jgi.p|Nanoce1779_2|379669, mRNA_10607 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|379669
Unique NamemRNA_10607
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length812
Alignment locationscaffold_62:6356..8585 -

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Properties
Property NameValue
TranscriptId379755
TrackFilteredModels2
ProteinId379669
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_62supercontigscaffold_62:6356..8585 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|379669gene_10607Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|379669mRNA_10607-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10607CDS_10607Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10607 ID=mRNA_10607|Name=jgi.p|Nanoce1779_2|379669|organism=Nannochloropsis oceanica|type=mRNA|length=812bp
GCTTGAGGGCTTGGGAACATTGGCCTTCCTCTTTTCACTTTGTTTCGTGA
CGAGCATCCGTTCTACTCCCTCTCACTCCTCCGCGCTTTCCTTCTCTCCC
TCCTTTTTTCCATCCTTCTTTTCCCACCTTTTTCTCCCTCTCCTCCACAC
GTACCTTGAAGATTCCGGCCGTCTCGGTGCAGGGGGAGGGGGAGGCGAGA
AGGGTGGAGAGGAAGGAATGCAGAAACTCCTTGCGGTCCTCCGAATCGAT
GCAGCTGAGGAGGGGAAAAATTCATGCAATGCAGGGAGGGTGGAGGAGGA
AGATCCCTGTTGCTGTTGCTGCTGTTGCTGTTGCTGATGATCCAGGGACT
GTTGATAGCTGCGTTGTTGGTGCAGCTGCGGCTCATGATGCACCAGCCCA
AGCTCTCCCTCCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCA
GTGCGCCTGCCCTCCTCCTCCTCCTCCTCGTCCGTCCACAGAGGAGACCG
AGGCCGAGGCAAAGGGAGGGGGATGGGTAATGAGTGGCTGTGGGGCGGGA
GGGAGGAGCAGTCGGAGTGGAGGGAGGAGTCCAGGTCGGAATTGTGGCAG
TCACTGTCGGTTCCGGTCCCGTGGGCAGTGCCAGCATGTAGGAGACCAAG
GGCCGTCCCCGTCCCCGGACTTGCTCCACACAATTAAGGCCTAGGCGGAG
GCATCGCGTGCTGCAAAGGAGGGAGGGAGGGGGGAAGGAAGAGGGAGGGT
GAGAAAGGCGAGGAGGAGGGGGCGGCACGCGAGCGAGGAGGAGGGAGGGC
TTTGGACTCAAG
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protein sequence of jgi.p|Nanoce1779_2|379669

>mRNA_10607-protein ID=mRNA_10607-protein|Name=jgi.p|Nanoce1779_2|379669|organism=Nannochloropsis oceanica|type=polypeptide|length=138bp
MQCREGGGGRSLLLLLLLLLLMIQGLLIAALLVQLRLMMHQPKLSLLLLL
LLLLLLLLPVRLPSSSSSSSVHRGDRGRGKGRGMGNEWLWGGREEQSEWR
EESRSELWQSLSVPVPWAVPACRRPRAVPVPGLAPHN*
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mRNA from alignment at scaffold_62:6356..8585-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10607 ID=mRNA_10607|Name=jgi.p|Nanoce1779_2|379669|organism=Nannochloropsis oceanica|type=mRNA|length=2230bp|location=Sequence derived from alignment at scaffold_62:6356..8585- (Nannochloropsis oceanica)
GCTTGAGGGCTTGGGAACATTGGCCTTCCTCTTTTCACTTTGTTTCGTGA
CGAGCATCCGTTCTACTCCCTCTCACTCCTCCGCGCTTTCCTTCTCTCCC
TCCTTTTTTCCATCCTTCTTTTCCCACCTTTTTCTCCCTCTCCTCCACAC
GTACCTTGAAGATTCCGGCCGTCTCGGTGCAGGGGGAGGGGGAGGCGAGA
AGGGTGGAGAGGAAGGAATGCAGAAACTCCTTGCGGTCCTCCGAATCGAT
GCAGCTGAGGAGGGAGGGAGGGAGGGAGGGAGATTAAGGCTTCATGTACC
AAAGGGAAGGGGAGGACCTGGCGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAAGACTCACCCTAGCCAGATATCAATACCCGTCGCTCGCT
CCGGACTCCGTTCAGCCATGGCCTTGGTTGCAAACATGGAGGAAAACACC
TCGTTGCAGGTGTAGCTGCTCTCCCCCTGGCAAAGCACACGTCGAGAGAC
GGCGAACGCCTCGCAGTCCAGGGCCTGAGGGAGGGGGGGAAGGAGGAAGG
GAAGGCAAGATAGGTGCATGCTTGAGAACAAGGACTCCTTCCTTGAGAGC
TGGGGAAGAACAATGAGATTCGAACGTCATGCCCATATTCGAAAATTCAA
AAAGTCACCCTCCTCCCCTCCCTCCCTCCCCACCTTGATGTACATGGGCA
CCTCGCGCGGGGCCCCTCCCGCGGTCCCTCTCCGCTCGTTCCTTCCATTC
CCCTCACACAGTGCTGCGTACACCTCTGGCTCCAGGTGGAGGACATCCTG
AGGGAGGGAGGGAGGGCGGGAAGGAGGGAGGGGGTGGCATGGTCAGGGAC
ACAGCTATTAACGAGTGATTCGAGGCAAAGCATCACCATCCTCCTTCCCT
CGCTGCCTCCCTCCCTCCCTCCCTCTCTTCTTACCTGAAGATCGAGCCCG
AAGGTGCTGGCCACGCCTTGGAGGATGCGGAAGAACTGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGATGAGACCATGACCG
ATGGGAAGATAGTGAGAGGGATGGAAGGAGGGAGGGAGGGAGGGACTCAC
CTGTCCATTGACCCCACTGAGGTTCATGCCTCCGGGTGGGTGATGGGGAG
GGAAGGAGGGAGGGAAAGAAGAAGTGGATTTGGTCAATGTCTTGGCCGCG
AGCATTCCCCAGGCCCTGAGGACGATCAGAAGCTTGCGACGGTTGATATT
GGCTAAGTAAGGGAGAGGGAGGAAGGGAGGAAGGACGGGAGGGAAGGAGG
GAGGGAAGAGAAGAGTATAAGATTCTCGACTCGGAGAGCCGTGTGTGTGA
TGGATGTGGGTATATTTCATGCCCTCCTCCCTCCATCCCTCCCTCCCTCA
CCAGTCCGCATGGGATCGAGGAAAAATTCATGCAATGCAGGGAGGGTGGA
GGAGGAAGATCCCTGTTGCTGTTGCTGCTGTTGCTGTTGCTGATGATCCA
GGGACTGTTGATAGCTGCGTTGTTGGTGCAGCTGCGGCTCATGATGCACC
AGCCCAAGCTCTCCCTCCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCCAGTGCGCCTGCCCTCCTCCTCCTCCTCCTCGTCCGTCCACAGAGG
AGACCGAGGCCGAGGCAAAGGGAGGGGGATGGGTAATGTGCGGGGAGGAG
GGAGGAAGGGAGGAGTGGCTGTGGGGCGGGAGGGAGGAGCAGTCGGAGTG
GAGGGAGGAGTCCAGGTCGGAATTGTGGCAGTCACTGTCGGTTCCGGTCC
CGTGGGCAGGCTGGGGGAGAGAGGGAGGGAGGTAGGGAGGGGGGGAGAGG
GAGGGGATAGATGAGGGCAGGCGCTTTGGTACGCGGTAAAAGGAAGGAAG
GAGCGAGGGAGGGAGGGAGGGAGGGAGGGAAATAGTGGCCAAAAAGACCT
TATTTATCCTCATCGCTCTCACGAATTACTCACTGCAATTGCATCCCCTC
CTTCCCTCCCGCCCTCCCGCCCTCCCGCCCTCCCTCCTGCCCTTACTGCC
AGCATGTAGGAGACCAAGGGCCGTCCCCGTCCCCGGACTTGCTCCACACA
ATTAAGGCCTAGGCGGAGGCATCGCGTGCTGCAAAGGAGGGAGGGAGGGG
GGAAGGAAGAGGGAGGGTGAGAAAGGCGAGGAGGAGGGGGCGGCACGCGA
GCGAGGAGGAGGGAGGGCTTTGGACTCAAG
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Coding sequence (CDS) from alignment at scaffold_62:6356..8585-

>mRNA_10607 ID=mRNA_10607|Name=jgi.p|Nanoce1779_2|379669|organism=Nannochloropsis oceanica|type=CDS|length=1242bp|location=Sequence derived from alignment at scaffold_62:6356..8585- (Nannochloropsis oceanica)
TGCCAGCATGTAGGAGACCAAGGGCCGTCCCCGTCCCCGGACTTGCTCCA
CACAATTAAGAGTGGCTGTGGGGCGGGAGGGAGGAGCAGTCGGAGTGGAG
GGAGGAGTCCAGGTCGGAATTGTGGCAGTCACTGTCGGTTCCGGTCCCGT
GGGCAGATGCAATGCAGGGAGGGTGGAGGAGGAAGATCCCTGTTGCTGTT
GCTGCTGTTGCTGTTGCTGATGATCCAGGGACTGTTGATAGCTGCGTTGT
TGGTGCAGCTGCGGCTCATGATGCACCAGCCCAAGCTCTCCCTCCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCAGTGCGCCTGCCCTCCTC
CTCCTCCTCCTCGTCCGTCCACAGAGGAGACCGAGGCCGAGGCAAAGGGA
GGGGGATGGGTAATTGCCAGCATGTAGGAGACCAAGGGCCGTCCCCGTCC
CCGGACTTGCTCCACACAATTAAGAGTGGCTGTGGGGCGGGAGGGAGGAG
CAGTCGGAGTGGAGGGAGGAGTCCAGGTCGGAATTGTGGCAGTCACTGTC
GGTTCCGGTCCCGTGGGCAGATGCAATGCAGGGAGGGTGGAGGAGGAAGA
TCCCTGTTGCTGTTGCTGCTGTTGCTGTTGCTGATGATCCAGGGACTGTT
GATAGCTGCGTTGTTGGTGCAGCTGCGGCTCATGATGCACCAGCCCAAGC
TCTCCCTCCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCAGTG
CGCCTGCCCTCCTCCTCCTCCTCCTCGTCCGTCCACAGAGGAGACCGAGG
CCGAGGCAAAGGGAGGGGGATGGGTAATTGCCAGCATGTAGGAGACCAAG
GGCCGTCCCCGTCCCCGGACTTGCTCCACACAATTAAGAGTGGCTGTGGG
GCGGGAGGGAGGAGCAGTCGGAGTGGAGGGAGGAGTCCAGGTCGGAATTG
TGGCAGTCACTGTCGGTTCCGGTCCCGTGGGCAGATGCAATGCAGGGAGG
GTGGAGGAGGAAGATCCCTGTTGCTGTTGCTGCTGTTGCTGTTGCTGATG
ATCCAGGGACTGTTGATAGCTGCGTTGTTGGTGCAGCTGCGGCTCATGAT
GCACCAGCCCAAGCTCTCCCTCCTGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCCAGTGCGCCTGCCCTCCTCCTCCTCCTCCTCGTCCGTCCAC
AGAGGAGACCGAGGCCGAGGCAAAGGGAGGGGGATGGGTAAT
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Synonyms
Publications