jgi.p|Nanoce1779_2|612143, mRNA_10610 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|612143
Unique NamemRNA_10610
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1149
Alignment locationscaffold_62:11931..13519 -

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Properties
Property NameValue
TranscriptId612229
TrackFilteredModels2
ProteinId612143
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_62supercontigscaffold_62:11931..13519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612143gene_10610Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612143mRNA_10610-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10610CDS_10610Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10610 ID=mRNA_10610|Name=jgi.p|Nanoce1779_2|612143|organism=Nannochloropsis oceanica|type=mRNA|length=1149bp
GGGCGACGTGTTCCCGTTTCGCCAAGAGCAATTTCCTCAGCGGTGTGTGG
AGTGTTCTGTTGACCACATGCCCCTGATGGTGTGCTAAGGAAGCAAGCTT
CGATAAAGTATGTGCGTCCATTACGGTGCTTCTTCTATCTGGGAGGCCAT
GCCTTTACGCATCTTTGATTCCAGCACTCCCTTGGCTACTTCTGGGAGTC
TATTTGCTAACATTGCCATACCCGATTAAAGTCTGCTCTATCAAGCCAGC
AACACGACCTATGGCGGCCCCACTTCCGCCGATGGCCTCTTCTCTACCTG
TAGCGGCCCTTCCGCCACCGGCTATACATACCTCCCACTCACCACCCTTG
CGGCCTGCCCGCTACACCAAGGTCGATCTTCTCACCCCAGCGAGCCTCGG
TCACAACCTGGTGCTGCGGGTCCTGCGCATCAAGACGATGCTGGAACGGG
CAAGGGTCGATGGAAGCATAACGAAAATTGCTGAGGTCACCGTTGGGGAC
GAAACCGGCACCATTACTTTGCGCGCCCGGAACGGTCAGGTGGATTTCCT
TGTACAGGGCTTGAGGGAAACGGAAGAGGATGAAACAAAGCCTCTCGTGG
TGGTGGTGCGTAATGCGGGCGTGGCCATGTACAAGGGCCATATGCGCCTG
ATTGTCAACAAGTGGGGCAAGCTGTCCAGATACCCAGACGGGATCTCCTC
TACACCCTCTGCCCCCTTCGAGGTGAACGAGGAGACCGACAAGTCAGGTG
TTGAGTACGAATTGATTCATCGCGGACCAGAGGGGGTAGGGGAAGAAGAA
GAAGAAGATAACGAGGAGGAGGAGATAGGGAATGAAGAGGAAATGGCGGA
AGAGATTTGAGCACGCCTAGAGGTAGGGTGCAAGGAGGATGGGAGTGAAT
GAGGAAGACGCATGCTCTCTTGCCAGCGTGAGATAACTTAGGCGAAAGCA
GAGAGCTTAATAATCGAAAACCCCAGCCCATACACATTAAAAAAAGTCGT
TTACACATATAAGAAACACCGGCTCAGGGAAAACTTTACGGGTTGGAAAA
AAGGCTGTGGAGCCGCAGGAAATCAACGGAGGGATTGATGGCGGCCGAGC
GAGCAGCACCTGGACACTAAAAAGACTTAAAATCAAAAGCGTGTCTAAA
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protein sequence of jgi.p|Nanoce1779_2|612143

>mRNA_10610-protein ID=mRNA_10610-protein|Name=jgi.p|Nanoce1779_2|612143|organism=Nannochloropsis oceanica|type=polypeptide|length=200bp
MAAPLPPMASSLPVAALPPPAIHTSHSPPLRPARYTKVDLLTPASLGHNL
VLRVLRIKTMLERARVDGSITKIAEVTVGDETGTITLRARNGQVDFLVQG
LRETEEDETKPLVVVVRNAGVAMYKGHMRLIVNKWGKLSRYPDGISSTPS
APFEVNEETDKSGVEYELIHRGPEGVGEEEEEDNEEEEIGNEEEMAEEI*
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mRNA from alignment at scaffold_62:11931..13519-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10610 ID=mRNA_10610|Name=jgi.p|Nanoce1779_2|612143|organism=Nannochloropsis oceanica|type=mRNA|length=1589bp|location=Sequence derived from alignment at scaffold_62:11931..13519- (Nannochloropsis oceanica)
GGGCGACGTGTTCCCGTTTCGCCAAGAGCAATTTCCTCAGCGGTGTGTGG
AGTGTTCTGTTGACCACATGCCCCTGATGGTGTGCTAAGGAAGCAAGCTT
CGATAAAGTATGTGCGTCCATTACGGTGCTTCTTCTATCTGGGAGGCCAT
GCCTTTACGCATCTTTGATTCCAGCACTCCCTTGGCTACTTCTGGGAGTC
TATTTGCTAACATTGCCATACCCGATTAAAGTCTGCTCTATCAAGCCAGC
AACACGACCTATGGCGGCCCCACTTCCGCCGATGGCCTCTTCTCTACCTG
TAGCGGCCCTTCCGCCACCGGCTATACATACCTCCCACTCACCACCCTTG
CGGCCTGCCCGCTACACCAAGGTTTGTTGCATCTCTTAGTGGCTCTGCGA
GTGAGCCACGTATAATGTCGCTCCCTCTTTTCCTCTCTACCCCTAGGTCG
ATCTTCTCACCCCAGCGAGCCTCGGTCACAACCTGGTGCTGCGGGTCCTG
CGCATCAAGACGATGCTGGAACGGGCAAGGGTCGATGGAAGCATAACGAA
GTGAGGATGGTGGGAGGAGAGGGGGGAGAGCAAAAGGGTGGGAGGTGGAA
TAGACATTCTCTGGGCAACATTCTACATATTCAAGCCCCATCTCATGAAG
TCACACAGCCAATCCCCAAATTATATATCCTCTCTCTTGTATTTCCTACA
CAGAATTGCTGAGGTCACCGTTGGGGACGAAACCGGCACCATTACTTTGC
GCGCCCGGAACGGTCAGGTGGATTTCCTTGTACAGGGCTTGAGGGAAACG
GAAGAGGATGAAACAAAGCCTCTCGTGGTGGTGGTGCGTAATGCGGGCGT
GGCCATGTACAAGGGCCATATGCGCCTGATTGTCAACAAGTGGGGCAAGC
TGTCCAGGTATTTTCCTCTCCCTCCATCTTCCTCTTCCGCAGTCCCCCCT
TTTCCTTCCTCCTTCCCTACTTCCCTCCTTGAATGAACTCTCACATCTCT
CCTTTAAATGACCGACTCGCTTATCTAGAATAAGTAAGAAGAGTGCAGAT
CTGAAGATTAAGTGGCATTACACGTCCCTTTTGTCCCCACCTCGCTCCCT
TTCCTCTCTTTCGCCCTAGATACCCAGACGGGATCTCCTCTACACCCTCT
GCCCCCTTCGAGGTGAACGAGGAGACCGACAAGTCAGGTGTTGAGTACGA
ATTGATTCATCGCGGACCAGAGGGGGTAGGGGAAGAAGAAGAAGAAGATA
ACGAGGAGGAGGAGATAGGGAATGAAGAGGAAATGGCGGAAGAGATTTGA
GCACGCCTAGAGGTAGGGTGCAAGGAGGATGGGAGTGAATGAGGAAGACG
CATGCTCTCTTGCCAGCGTGAGATAACTTAGGCGAAAGCAGAGAGCTTAA
TAATCGAAAACCCCAGCCCATACACATTAAAAAAAGTCGTTTACACATAT
AAGAAACACCGGCTCAGGGAAAACTTTACGGGTTGGAAAAAAGGCTGTGG
AGCCGCAGGAAATCAACGGAGGGATTGATGGCGGCCGAGCGAGCAGCACC
TGGACACTAAAAAGACTTAAAATCAAAAGCGTGTCTAAA
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Coding sequence (CDS) from alignment at scaffold_62:11931..13519-

>mRNA_10610 ID=mRNA_10610|Name=jgi.p|Nanoce1779_2|612143|organism=Nannochloropsis oceanica|type=CDS|length=2400bp|location=Sequence derived from alignment at scaffold_62:11931..13519- (Nannochloropsis oceanica)
ATACCCAGACGGGATCTCCTCTACACCCTCTGCCCCCTTCGAGGTGAACG
AGGAGACCGACAAGTCAGGTGTTGAGTACGAATTGATTCATCGCGGACCA
GAGGGGGTAGGGGAAGAAGAAGAAGAAGATAACGAGGAGGAGGAGATAGG
GAATGAAGAGGAAATGGCGGAAGAGATTTGAAATTGCTGAGGTCACCGTT
GGGGACGAAACCGGCACCATTACTTTGCGCGCCCGGAACGGTCAGGTGGA
TTTCCTTGTACAGGGCTTGAGGGAAACGGAAGAGGATGAAACAAAGCCTC
TCGTGGTGGTGGTGCGTAATGCGGGCGTGGCCATGTACAAGGGCCATATG
CGCCTGATTGTCAACAAGTGGGGCAAGCTGTCCAGGTCGATCTTCTCACC
CCAGCGAGCCTCGGTCACAACCTGGTGCTGCGGGTCCTGCGCATCAAGAC
GATGCTGGAACGGGCAAGGGTCGATGGAAGCATAACGAAATGGCGGCCCC
ACTTCCGCCGATGGCCTCTTCTCTACCTGTAGCGGCCCTTCCGCCACCGG
CTATACATACCTCCCACTCACCACCCTTGCGGCCTGCCCGCTACACCAAG
ATACCCAGACGGGATCTCCTCTACACCCTCTGCCCCCTTCGAGGTGAACG
AGGAGACCGACAAGTCAGGTGTTGAGTACGAATTGATTCATCGCGGACCA
GAGGGGGTAGGGGAAGAAGAAGAAGAAGATAACGAGGAGGAGGAGATAGG
GAATGAAGAGGAAATGGCGGAAGAGATTTGAAATTGCTGAGGTCACCGTT
GGGGACGAAACCGGCACCATTACTTTGCGCGCCCGGAACGGTCAGGTGGA
TTTCCTTGTACAGGGCTTGAGGGAAACGGAAGAGGATGAAACAAAGCCTC
TCGTGGTGGTGGTGCGTAATGCGGGCGTGGCCATGTACAAGGGCCATATG
CGCCTGATTGTCAACAAGTGGGGCAAGCTGTCCAGGTCGATCTTCTCACC
CCAGCGAGCCTCGGTCACAACCTGGTGCTGCGGGTCCTGCGCATCAAGAC
GATGCTGGAACGGGCAAGGGTCGATGGAAGCATAACGAAATGGCGGCCCC
ACTTCCGCCGATGGCCTCTTCTCTACCTGTAGCGGCCCTTCCGCCACCGG
CTATACATACCTCCCACTCACCACCCTTGCGGCCTGCCCGCTACACCAAG
ATACCCAGACGGGATCTCCTCTACACCCTCTGCCCCCTTCGAGGTGAACG
AGGAGACCGACAAGTCAGGTGTTGAGTACGAATTGATTCATCGCGGACCA
GAGGGGGTAGGGGAAGAAGAAGAAGAAGATAACGAGGAGGAGGAGATAGG
GAATGAAGAGGAAATGGCGGAAGAGATTTGAAATTGCTGAGGTCACCGTT
GGGGACGAAACCGGCACCATTACTTTGCGCGCCCGGAACGGTCAGGTGGA
TTTCCTTGTACAGGGCTTGAGGGAAACGGAAGAGGATGAAACAAAGCCTC
TCGTGGTGGTGGTGCGTAATGCGGGCGTGGCCATGTACAAGGGCCATATG
CGCCTGATTGTCAACAAGTGGGGCAAGCTGTCCAGGTCGATCTTCTCACC
CCAGCGAGCCTCGGTCACAACCTGGTGCTGCGGGTCCTGCGCATCAAGAC
GATGCTGGAACGGGCAAGGGTCGATGGAAGCATAACGAAATGGCGGCCCC
ACTTCCGCCGATGGCCTCTTCTCTACCTGTAGCGGCCCTTCCGCCACCGG
CTATACATACCTCCCACTCACCACCCTTGCGGCCTGCCCGCTACACCAAG
ATACCCAGACGGGATCTCCTCTACACCCTCTGCCCCCTTCGAGGTGAACG
AGGAGACCGACAAGTCAGGTGTTGAGTACGAATTGATTCATCGCGGACCA
GAGGGGGTAGGGGAAGAAGAAGAAGAAGATAACGAGGAGGAGGAGATAGG
GAATGAAGAGGAAATGGCGGAAGAGATTTGAAATTGCTGAGGTCACCGTT
GGGGACGAAACCGGCACCATTACTTTGCGCGCCCGGAACGGTCAGGTGGA
TTTCCTTGTACAGGGCTTGAGGGAAACGGAAGAGGATGAAACAAAGCCTC
TCGTGGTGGTGGTGCGTAATGCGGGCGTGGCCATGTACAAGGGCCATATG
CGCCTGATTGTCAACAAGTGGGGCAAGCTGTCCAGGTCGATCTTCTCACC
CCAGCGAGCCTCGGTCACAACCTGGTGCTGCGGGTCCTGCGCATCAAGAC
GATGCTGGAACGGGCAAGGGTCGATGGAAGCATAACGAAATGGCGGCCCC
ACTTCCGCCGATGGCCTCTTCTCTACCTGTAGCGGCCCTTCCGCCACCGG
CTATACATACCTCCCACTCACCACCCTTGCGGCCTGCCCGCTACACCAAG
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Synonyms
Publications