC
GTGTCGTATTTACATTTTCCCATACCTCTTTCCTTCCCTCCCTCCCTCTC
CTCCTCCCTCCCTTCCTCCCTACCTTGTCGGCCCAACAGGCAGTATTTAA
TGTACTTGCCCCTCGTAACCCTGACCATCCTCGTTATTGGTCCTTGCGTG
GGCCTCTCGCTCCAAGGAATGAATGCCGGTAAGGCGGAGGATGGGAGGGT
GGGAGGGCGGGAGGGAAGGAAAGTTTTACATGCTGATAGAGGTCCACGTC
CAGATCGACTCTTCTTTCTATCCCTTTGATTTAATCCCTCCATCATTCCC
TCGCTCGCTTCCTTCCCCCAGCCCTCCACCACATGCTCCTCGTCCTGGCA
GCCGTGTGTCCCTCCCCTTCCCCCTCCTCCTCGCACTTGCCCTACTACGC
TTTTTTGCTCTCAGCTGCCTATTATTGGGCCAGTGGCGGCGCCGGAACGC
AGGTTAGAATGCAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGC
TGGCTGGGGGGCTTTCGTCCCGTTCGTTGGTCGACTGTGGATGGAAGCGG
CTGAGACATCGGTAAGACACGGGAGGGAGGGAGGGAGGGCGGCAAGAAGG
ATCTCACCTGGGATTCACTGAGCGGTCTCCTTGCTCTCCTGCCTTGGTCT
CTTTACCAACAAATACCTTGGAGCCTCATCCCCCTTCCTCCCTCCCTCCC
TCGCCCCCTCCCTCTTTGGAAAACCAGGATGATCGTGTCGCCTTCGGCCC
ATACGAGAGTGAAATTCGTCAGCTGCTCTGGCGCCACGATCCTTCTCGCC
TGCACTTGGTCGACTCCATGATAAAGGCCTACCGGTGGAAGGGAGCCAAA
CGCCTCCTCGAGGTGCGTGCCTTCCCTTCCTCCCTGCCTCTCTCCCTCTC
TCCCTCTCTCCCTCCCTCCCTCCCCCCCCCCCCCCCTTCTCCCCCTCCGT
CATCTCGCCACCGCATTCAACTTTCTCGATTGCCCCACGACTCTCACGAT
CCACCTCTCGCCATTTCCCTTTCCTCCCTCCCCCAGGACCTCCGAGAAGA
GTATTCAGAGCATTCTCCCGTCATTCAAACAGACAACCGTTACGAATCCC
GCCGTCTTTCCCGGCCCCTCTCCTCCTCCACCACTGCCTCTCGCCGTTCC
GCCCCCCGCATGCCACAGCCACCTCAACAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCA
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Coding sequence (CDS) from alignment at scaffold_62:18086..19397-

>mRNA_10612 ID=mRNA_10612|Name=jgi.p|Nanoce1779_2|612153|organism=Nannochloropsis oceanica|type=CDS|length=999bp|location=Sequence derived from alignment at scaffold_62:18086..19397- (Nannochloropsis oceanica)
GATGACCCTCCACCACATGCTCCTCGTCCTGGCAGCCGTGTGTCCCTCCC
CTTCCCCCTCCTCCTCGCACTTGCCCTACTACGCTTTTTTGCTCTCAGCT
GCCTATTATTGGGCCAGTGGCGGCGCCGGAACGCAGATGTGTCGCGTTGT
GGTTCGTGTCGTATTTACATTTTCCCATACCTCTTTCCTTCCCTCCCTCC
CTCTCCTCCTCCCTCCCTTCCTCCCTACCTTGTCGGCCCAACAGGCAGTA
TTTAATGTACTTGCCCCTCGTAACCCTGACCATCCTCGTTATTGGTCCTT
GCGTGGGCCTCTCGCTCCAAGGAATGAATGCCGGATGACCCTCCACCACA
TGCTCCTCGTCCTGGCAGCCGTGTGTCCCTCCCCTTCCCCCTCCTCCTCG
CACTTGCCCTACTACGCTTTTTTGCTCTCAGCTGCCTATTATTGGGCCAG
TGGCGGCGCCGGAACGCAGATGTGTCGCGTTGTGGTTCGTGTCGTATTTA
CATTTTCCCATACCTCTTTCCTTCCCTCCCTCCCTCTCCTCCTCCCTCCC
TTCCTCCCTACCTTGTCGGCCCAACAGGCAGTATTTAATGTACTTGCCCC
TCGTAACCCTGACCATCCTCGTTATTGGTCCTTGCGTGGGCCTCTCGCTC
CAAGGAATGAATGCCGGATGACCCTCCACCACATGCTCCTCGTCCTGGCA
GCCGTGTGTCCCTCCCCTTCCCCCTCCTCCTCGCACTTGCCCTACTACGC
TTTTTTGCTCTCAGCTGCCTATTATTGGGCCAGTGGCGGCGCCGGAACGC
AGATGTGTCGCGTTGTGGTTCGTGTCGTATTTACATTTTCCCATACCTCT
TTCCTTCCCTCCCTCCCTCTCCTCCTCCCTCCCTTCCTCCCTACCTTGTC
GGCCCAACAGGCAGTATTTAATGTACTTGCCCCTCGTAACCCTGACCATC
CTCGTTATTGGTCCTTGCGTGGGCCTCTCGCTCCAAGGAATGAATGCCG
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Synonyms
Publications