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Properties
| Property Name | Value |
|---|
| TranscriptId | 550528 |
| Track | FilteredModels2 |
| ProteinId | 550442 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_2 | supercontig | scaffold_2:1120023..1123680 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1061 ID=mRNA_1061|Name=jgi.p|Nanoce1779_2|550442|organism=Nannochloropsis oceanica|type=mRNA|length=3392bp
GTCCACAACCCTCGCTCCCCTCGGCAACAACGCGTTCAAAAACGCCCCTC
CTCCCCCTCCTCCTCCTCCTCCTTCTCCTCCTCCTCCTCCTCCACAACCC
AGCGCAGGGAAATCCTCCCTGCTCAAGCCACCTACCCCCGTCCTCCCTCC
TGGTGCCACTCTCCCAACTCCTCCTCCTCTCCCTCCCCCTCCAACTGTAG
CTGCTGCAGCAGCTCCTACTGCTGCTCCCATCGGCATTATCCTCCCCCTC
GTCCTCGCCGTCTGCTGACTCAAATCCGGGAACTGTTCCGATGTCATTTG
GAATGTCAAAGGTGCCCCCCCCCCCCCCTCCCTCGTACCCTCCTTCCTCC
CCTCCTTCGCTTCCTCCCTTTTTCACCTTAAACGCCACCGCAAGCTTCCT
CCTGCTGCTGGGTGCTTGGTCGGGGTGGGCGGCGAGCAGGTGGCCTTGGT
AATCGATGGGGTTGGCGAACACGACGAAGCGCTGGGCGAGACAGCGGGGG
TCTTCACACAGGTCACAGCTGTAATGGTTCTTCACCAAGTGCTGGTACAA
CGCCCCCGTGTCGTAGAACCGTTGCTGCTTGCAGAACTCACAGGCAGGAT
GACCGAAGAAGCCCCTGCTGGCATCTCCTTTGTCTCTGTGCCGGGCCAGT
TCCCCGCGGGTGTACAACGTCTGCTCTCCCAGGAATGCCTTTTTATGCTC
CACACACACATCGCACACAAACCGCTCGTGCGCCCTCTGCAAGTGCTCCC
GTAAACTTGGTAACGACCGACACAGGAGGCCACAGCCCGGGGCACGACAA
ACAGCAGCATGCAGGAGTTGAAAGACGTTTTGATGAAACGCCTTGGGCAT
GATGGTCCGACTTGCGTCGTCTGTAACCGTCCCTGGGCCCCCGTCCATGC
CCCAGATGGGGAGGGCAAGGAAGGGTTTAATGTCTCGGGGGGAGTCAAAG
ATGAAGACGATGTCCTGTGGGGTCTTGCACATGGGGCAGTTCTGAATAAA
GGCGGGAGAGAGGGAGGAAGGGTATAAGGGACAGTGGGGAGGAAAGGTGT
TATTCGGAATTGGTCCTACTAGACGCAAGCCTAGTATTAGAATTTAGTAA
TTTTTCCCTCTCCAAAAACCTTCTTCCAAACACTCTCCCTTTCTTTCCAA
CTTGATTAAACGAGAAAACAAAAAAAAACAAAGCGCTTTAGACTCTGTGC
TTGATAAACTCGCGATCCTTTCCTCACCTGATCCCCCAACAGCCGGCGCA
ACCGCAAATAACACAAGGCACACGTATCCACATGCTCACACGCCCCCATC
GCCGGCCGATGAATCTCACTGTTCAATGGCTCGGTACACACGGCACATAC
CAACCCATCAATCGACTCTTTTCGCGCCGGAGTTACAGCCACCGCTGTTA
GAGGCTGGCCATGCTCCTCATGTGCTACTGCCTCCCCGTTGATCTTGGCG
AGCAACGCCAAGGCCTCCGGTCCCACGTTTTTCTGGAAGCTCCCATCCTC
CTTCAAGCTCATACCCGTAGCCATGGACTCAGCCAAGCCTGGTGGTGGGG
GAGGTCCCGAGGGAACAGGGCGGTGGCCACTGCTACAGCTGCTGCTGCCG
AAGCCTCCTCCGCCACCTCTGCCCCCGCCGCGACCACCACCTCCACCACC
ACCGCGTCTGTCTCCTCTTCCTCCTCTTCCTCCTCCTCCTCCTCCTGCTC
CTCCTCCTCGTGCATCTCCCCCCAATGAGGAGCGAAAACTGCCACCCCCT
CCGCCACCACCACCTCGTGCTTCTCCTCGCGACCTCCCCCCCCCACCCTG
CCTCCCTCCACCTTTGCTGCTGCCTCCTCCTCCACTTGCGCCGCTACCAC
TACCATCACCTGCGCCCGGCATTGTCAACACCACCTCGTAGTGTCTCTCT
GTAATGTGTGGTTGCGTCAATGTGAATTCGCTTGTGTGTCATGCTTCGTG
ATGTTCTCATGCACGCCACCGCACACCGCACGTTGACGGCATCGCTTTCT
TCTGCCGCAACTGACAGCGCATCACCATCTCACAATGAATCTCCCTGCCC
ATCATCCACCACTCAGCAACCAACATCACCTATCCAACACACGCATCTGC
CTATACAGCAGGAGCAGCAGGAGCAGCAGGAGCAGCAAGAGCGGCGGCGG
GCTGTGGCAGCAGCGGCTCTGACCAGCAAGGTACAAAAAATGGAGCGATT
AAAAACCTCCTCTCTCTTCCGCATTATCTGATCACAAAGCACCATGACCG
CTGCATTCCACACTCCGGCCTCCGTCACCGCCTTGCTTCAAAGACTTGAG
CTCTTAGGAGCTGAGACGGACACGGCGGCGGTGAGTCTGACCCCCATTTC
GGGTGGCAACACGAACCGCATCTATCGTGTCACCTGTCACCTGCCTGAAG
GCGGGCAAAGGGACATGCTCTTGCGTTTCTTCGGCAAGGGCTCCGATGCT
TTTATCGATCGGCTGCAAGAAGAACGAATCTTTCACGCCGTGTCTGCGGA
AGGACTTTGTCCCAAGCTCCTGGCTACATTTCCTGAAGGCCGCGTCGAGG
AGTTTGTGCCTGATGCCGAACCCTTGACTGCCTCGCAGTTCCGCAGCCCT
GCCCTGTCCGCCTTGGTGGCCCGACAGCTCCACGCCCTTCACAGTATCTC
CCACGTGGATAAATTATCTAGACCAAGGATTCCGCCATTGTTTGCGCAAT
TACGGGACTGGGCGACGCGGGCGATGACGTTGTGTGGTGTTAAATATGAG
GGGCTGGACGTAGCAGGGTTGGTGACTGAGGTCGACCGGCTGGAGGCCCG
TTTACTTGCTGTGGCGAGCCCGGTGTGTCTTTGTCATAATGATTTGAATC
ATTTGAACGTGCTCTTGCGTGTTCGCGGGGGAATGGCCGATAAGAGTGAA
GAAAAGGCCAACAGAGGTTTAGATTCCAACAAGGATCAGGAAGAGGACAA
GGCGAAAGATAGCATCGTTTTCGTCGACCTTGAGTACGCCGGATGGAACT
ATCGAGGTTTCGATCTGGGTAATCTGATCTGTGAATGGGCTAGTGACTTT
CAATCCACCCATCCCCACCTCCTGGATTTCACCCACCATTACCCAACAAC
ACAACAACAGCACCACCTCGCGCGAGCCTACTTAGGGGGAGGGAAGGACA
CGACGGAGGAAGACGTGGAAAATCTTGTATTTGAGATGCAGGAATTTTCG
TTGGCATCTCATTTGATGTGGGGTGTGTGGGGATTGTTGCAAGCAAAGTT
GTCGACGATTGATTTTGATTTTGTCGGTTTTGCCAGGCAGAGGCTGGACG
AGTACTACAAGGGGATGGGGAGGAGTAAAGGGTTGGGGAGGGGGGGGGGG
GGGGGGCAGATGAGAAGGGGAAAGAAAGTAGGAAAGTTATGA back to topprotein sequence of jgi.p|Nanoce1779_2|550442 >mRNA_1061-protein ID=mRNA_1061-protein|Name=jgi.p|Nanoce1779_2|550442|organism=Nannochloropsis oceanica|type=polypeptide|length=383bp
MTAAFHTPASVTALLQRLELLGAETDTAAVSLTPISGGNTNRIYRVTCHL
PEGGQRDMLLRFFGKGSDAFIDRLQEERIFHAVSAEGLCPKLLATFPEGR
VEEFVPDAEPLTASQFRSPALSALVARQLHALHSISHVDKLSRPRIPPLF
AQLRDWATRAMTLCGVKYEGLDVAGLVTEVDRLEARLLAVASPVCLCHND
LNHLNVLLRVRGGMADKSEEKANRGLDSNKDQEEDKAKDSIVFVDLEYAG
WNYRGFDLGNLICEWASDFQSTHPHLLDFTHHYPTTQQQHHLARAYLGGG
KDTTEEDVENLVFEMQEFSLASHLMWGVWGLLQAKLSTIDFDFVGFARQR
LDEYYKGMGRSKGLGRGGGGGQMRRGKKVGKL* back to topmRNA from alignment at scaffold_2:1120023..1123680+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1061 ID=mRNA_1061|Name=jgi.p|Nanoce1779_2|550442|organism=Nannochloropsis oceanica|type=mRNA|length=3658bp|location=Sequence derived from alignment at scaffold_2:1120023..1123680+ (Nannochloropsis oceanica)
GTCCACAACCCTCGCTCCCCTCGGCAACAACGCGTTCAAAAACGCCCCTC
CTCCCCCTCCTCCTCCTCCTCCTTCTCCTCCTCCTCCTCCTCCACAACCC
AGCGCAGGGAAATCCTCCCTGCTCAAGCCACCTACCCCCGTCCTCCCTCC
TGGTGCCACTCTCCCAACTCCTCCTCCTCTCCCTCCCCCTCCAACTGTAG
CTGCTGCAGCAGCTCCTACTGCTGCTCCCATCGGCATTATCCTCCCCCTC
GTCCTCGCCGTCTGCTGACTCAAATCCGGGAACTGTTCCGATGTCATTTG
GAATGTCAAAGGTGCCCCCCCCCCCCCCTCCCTCGTACCCTCCTTCCTCC
CCTCCTTCGCTTCCTCCCTTTTTCACCTTAAACGCCACCGCAAGCTTCCT
CCTGCTGCTGGGTGCTTGGTCGGGGTGGGCGGCGAGCAGGTGGCCTTGGT
AATCGATGGGGTTGGCGAACACGACGAAGCGCTGGGCGAGACAGCGGGGG
TCTTCACACAGGTGATGCTCCTGCCGGAAGTGGCGCTCTAGGTCGGGGTA
GTCACTGGAGGAGGGAAGGGGGGAGGGAAGGAGGGGGGAAGGGAGGGGGG
AAGGGAGGGGATGGGAGGGGGGAAGGGAGGGGATGGGAGGGGGGAAGGGA
GGGGATGGGATAGGCACCATGAGTCGATGGATGGTGGAGAGAGGGAGGGA
GGCAAGGGGGGAGGGAGGGAGGGCAAGGCCACGTACCGATAATACCGATG
TTGAATCCCCGCATGTCGCTCGCACAGGTCACAGCTGTAATGGTTCTTCA
CCAAGTGCTGGTACAACGCCCCCGTGTCGTAGAACCGTTGCTGCTTGCAG
AACTCACAGGCAGGATGACCGAAGAAGCCCCTGCTGGCATCTCCTTTGTC
TCTGTGCCGGGCCAGTTCCCCGCGGGTGTACAACGTCTGCTCTCCCAGGA
ATGCCTTTTTATGCTCCACACACACATCGCACACAAACCGCTCGTGCGCC
CTCTGCAAGTGCTCCCGTAAACTTGGTAACGACCGACACAGGAGGCCACA
GCCCGGGGCACGACAAACAGCAGCATGCAGGAGTTGAAAGACGTTTTGAT
GAAACGCCTTGGGCATGATGGTCCGACTTGCGTCGTCTGTAACCGTCCCT
GGGCCCCCGTCCATGCCCCAGATGGGGAGGGCAAGGAAGGGTTTAATGTC
TCGGGGGGAGTCAAAGATGAAGACGATGTCCTGTGGGGTCTTGCACATGG
GGCAGTTCTGAATAAAGGCGGGAGAGAGGGAGGAAGGGTATAAGGGACAG
TGGGGAGGAAAGGTGTTATTCGGAATTGGTCCTACTAGACGCAAGCCTAG
TATTAGAATTTAGTAATTTTTCCCTCTCCAAAAACCTTCTTCCAAACACT
CTCCCTTTCTTTCCAACTTGATTAAACGAGAAAACAAAAAAAAACAAAGC
GCTTTAGACTCTGTGCTTGATAAACTCGCGATCCTTTCCTCACCTGATCC
CCCAACAGCCGGCGCAACCGCAAATAACACAAGGCACACGTATCCACATG
CTCACACGCCCCCATCGCCGGCCGATGAATCTCACTGTTCAATGGCTCGG
TACACACGGCACATACCAACCCATCAATCGACTCTTTTCGCGCCGGAGTT
ACAGCCACCGCTGTTAGAGGCTGGCCATGCTCCTCATGTGCTACTGCCTC
CCCGTTGATCTTGGCGAGCAACGCCAAGGCCTCCGGTCCCACGTTTTTCT
GGAAGCTCCCATCCTCCTTCAAGCTCATACCCGTAGCCATGGACTCAGCC
AAGCCTGGTGGTGGGGGAGGTCCCGAGGGAACAGGGCGGTGGCCACTGCT
ACAGCTGCTGCTGCCGAAGCCTCCTCCGCCACCTCTGCCCCCGCCGCGAC
CACCACCTCCACCACCACCGCGTCTGTCTCCTCTTCCTCCTCTTCCTCCT
CCTCCTCCTCCTGCTCCTCCTCCTCGTGCATCTCCCCCCAATGAGGAGCG
AAAACTGCCACCCCCTCCGCCACCACCACCTCGTGCTTCTCCTCGCGACC
TCCCCCCCCCACCCTGCCTCCCTCCACCTTTGCTGCTGCCTCCTCCTCCA
CTTGCGCCGCTACCACTACCATCACCTGCGCCCGGCATTGTCAACACCAC
CTCGTAGTGTCTCTCTGTAATGTGTGGTTGCGTCAATGTGAATTCGCTTG
TGTGTCATGCTTCGTGATGTTCTCATGCACGCCACCGCACACCGCACGTT
GACGGCATCGCTTTCTTCTGCCGCAACTGACAGCGCATCACCATCTCACA
ATGAATCTCCCTGCCCATCATCCACCACTCAGCAACCAACATCACCTATC
CAACACACGCATCTGCCTATACAGCAGGAGCAGCAGGAGCAGCAGGAGCA
GCAAGAGCGGCGGCGGGCTGTGGCAGCAGCGGCTCTGACCAGCAAGGTAC
AAAAAATGGAGCGATTAAAAACCTCCTCTCTCTTCCGCATTATCTGATCA
CAAAGCACCATGACCGCTGCATTCCACACTCCGGCCTCCGTCACCGCCTT
GCTTCAAAGACTTGAGCTCTTAGGAGCTGAGACGGACACGGCGGCGGTGA
GTCTGACCCCCATTTCGGGTGGCAACACGAACCGCATCTATCGTGTCACC
TGTCACCTGCCTGAAGGCGGGCAAAGGGACATGCTCTTGCGTTTCTTCGG
CAAGGGCTCCGATGCTTTTATCGATCGGCTGCAAGAAGAACGAATCTTTC
ACGCCGTGTCTGCGGAAGGACTTTGTCCCAAGCTCCTGGCTACATTTCCT
GAAGGCCGCGTCGAGGAGTTTGTGCCTGATGCCGAACCCTTGACTGCCTC
GCAGTTCCGCAGCCCTGCCCTGTCCGCCTTGGTGGCCCGACAGCTCCACG
CCCTTCACAGTATCTCCCACGTGGATAAATTATCTAGACCAAGGATTCCG
CCATTGTTTGCGCAATTACGGGACTGGGCGACGCGGGCGATGACGTTGTG
TGGTGTTAAATATGAGGGGCTGGACGTAGCAGGGTTGGTGACTGAGGTCG
ACCGGCTGGAGGCCCGTTTACTTGCTGTGGCGAGCCCGGTGTGTCTTTGT
CATAATGATTTGAATCATTTGAACGTGCTCTTGCGTGTTCGCGGGGGAAT
GGCCGATAAGAGTGAAGAAAAGGCCAACAGAGGTTTAGATTCCAACAAGG
ATCAGGAAGAGGACAAGGCGAAAGATAGCATCGTTTTCGTCGACCTTGAG
TACGCCGGATGGAACTATCGAGGTTTCGATCTGGGTAATCTGATCTGTGA
ATGGGCTAGTGACTTTCAATCCACCCATCCCCACCTCCTGGATTTCACCC
ACCATTACCCAACAACACAACAACAGCACCACCTCGCGCGAGCCTACTTA
GGGGGAGGGAAGGACACGACGGAGGAAGACGTGGAAAATCTTGTATTTGA
GATGCAGGAATTTTCGTTGGCATCTCATTTGATGTGGGGTGTGTGGGGAT
TGTTGCAAGCAAAGTTGTCGACGATTGATTTTGATTTTGTCGGTTTTGCC
AGGCAGAGGCTGGACGAGTACTACAAGGGGATGGGGAGGAGTAAAGGGTT
GGGGAGGGGGGGGGGGGGGGGGCAGATGAGAAGGGGAAAGAAAGTAGGAA
AGTTATGA back to topCoding sequence (CDS) from alignment at scaffold_2:1120023..1123680+ >mRNA_1061 ID=mRNA_1061|Name=jgi.p|Nanoce1779_2|550442|organism=Nannochloropsis oceanica|type=CDS|length=1149bp|location=Sequence derived from alignment at scaffold_2:1120023..1123680+ (Nannochloropsis oceanica)
ATGACCGCTGCATTCCACACTCCGGCCTCCGTCACCGCCTTGCTTCAAAG
ACTTGAGCTCTTAGGAGCTGAGACGGACACGGCGGCGGTGAGTCTGACCC
CCATTTCGGGTGGCAACACGAACCGCATCTATCGTGTCACCTGTCACCTG
CCTGAAGGCGGGCAAAGGGACATGCTCTTGCGTTTCTTCGGCAAGGGCTC
CGATGCTTTTATCGATCGGCTGCAAGAAGAACGAATCTTTCACGCCGTGT
CTGCGGAAGGACTTTGTCCCAAGCTCCTGGCTACATTTCCTGAAGGCCGC
GTCGAGGAGTTTGTGCCTGATGCCGAACCCTTGACTGCCTCGCAGTTCCG
CAGCCCTGCCCTGTCCGCCTTGGTGGCCCGACAGCTCCACGCCCTTCACA
GTATCTCCCACGTGGATAAATTATCTAGACCAAGGATTCCGCCATTGTTT
GCGCAATTACGGGACTGGGCGACGCGGGCGATGACGTTGTGTGGTGTTAA
ATATGAGGGGCTGGACGTAGCAGGGTTGGTGACTGAGGTCGACCGGCTGG
AGGCCCGTTTACTTGCTGTGGCGAGCCCGGTGTGTCTTTGTCATAATGAT
TTGAATCATTTGAACGTGCTCTTGCGTGTTCGCGGGGGAATGGCCGATAA
GAGTGAAGAAAAGGCCAACAGAGGTTTAGATTCCAACAAGGATCAGGAAG
AGGACAAGGCGAAAGATAGCATCGTTTTCGTCGACCTTGAGTACGCCGGA
TGGAACTATCGAGGTTTCGATCTGGGTAATCTGATCTGTGAATGGGCTAG
TGACTTTCAATCCACCCATCCCCACCTCCTGGATTTCACCCACCATTACC
CAACAACACAACAACAGCACCACCTCGCGCGAGCCTACTTAGGGGGAGGG
AAGGACACGACGGAGGAAGACGTGGAAAATCTTGTATTTGAGATGCAGGA
ATTTTCGTTGGCATCTCATTTGATGTGGGGTGTGTGGGGATTGTTGCAAG
CAAAGTTGTCGACGATTGATTTTGATTTTGTCGGTTTTGCCAGGCAGAGG
CTGGACGAGTACTACAAGGGGATGGGGAGGAGTAAAGGGTTGGGGAGGGG
GGGGGGGGGGGGGCAGATGAGAAGGGGAAAGAAAGTAGGAAAGTTATGA back to top
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