jgi.p|Nanoce1779_2|612130, mRNA_10608 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|612130
Unique Name	mRNA_10608
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	722
Alignment location	scaffold_62:7355..8602 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	612216
Track	FilteredModels2
ProteinId	612130

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_62	supercontig	scaffold_62:7355..8602 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|612130	gene_10608	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|612130	mRNA_10608-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10608	CDS_10608	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_62:7355..8602+
coding sequence from alignment at scaffold_62:7355..8602+

mRNA sequence

>mRNA_10608 ID=mRNA_10608|Name=jgi.p|Nanoce1779_2|612130|organism=Nannochloropsis oceanica|type=mRNA|length=722bp
TTCTGATCGTCCTCAGGGCCTGGGGAATGCTCGCGGCCAAGACATTGACC
AAATCCACTTCTTCTTTCCCTCCCTCCTTCCCTCCCCATCACCCACCCGG
AGGCATGAACCTCAGTGGGGTCAATGGACAGTTCTTCCGCATCCTCCAAG
GCGTGGCCAGCACCTTCGGGCTCGATCTTCAGGATGTCCTCCACCTGGAG
CCAGAGGTGTACGCAGCACTGTGTGAGGGGAATGGAAGGAACGAGCGGAG
AGGGACCGCGGGAGGGGCCCCGCGCGAGGTGCCCATGTACATCAAGGCCC
TGGACTGCGAGGCGTTCGCCGTCTCTCGACGTGTGCTTTGCCAGGGGGAG
AGCAGCTACACCTGCAACGAGGTGTTTTCCTCCATGTTTGCAACCAAGGC
CATGGCTGAACGGAGTCCGGAGCGAGCGACGGGTATTGATATCTGGCTAG
GCTGCATCGATTCGGAGGACCGCAAGGAGTTTCTGCATTCCTTCCTCTCC
ACCCTTCTCGCCTCCCCCTCCCCCTGCACCGAGACGGCCGGAATCTTCAA
GGTACGTGTGGAGGAGAGGGAGAAAAAGGTGGGAAAAGAAGGATGGAAAA
AAGGAGGGAGAGAAGGAAAGCGCGGAGGAGTGAGAGGGAGTAGAACGGAT
GCTCGTCACGAAACAAAGTGAAAAGAGGAAGGCCAATGTTCCCAAGCCCT
CAAGCCCTCCCTCCCTCCCTCC

protein sequence of jgi.p|Nanoce1779_2|612130

>mRNA_10608-protein ID=mRNA_10608-protein|Name=jgi.p|Nanoce1779_2|612130|organism=Nannochloropsis oceanica|type=polypeptide|length=215bp
MLAAKTLTKSTSSFPPSFPPHHPPGGMNLSGVNGQFFRILQGVASTFGLD
LQDVLHLEPEVYAALCEGNGRNERRGTAGGAPREVPMYIKALDCEAFAVS
RRVLCQGESSYTCNEVFSSMFATKAMAERSPERATGIDIWLGCIDSEDRK
EFLHSFLSTLLASPSPCTETAGIFKVRVEEREKKVGKEGWKKGGREGKRG
GVRGSRTDARHETK*

mRNA from alignment at scaffold_62:7355..8602+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10608 ID=mRNA_10608|Name=jgi.p|Nanoce1779_2|612130|organism=Nannochloropsis oceanica|type=mRNA|length=1248bp|location=Sequence derived from alignment at scaffold_62:7355..8602+ (Nannochloropsis oceanica)
TTCTGATCGTCCTCAGGGCCTGGGGAATGCTCGCGGCCAAGACATTGACC
AAATCCACTTCTTCTTTCCCTCCCTCCTTCCCTCCCCATCACCCACCCGG
AGGCATGAACCTCAGTGGGGTCAATGGACAGGTGAGTCCCTCCCTCCCTC
CCTCCTTCCATCCCTCTCACTATCTTCCCATCGGTCATGGTCTCATCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGTTCT
TCCGCATCCTCCAAGGCGTGGCCAGCACCTTCGGGCTCGATCTTCAGGTA
AGAAGAGAGGGAGGGAGGGAGGGAGGCAGCGAGGGAAGGAGGATGGTGAT
GCTTTGCCTCGAATCACTCGTTAATAGCTGTGTCCCTGACCATGCCACCC
CCTCCCTCCTTCCCGCCCTCCCTCCCTCCCTCAGGATGTCCTCCACCTGG
AGCCAGAGGTGTACGCAGCACTGTGTGAGGGGAATGGAAGGAACGAGCGG
AGAGGGACCGCGGGAGGGGCCCCGCGCGAGGTGCCCATGTACATCAAGGT
GGGGAGGGAGGGAGGGGAGGAGGGTGACTTTTTGAATTTTCGAATATGGG
CATGACGTTCGAATCTCATTGTTCTTCCCCAGCTCTCAAGGAAGGAGTCC
TTGTTCTCAAGCATGCACCTATCTTGCCTTCCCTTCCTCCTTCCCCCCCT
CCCTCAGGCCCTGGACTGCGAGGCGTTCGCCGTCTCTCGACGTGTGCTTT
GCCAGGGGGAGAGCAGCTACACCTGCAACGAGGTGTTTTCCTCCATGTTT
GCAACCAAGGCCATGGCTGAACGGAGTCCGGAGCGAGCGACGGGTATTGA
TATCTGGCTAGGGTGAGTCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCGCCAGGTCCTCCCCTTCCCTTTGGTACATGAAGCCTTAATC
TCCCTCCCTCCCTCCCTCCCTCCTCAGCTGCATCGATTCGGAGGACCGCA
AGGAGTTTCTGCATTCCTTCCTCTCCACCCTTCTCGCCTCCCCCTCCCCC
TGCACCGAGACGGCCGGAATCTTCAAGGTACGTGTGGAGGAGAGGGAGAA
AAAGGTGGGAAAAGAAGGATGGAAAAAAGGAGGGAGAGAAGGAAAGCGCG
GAGGAGTGAGAGGGAGTAGAACGGATGCTCGTCACGAAACAAAGTGAAAA
GAGGAAGGCCAATGTTCCCAAGCCCTCAAGCCCTCCCTCCCTCCCTCC

Coding sequence (CDS) from alignment at scaffold_62:7355..8602+

>mRNA_10608 ID=mRNA_10608|Name=jgi.p|Nanoce1779_2|612130|organism=Nannochloropsis oceanica|type=CDS|length=3225bp|location=Sequence derived from alignment at scaffold_62:7355..8602+ (Nannochloropsis oceanica)
ATGCTCGCGGCCAAGACATTGACCAAATCCACTTCTTCTTTCCCTCCCTC
CTTCCCTCCCCATCACCCACCCGGAGGCATGAACCTCAGTGGGGTCAATG
GACAGTTCTTCCGCATCCTCCAAGGCGTGGCCAGCACCTTCGGGCTCGAT
CTTCAGGATGTCCTCCACCTGGAGCCAGAGGTGTACGCAGCACTGTGTGA
GGGGAATGGAAGGAACGAGCGGAGAGGGACCGCGGGAGGGGCCCCGCGCG
AGGTGCCCATGTACATCAAGGCCCTGGACTGCGAGGCGTTCGCCGTCTCT
CGACGTGTGCTTTGCCAGGGGGAGAGCAGCTACACCTGCAACGAGGTGTT
TTCCTCCATGTTTGCAACCAAGGCCATGGCTGAACGGAGTCCGGAGCGAG
CGACGGGTATTGATATCTGGCTAGGCTGCATCGATTCGGAGGACCGCAAG
GAGTTTCTGCATTCCTTCCTCTCCACCCTTCTCGCCTCCCCCTCCCCCTG
CACCGAGACGGCCGGAATCTTCAAGGTACGTGTGGAGGAGAGGGAGAAAA
AGGTGGGAAAAGAAGGATGGAAAAAAGGAGGGAGAGAAGGAAAGCGCGGA
GGAGTGAGAGGGAGTAGAACGGATGCTCGTCACGAAACAAAGTGAATGCT
CGCGGCCAAGACATTGACCAAATCCACTTCTTCTTTCCCTCCCTCCTTCC
CTCCCCATCACCCACCCGGAGGCATGAACCTCAGTGGGGTCAATGGACAG
TTCTTCCGCATCCTCCAAGGCGTGGCCAGCACCTTCGGGCTCGATCTTCA
GGATGTCCTCCACCTGGAGCCAGAGGTGTACGCAGCACTGTGTGAGGGGA
ATGGAAGGAACGAGCGGAGAGGGACCGCGGGAGGGGCCCCGCGCGAGGTG
CCCATGTACATCAAGGCCCTGGACTGCGAGGCGTTCGCCGTCTCTCGACG
TGTGCTTTGCCAGGGGGAGAGCAGCTACACCTGCAACGAGGTGTTTTCCT
CCATGTTTGCAACCAAGGCCATGGCTGAACGGAGTCCGGAGCGAGCGACG
GGTATTGATATCTGGCTAGGCTGCATCGATTCGGAGGACCGCAAGGAGTT
TCTGCATTCCTTCCTCTCCACCCTTCTCGCCTCCCCCTCCCCCTGCACCG
AGACGGCCGGAATCTTCAAGGTACGTGTGGAGGAGAGGGAGAAAAAGGTG
GGAAAAGAAGGATGGAAAAAAGGAGGGAGAGAAGGAAAGCGCGGAGGAGT
GAGAGGGAGTAGAACGGATGCTCGTCACGAAACAAAGTGAATGCTCGCGG
CCAAGACATTGACCAAATCCACTTCTTCTTTCCCTCCCTCCTTCCCTCCC
CATCACCCACCCGGAGGCATGAACCTCAGTGGGGTCAATGGACAGTTCTT
CCGCATCCTCCAAGGCGTGGCCAGCACCTTCGGGCTCGATCTTCAGGATG
TCCTCCACCTGGAGCCAGAGGTGTACGCAGCACTGTGTGAGGGGAATGGA
AGGAACGAGCGGAGAGGGACCGCGGGAGGGGCCCCGCGCGAGGTGCCCAT
GTACATCAAGGCCCTGGACTGCGAGGCGTTCGCCGTCTCTCGACGTGTGC
TTTGCCAGGGGGAGAGCAGCTACACCTGCAACGAGGTGTTTTCCTCCATG
TTTGCAACCAAGGCCATGGCTGAACGGAGTCCGGAGCGAGCGACGGGTAT
TGATATCTGGCTAGGCTGCATCGATTCGGAGGACCGCAAGGAGTTTCTGC
ATTCCTTCCTCTCCACCCTTCTCGCCTCCCCCTCCCCCTGCACCGAGACG
GCCGGAATCTTCAAGGTACGTGTGGAGGAGAGGGAGAAAAAGGTGGGAAA
AGAAGGATGGAAAAAAGGAGGGAGAGAAGGAAAGCGCGGAGGAGTGAGAG
GGAGTAGAACGGATGCTCGTCACGAAACAAAGTGAATGCTCGCGGCCAAG
ACATTGACCAAATCCACTTCTTCTTTCCCTCCCTCCTTCCCTCCCCATCA
CCCACCCGGAGGCATGAACCTCAGTGGGGTCAATGGACAGTTCTTCCGCA
TCCTCCAAGGCGTGGCCAGCACCTTCGGGCTCGATCTTCAGGATGTCCTC
CACCTGGAGCCAGAGGTGTACGCAGCACTGTGTGAGGGGAATGGAAGGAA
CGAGCGGAGAGGGACCGCGGGAGGGGCCCCGCGCGAGGTGCCCATGTACA
TCAAGGCCCTGGACTGCGAGGCGTTCGCCGTCTCTCGACGTGTGCTTTGC
CAGGGGGAGAGCAGCTACACCTGCAACGAGGTGTTTTCCTCCATGTTTGC
AACCAAGGCCATGGCTGAACGGAGTCCGGAGCGAGCGACGGGTATTGATA
TCTGGCTAGGCTGCATCGATTCGGAGGACCGCAAGGAGTTTCTGCATTCC
TTCCTCTCCACCCTTCTCGCCTCCCCCTCCCCCTGCACCGAGACGGCCGG
AATCTTCAAGGTACGTGTGGAGGAGAGGGAGAAAAAGGTGGGAAAAGAAG
GATGGAAAAAAGGAGGGAGAGAAGGAAAGCGCGGAGGAGTGAGAGGGAGT
AGAACGGATGCTCGTCACGAAACAAAGTGAATGCTCGCGGCCAAGACATT
GACCAAATCCACTTCTTCTTTCCCTCCCTCCTTCCCTCCCCATCACCCAC
CCGGAGGCATGAACCTCAGTGGGGTCAATGGACAGTTCTTCCGCATCCTC
CAAGGCGTGGCCAGCACCTTCGGGCTCGATCTTCAGGATGTCCTCCACCT
GGAGCCAGAGGTGTACGCAGCACTGTGTGAGGGGAATGGAAGGAACGAGC
GGAGAGGGACCGCGGGAGGGGCCCCGCGCGAGGTGCCCATGTACATCAAG
GCCCTGGACTGCGAGGCGTTCGCCGTCTCTCGACGTGTGCTTTGCCAGGG
GGAGAGCAGCTACACCTGCAACGAGGTGTTTTCCTCCATGTTTGCAACCA
AGGCCATGGCTGAACGGAGTCCGGAGCGAGCGACGGGTATTGATATCTGG
CTAGGCTGCATCGATTCGGAGGACCGCAAGGAGTTTCTGCATTCCTTCCT
CTCCACCCTTCTCGCCTCCCCCTCCCCCTGCACCGAGACGGCCGGAATCT
TCAAGGTACGTGTGGAGGAGAGGGAGAAAAAGGTGGGAAAAGAAGGATGG
AAAAAAGGAGGGAGAGAAGGAAAGCGCGGAGGAGTGAGAGGGAGTAGAAC
GGATGCTCGTCACGAAACAAAGTGA

Synonyms

Publications