jgi.p|Nanoce1779_2|612145, mRNA_10611 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|612145
Unique Name	mRNA_10611
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1195
Alignment location	scaffold_62:13758..16311 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	612231
Track	FilteredModels2
ProteinId	612145

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_62	supercontig	scaffold_62:13758..16311 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|612145	gene_10611	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|612145	mRNA_10611-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10611	CDS_10611	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_62:13758..16311+
coding sequence from alignment at scaffold_62:13758..16311+

mRNA sequence

>mRNA_10611 ID=mRNA_10611|Name=jgi.p|Nanoce1779_2|612145|organism=Nannochloropsis oceanica|type=mRNA|length=1195bp
CAGGCAGTCCACGAACCAAGCGCCCGGAAGGGAAAAAAAGGTGCCGACCG
CGGGGAGATAAACATGCAATGCTGAGCTCGCTGCCTTTCCACACCTTTCG
TCCCGTCCGTCGCATCATCACATCGTCGTTCGCCACCAACACCACCAGCA
GAGGCAGTAGTAGCGTCTGCAGGCAATTTACCACCCACCTGTCCCGTCGT
CCATCCTCGTCTACCACCAGCATGGCACCCTCACTCTTGGCGCTCGCGGC
GTCGGCGGGAAATAGCATAACACTGAGTGAATTAACGCTGCACAAGCTGC
AAGGAGCACAGCTGTTTGTCGGGAGCGGCGTGGCTTTCCTCTTCGCGGCT
CATCGCTGGCAGGTACGGATGGAAGGTAAAAATGTGGAGGAAGCCTGGAG
AGGGATGCTTCAGTCATATGTTCGAACCAAAGGTTGATGCGTGGACACCT
TCGATCAGGAATGGCGACGTGGTCTGTCGACCAGTGCAGGGGAAGGAGCC
GCCCGGGACAAGAAGAAGAAGAAGAAGAGTATGATATACACCCGCACGGG
AGATAAAGGCACGTCCAGCCTATATAATGGAGAGCGACGGCCAAAAAATG
ACGCGACCTTCGATGCATTGGGTGCAACGGACGAGCTCAACGCAGCTATT
GGCCTCGCGAAGGAGCATGCCATCACCAAGAGCGCCTTGGGAGGGCCGCT
GTGTCAGATCCAATCCCGCCTTCTGGACTTGGGGGCTGCCATCGCCACGC
CCGCGCAGACGTCGGACGACCACAAACGAGAACGGACGCGCTTCGACCCC
ACCCACGTCAAGAAGGTGGAGGAGTGGATCGACGAACTCGACGGCCGCCT
CCCTCCTCTCAAGAACTTTATCCTCCCCTCTGGAGGGCTCTGCAGTGCGC
ATCTGCACTTAGCCCGCACCATTTGCCGACGGGCTGAACGAAGCGTCATC
CCCCTTGTCAACTCCGAGCAGGTCGATCCTGAGGTGGGCATCTATTTGAA
CCGCCTGTCGGACTTCTTGTTCGTCGCGGCGCGGTGGGCGGCCAAGAGCG
AGGGCCACGAGGAGACCGTGTGGGTGAAGTAAAGAGAATGAATGGGGAGA
GGACGGGAGGGAGGGAGGGAGGAAGGGGAGGGAAGCATGCATTTTTCGTT
CTCGTCTTTCTCTCTCTGATTCTCTCCATCTCGCTTATTTAATTT

protein sequence of jgi.p|Nanoce1779_2|612145

>mRNA_10611-protein ID=mRNA_10611-protein|Name=jgi.p|Nanoce1779_2|612145|organism=Nannochloropsis oceanica|type=polypeptide|length=184bp
MIYTRTGDKGTSSLYNGERRPKNDATFDALGATDELNAAIGLAKEHAITK
SALGGPLCQIQSRLLDLGAAIATPAQTSDDHKRERTRFDPTHVKKVEEWI
DELDGRLPPLKNFILPSGGLCSAHLHLARTICRRAERSVIPLVNSEQVDP
EVGIYLNRLSDFLFVAARWAAKSEGHEETVWVK*

mRNA from alignment at scaffold_62:13758..16311+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10611 ID=mRNA_10611|Name=jgi.p|Nanoce1779_2|612145|organism=Nannochloropsis oceanica|type=mRNA|length=2554bp|location=Sequence derived from alignment at scaffold_62:13758..16311+ (Nannochloropsis oceanica)
CAGGCAGTCCACGAACCAAGCGCCCGGAAGGGAAAAAAAGGTGCCGACCG
CGGGGAGATAAACATGCAATGCTGAGCTCGCTGCCTTTCCACACCTTTCG
TCCCGTCCGTCGCATCATCACATCGTCGTTCGCCACCAACACCACCAGCA
GAGGCAGTAGTAGCGTCTGCAGGCAATTTACCACCCACCTGTCCCGTCGT
CCATCCTCGTCTACCACCAGCATGGCACCCTCACTCTTGGCGCTCGCGGC
GTCGGCGGGAAATAGCATAACACTGAGTGAATTAACGCTGCACAAGCTGC
AAGGAGCACAGCTGTTTGTCGGGAGCGGCGTGGCTTTCCTCTTCGCGGCT
CATCGCTGGCAGGTACGGATGGAAGGTAAAAATGTGGAGGAAGCCTGGAG
AGGGATGCTTCAGTCATATGTTCGAACCAAAGGTTGATGCGTGGACACCT
TCGATCAGGAATGGCGACGTGGTCTGTCGACCAGTGCAGGGGAAGGAGCC
GCCCGGGACAAGAAGAAGAAGAAGAAGAGTATGATATACACCCGCACGGG
AGATAAAGGCACGTCCAGCCTATATAATGGAGAGGTAAGGCCGAAACGAA
GGAAGGCTAGAGCAATGGAGGAAGGGAGAACGAGAAATAAGGGTGGACAC
ACGATGTTGACACTTCCATGTTGTCTTACTCCTTCACTTCTCCCTCCCCT
CCCACCCTCCCCTCCCTCCTCTCCCTCCTCTCACTTCCTCCACTCCATTC
CACCATAGCGACGGCCAAAAAATGACGCGACCTTCGATGCATTGGGTGCA
ACGGACGAGCTCAACGCAGCTATTGGCCTCGCGAAGGAGCATGCCATGTA
AGGAGAGGGGGAGGGAGGGAGGAAGGGAAAGAGTGAGGGAGGGTGGGAGG
GAGGGTGGGAGGGAGAGAGGGAGGGCGAGCAGGTGTGCAGGAGTAGACGA
GCCTTATAGGAGAGTAGTAGTACACGGCTTGGTGCGCATCAAAGCCAGCC
TTGACTGTACAATGTCGTTTACTCACTCCATTGACTGACTCGACGCAACA
CACAGCACCAAGAGCGCCTTGGGAGGGCCGCTGTGTCAGATCCAATCCCG
CCTTCTGGACTTGGGGGCTGCCATCGCCACGCCCGCGCAGGTGGGAAGGA
GGGAGGGAGGGAGGGAGGGAGGGTGTGGTGTAACTTGAATTTCCGATTTT
TCACGGCCTGCATCTGTCTTCCGGGTCTGTTGCTTTTCCCGCTCCCTCTC
TACTCCTTCCTTTCCTCTTCCCACTGACGGCCAGTCTATTTCTCCAATTC
CTATTTGTGTCTATTTCTTTTCCCGCCCCCTCCCCCTCCCTACTACTGCT
CACCCTTTTAAACTTTCGTCCTTCCCTTCGGACAGACGTCGGACGACCAC
AAACGAGAACGGACGCGCTTCGACCCCACCCACGTCAAGAAGGTAAGTTG
ATTTAGATTATCAAGCAGGGAAATTTGATTCGGATTCTCAAGAATATTGG
TTGGTTTGGCTTCCCCTTCATTTTCTGGCTCCTCTACTACGGCCCTTCAT
CACCGTCCCTTCCTTCCTTCCTCCCTCCCTCCCTCCCTACCTCCCTCCCT
CCCCCCGATCAGGTGGAGGAGTGGATCGACGAACTCGACGGCCGCCTCCC
TCCTCTCAAGAACTTTATCCTCCCCTCTGGAGGGCTCTGCAGTGCGCATC
TGCACTTAGCCCGGTACGGAGGGAGGGAGGGAATGGCAGGGAGGGAGAAT
GGAGGGCGGGAAGGAGATGGAAATGCTCGTGCATGTGTTTCTTCGCAACT
CACTTTCTGCCTTGTCAATGTCCCTCCTTCCCTCCTTCCCTGTTCCCTTT
CCCTTCTGTGTCCTTCAGCACCATTTGCCGACGGGCTGAACGAAGCGTCA
TCCCCCTTGTCAACTCCGAGCAGGTCGATCCTGAGGTACGCTTGTGCCCT
CCCTCCTTCGCTTCCTCCTTCCCTCTCTCATTCCTCCCTTCGCCTCCTTT
TACTTCGAACGCTGTACCATCCGTGTCTTCTTCTCTCTATCCATCTACGT
GTGCACACACTCTCTCCTTTTCCTTATAATCGCCTATTCCACCCTCCTAA
TTACCCATTCCGCCCTCCTCCTAATCACCCCTTCCTCCTCCTTATCACCC
ATTCCACCCTCGTAATCATCTATTCCATCCTTCTAATAATCCATTCCACC
ATCTTAGTCATTCATTCCACCATCCTAATAATCCATCATCCACGTCTCTC
CTCGTCGCCTTCTTCCCTTGGTTCATGCCGTCAGCCTTCCCACCCCTCCA
TGGTCCCATCCCTCTCTCCATCCCCATCCATCCCCTCCTTAGGTGGGCAT
CTATTTGAACCGCCTGTCGGACTTCTTGTTCGTCGCGGCGCGGTGGGCGG
CCAAGAGCGAGGGCCACGAGGAGACCGTGTGGGTGAAGTAAAGAGAATGA
ATGGGGAGAGGACGGGAGGGAGGGAGGGAGGAAGGGGAGGGAAGCATGCA
TTTTTCGTTCTCGTCTTTCTCTCTCTGATTCTCTCCATCTCGCTTATTTA
ATTT

Coding sequence (CDS) from alignment at scaffold_62:13758..16311+

>mRNA_10611 ID=mRNA_10611|Name=jgi.p|Nanoce1779_2|612145|organism=Nannochloropsis oceanica|type=CDS|length=3864bp|location=Sequence derived from alignment at scaffold_62:13758..16311+ (Nannochloropsis oceanica)
ATGATATACACCCGCACGGGAGATAAAGGCACGTCCAGCCTATATAATGG
AGAGCGACGGCCAAAAAATGACGCGACCTTCGATGCATTGGGTGCAACGG
ACGAGCTCAACGCAGCTATTGGCCTCGCGAAGGAGCATGCCATCACCAAG
AGCGCCTTGGGAGGGCCGCTGTGTCAGATCCAATCCCGCCTTCTGGACTT
GGGGGCTGCCATCGCCACGCCCGCGCAGACGTCGGACGACCACAAACGAG
AACGGACGCGCTTCGACCCCACCCACGTCAAGAAGGTGGAGGAGTGGATC
GACGAACTCGACGGCCGCCTCCCTCCTCTCAAGAACTTTATCCTCCCCTC
TGGAGGGCTCTGCAGTGCGCATCTGCACTTAGCCCGCACCATTTGCCGAC
GGGCTGAACGAAGCGTCATCCCCCTTGTCAACTCCGAGCAGGTCGATCCT
GAGGTGGGCATCTATTTGAACCGCCTGTCGGACTTCTTGTTCGTCGCGGC
GCGGTGGGCGGCCAAGAGCGAGGGCCACGAGGAGACCGTGTGGGTGAAGT
AAATGATATACACCCGCACGGGAGATAAAGGCACGTCCAGCCTATATAAT
GGAGAGCGACGGCCAAAAAATGACGCGACCTTCGATGCATTGGGTGCAAC
GGACGAGCTCAACGCAGCTATTGGCCTCGCGAAGGAGCATGCCATCACCA
AGAGCGCCTTGGGAGGGCCGCTGTGTCAGATCCAATCCCGCCTTCTGGAC
TTGGGGGCTGCCATCGCCACGCCCGCGCAGACGTCGGACGACCACAAACG
AGAACGGACGCGCTTCGACCCCACCCACGTCAAGAAGGTGGAGGAGTGGA
TCGACGAACTCGACGGCCGCCTCCCTCCTCTCAAGAACTTTATCCTCCCC
TCTGGAGGGCTCTGCAGTGCGCATCTGCACTTAGCCCGCACCATTTGCCG
ACGGGCTGAACGAAGCGTCATCCCCCTTGTCAACTCCGAGCAGGTCGATC
CTGAGGTGGGCATCTATTTGAACCGCCTGTCGGACTTCTTGTTCGTCGCG
GCGCGGTGGGCGGCCAAGAGCGAGGGCCACGAGGAGACCGTGTGGGTGAA
GTAAATGATATACACCCGCACGGGAGATAAAGGCACGTCCAGCCTATATA
ATGGAGAGCGACGGCCAAAAAATGACGCGACCTTCGATGCATTGGGTGCA
ACGGACGAGCTCAACGCAGCTATTGGCCTCGCGAAGGAGCATGCCATCAC
CAAGAGCGCCTTGGGAGGGCCGCTGTGTCAGATCCAATCCCGCCTTCTGG
ACTTGGGGGCTGCCATCGCCACGCCCGCGCAGACGTCGGACGACCACAAA
CGAGAACGGACGCGCTTCGACCCCACCCACGTCAAGAAGGTGGAGGAGTG
GATCGACGAACTCGACGGCCGCCTCCCTCCTCTCAAGAACTTTATCCTCC
CCTCTGGAGGGCTCTGCAGTGCGCATCTGCACTTAGCCCGCACCATTTGC
CGACGGGCTGAACGAAGCGTCATCCCCCTTGTCAACTCCGAGCAGGTCGA
TCCTGAGGTGGGCATCTATTTGAACCGCCTGTCGGACTTCTTGTTCGTCG
CGGCGCGGTGGGCGGCCAAGAGCGAGGGCCACGAGGAGACCGTGTGGGTG
AAGTAAATGATATACACCCGCACGGGAGATAAAGGCACGTCCAGCCTATA
TAATGGAGAGCGACGGCCAAAAAATGACGCGACCTTCGATGCATTGGGTG
CAACGGACGAGCTCAACGCAGCTATTGGCCTCGCGAAGGAGCATGCCATC
ACCAAGAGCGCCTTGGGAGGGCCGCTGTGTCAGATCCAATCCCGCCTTCT
GGACTTGGGGGCTGCCATCGCCACGCCCGCGCAGACGTCGGACGACCACA
AACGAGAACGGACGCGCTTCGACCCCACCCACGTCAAGAAGGTGGAGGAG
TGGATCGACGAACTCGACGGCCGCCTCCCTCCTCTCAAGAACTTTATCCT
CCCCTCTGGAGGGCTCTGCAGTGCGCATCTGCACTTAGCCCGCACCATTT
GCCGACGGGCTGAACGAAGCGTCATCCCCCTTGTCAACTCCGAGCAGGTC
GATCCTGAGGTGGGCATCTATTTGAACCGCCTGTCGGACTTCTTGTTCGT
CGCGGCGCGGTGGGCGGCCAAGAGCGAGGGCCACGAGGAGACCGTGTGGG
TGAAGTAAATGATATACACCCGCACGGGAGATAAAGGCACGTCCAGCCTA
TATAATGGAGAGCGACGGCCAAAAAATGACGCGACCTTCGATGCATTGGG
TGCAACGGACGAGCTCAACGCAGCTATTGGCCTCGCGAAGGAGCATGCCA
TCACCAAGAGCGCCTTGGGAGGGCCGCTGTGTCAGATCCAATCCCGCCTT
CTGGACTTGGGGGCTGCCATCGCCACGCCCGCGCAGACGTCGGACGACCA
CAAACGAGAACGGACGCGCTTCGACCCCACCCACGTCAAGAAGGTGGAGG
AGTGGATCGACGAACTCGACGGCCGCCTCCCTCCTCTCAAGAACTTTATC
CTCCCCTCTGGAGGGCTCTGCAGTGCGCATCTGCACTTAGCCCGCACCAT
TTGCCGACGGGCTGAACGAAGCGTCATCCCCCTTGTCAACTCCGAGCAGG
TCGATCCTGAGGTGGGCATCTATTTGAACCGCCTGTCGGACTTCTTGTTC
GTCGCGGCGCGGTGGGCGGCCAAGAGCGAGGGCCACGAGGAGACCGTGTG
GGTGAAGTAAATGATATACACCCGCACGGGAGATAAAGGCACGTCCAGCC
TATATAATGGAGAGCGACGGCCAAAAAATGACGCGACCTTCGATGCATTG
GGTGCAACGGACGAGCTCAACGCAGCTATTGGCCTCGCGAAGGAGCATGC
CATCACCAAGAGCGCCTTGGGAGGGCCGCTGTGTCAGATCCAATCCCGCC
TTCTGGACTTGGGGGCTGCCATCGCCACGCCCGCGCAGACGTCGGACGAC
CACAAACGAGAACGGACGCGCTTCGACCCCACCCACGTCAAGAAGGTGGA
GGAGTGGATCGACGAACTCGACGGCCGCCTCCCTCCTCTCAAGAACTTTA
TCCTCCCCTCTGGAGGGCTCTGCAGTGCGCATCTGCACTTAGCCCGCACC
ATTTGCCGACGGGCTGAACGAAGCGTCATCCCCCTTGTCAACTCCGAGCA
GGTCGATCCTGAGGTGGGCATCTATTTGAACCGCCTGTCGGACTTCTTGT
TCGTCGCGGCGCGGTGGGCGGCCAAGAGCGAGGGCCACGAGGAGACCGTG
TGGGTGAAGTAAATGATATACACCCGCACGGGAGATAAAGGCACGTCCAG
CCTATATAATGGAGAGCGACGGCCAAAAAATGACGCGACCTTCGATGCAT
TGGGTGCAACGGACGAGCTCAACGCAGCTATTGGCCTCGCGAAGGAGCAT
GCCATCACCAAGAGCGCCTTGGGAGGGCCGCTGTGTCAGATCCAATCCCG
CCTTCTGGACTTGGGGGCTGCCATCGCCACGCCCGCGCAGACGTCGGACG
ACCACAAACGAGAACGGACGCGCTTCGACCCCACCCACGTCAAGAAGGTG
GAGGAGTGGATCGACGAACTCGACGGCCGCCTCCCTCCTCTCAAGAACTT
TATCCTCCCCTCTGGAGGGCTCTGCAGTGCGCATCTGCACTTAGCCCGCA
CCATTTGCCGACGGGCTGAACGAAGCGTCATCCCCCTTGTCAACTCCGAG
CAGGTCGATCCTGAGGTGGGCATCTATTTGAACCGCCTGTCGGACTTCTT
GTTCGTCGCGGCGCGGTGGGCGGCCAAGAGCGAGGGCCACGAGGAGACCG
TGTGGGTGAAGTAA

Synonyms

Publications