jgi.p|Nanoce1779_2|575164, mRNA_1059 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575164
Unique NamemRNA_1059
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length992
Alignment locationscaffold_2:1116775..1118140 -

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Properties
Property NameValue
TranscriptId575250
TrackFilteredModels2
ProteinId575164
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1116775..1118140 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575164gene_1059Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575164mRNA_1059-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1059CDS_1059Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1059 ID=mRNA_1059|Name=jgi.p|Nanoce1779_2|575164|organism=Nannochloropsis oceanica|type=mRNA|length=992bp
ACAGAGCCAAACAAGTCGTAATAGCCATGACTGTCGTCGATCTCAAGAAT
ATGACTGTGCCCGAGGATGTGATAAAGGAGCTGGGGGACAAAATTGCGGA
GCACCCCACTCTCAGCCACCATTCCTCCCCTGCCGTGCTGTCTCGGATGC
TCCTGGCCCGGCACTTGAGCGTGCAAGACGCCTACGTGCTATGGGAGGCC
TGGGCGGCCTGGCGTGAGGAGCAACAGCCTCACCTGATTGAAGAGGCACA
TGTCGCCCCGCAGCTAGCCGTCCAAACTGTTTCGATTGCTGGGCAGGACA
AGAATGGAAGAGCTTGTGTCCTGCTACGTACCCGTAACCACATTCCCGGC
CAGTTCCCTTTGGAGGAAATGCTACGACTCACGATCTACGTGCTCGAGAC
GTCCACAACACGATCGGTCAAGACGTCTGGAACGGGCTACATCACGGCAG
TATGGGACTGCCAGGGCCAAGGATACCGTAACCTGGATGCCGCACTCGCC
ACGGCCAAGCCGGGGATCATTTCCATTATGAAGGACTACTACCCGGAATG
CCTGCAGTCCCTCCTCATCGTCAACAGCAACCTGATATTCCGCATCTTCT
GGAAGATAATCTACCCCTTTATTGACGAACGCACGCGAACAAAGATTTTT
ATGTTGCCGAACGATGAGGCCTTGCTGGATCATTTCCACCCTCATGAGCT
TCCGCCGGACTTCGCGCATTTGGCGACCGAGGAACGGGAGCGCAGAAAGG
GAGGAGCTGAAGAAGGGACATAGACTGTGTGATCTTTGGTAAATCATGTA
GATCTAACGTGCGAGGGGCGATGGGGATGGAAAGATTCACGTGAGGGGTT
GGGATGAGTCGGTGGGGTAATGACAGGGTGAAGTTTCAAATGATGAAATT
TTTAGTGGAAATGCTTTTATTTGACCATTTCTGTGGCGAACGTACTATGT
TTGTGGTCAACAAACGAAGTAAGTGTGCCTGTGTTCTTGGTG
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protein sequence of jgi.p|Nanoce1779_2|575164

>mRNA_1059-protein ID=mRNA_1059-protein|Name=jgi.p|Nanoce1779_2|575164|organism=Nannochloropsis oceanica|type=polypeptide|length=249bp
MTVVDLKNMTVPEDVIKELGDKIAEHPTLSHHSSPAVLSRMLLARHLSVQ
DAYVLWEAWAAWREEQQPHLIEEAHVAPQLAVQTVSIAGQDKNGRACVLL
RTRNHIPGQFPLEEMLRLTIYVLETSTTRSVKTSGTGYITAVWDCQGQGY
RNLDAALATAKPGIISIMKDYYPECLQSLLIVNSNLIFRIFWKIIYPFID
ERTRTKIFMLPNDEALLDHFHPHELPPDFAHLATEERERRKGGAEEGT*
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mRNA from alignment at scaffold_2:1116775..1118140-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1059 ID=mRNA_1059|Name=jgi.p|Nanoce1779_2|575164|organism=Nannochloropsis oceanica|type=mRNA|length=1366bp|location=Sequence derived from alignment at scaffold_2:1116775..1118140- (Nannochloropsis oceanica)
ACAGAGCCAAACAAGTCGTAATAGCCATGACTGTCGTCGATCTCAAGAAT
ATGACTGTGCCCGAGGATGTGATAAAGGAGCTGGGGGACAAAATTGCGGA
GCACCCCACTCTCAGCCACCATTCCTCCCCTGCCGTGCTGTCTCGGATGC
TCCTGGCCCGGCACTTGAGCGTGCAAGACGCCTACGTGCTATGGGAGGCC
TGGGCGGCCTGGCGTGAGGAGCAACAGCCTCACCTGATTGAAGAGGCACA
TGTCGCCCCGCAGCTAGCCGTCCAAACTGTTTCGATTGCTGGGCAGGACA
AGAATGGTGAGTGGTGAGATAAGTGAAGAAGTTGCCTAAGCATAGAAATT
TTGGAATTTTAAAGAGAGCCCATGTTGACCCGACAAGGCCGCCTCACATC
CCGACTACGCATCTAAACATTAGGAAGAGCTTGTGTCCTGCTACGTACCC
GTAACCACATTCCCGGCCAGTTCCCTTTGGAGGAAATGCTACGACTCACG
ATCTACGTGCTCGAGACGTCCACAACACGATCGGTCAAGACGTCTGGAAC
GGGCTACATCACGGCAGTATGGGACTGCCAGGGCCAAGGATACCGTAACC
TGGATGCCGCACTCGCCACGGCCAAGCCGGGGATCATTTCCATTATGAAG
GTACATGTTTGGAGGGAAGAGGATGAAAGTAAGGAGGGGATGGGAGAGGG
CAACGTGGATTGGAACCCTGTTTCCACGGGAGTGAAAATATAGTAATAAG
ATTTAAATGATGGTATTACTGTGAGTCTATATCACGCCCTTTATAAATAA
AAAACGTGTCCCAAACTATTTACTTTCCCCGTGCAACTAACGCCCTCCAT
CCCTCCTTCCCTCCTTTGATCTTTCCCTTCTTCCGCCCCTGACTCTTCCA
CCAACAGGACTACTACCCGGAATGCCTGCAGTCCCTCCTCATCGTCAACA
GCAACCTGATATTCCGCATCTTCTGGAAGATAATCTACCCCTTTATTGAC
GAACGCACGCGAACAAAGATTTTTATGTTGCCGAACGATGAGGCCTTGCT
GGATCATTTCCACCCTCATGAGCTTCCGCCGGACTTCGCGCATTTGGCGA
CCGAGGAACGGGAGCGCAGAAAGGGAGGAGCTGAAGAAGGGACATAGACT
GTGTGATCTTTGGTAAATCATGTAGATCTAACGTGCGAGGGGCGATGGGG
ATGGAAAGATTCACGTGAGGGGTTGGGATGAGTCGGTGGGGTAATGACAG
GGTGAAGTTTCAAATGATGAAATTTTTAGTGGAAATGCTTTTATTTGACC
ATTTCTGTGGCGAACGTACTATGTTTGTGGTCAACAAACGAAGTAAGTGT
GCCTGTGTTCTTGGTG
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Coding sequence (CDS) from alignment at scaffold_2:1116775..1118140-

>mRNA_1059 ID=mRNA_1059|Name=jgi.p|Nanoce1779_2|575164|organism=Nannochloropsis oceanica|type=CDS|length=2241bp|location=Sequence derived from alignment at scaffold_2:1116775..1118140- (Nannochloropsis oceanica)
GACTACTACCCGGAATGCCTGCAGTCCCTCCTCATCGTCAACAGCAACCT
GATATTCCGCATCTTCTGGAAGATAATCTACCCCTTTATTGACGAACGCA
CGCGAACAAAGATTTTTATGTTGCCGAACGATGAGGCCTTGCTGGATCAT
TTCCACCCTCATGAGCTTCCGCCGGACTTCGCGCATTTGGCGACCGAGGA
ACGGGAGCGCAGAAAGGGAGGAGCTGAAGAAGGGACATAGGAAGAGCTTG
TGTCCTGCTACGTACCCGTAACCACATTCCCGGCCAGTTCCCTTTGGAGG
AAATGCTACGACTCACGATCTACGTGCTCGAGACGTCCACAACACGATCG
GTCAAGACGTCTGGAACGGGCTACATCACGGCAGTATGGGACTGCCAGGG
CCAAGGATACCGTAACCTGGATGCCGCACTCGCCACGGCCAAGCCGGGGA
TCATTTCCATTATGAAGATGACTGTCGTCGATCTCAAGAATATGACTGTG
CCCGAGGATGTGATAAAGGAGCTGGGGGACAAAATTGCGGAGCACCCCAC
TCTCAGCCACCATTCCTCCCCTGCCGTGCTGTCTCGGATGCTCCTGGCCC
GGCACTTGAGCGTGCAAGACGCCTACGTGCTATGGGAGGCCTGGGCGGCC
TGGCGTGAGGAGCAACAGCCTCACCTGATTGAAGAGGCACATGTCGCCCC
GCAGCTAGCCGTCCAAACTGTTTCGATTGCTGGGCAGGACAAGAATGGAC
TACTACCCGGAATGCCTGCAGTCCCTCCTCATCGTCAACAGCAACCTGAT
ATTCCGCATCTTCTGGAAGATAATCTACCCCTTTATTGACGAACGCACGC
GAACAAAGATTTTTATGTTGCCGAACGATGAGGCCTTGCTGGATCATTTC
CACCCTCATGAGCTTCCGCCGGACTTCGCGCATTTGGCGACCGAGGAACG
GGAGCGCAGAAAGGGAGGAGCTGAAGAAGGGACATAGGAAGAGCTTGTGT
CCTGCTACGTACCCGTAACCACATTCCCGGCCAGTTCCCTTTGGAGGAAA
TGCTACGACTCACGATCTACGTGCTCGAGACGTCCACAACACGATCGGTC
AAGACGTCTGGAACGGGCTACATCACGGCAGTATGGGACTGCCAGGGCCA
AGGATACCGTAACCTGGATGCCGCACTCGCCACGGCCAAGCCGGGGATCA
TTTCCATTATGAAGATGACTGTCGTCGATCTCAAGAATATGACTGTGCCC
GAGGATGTGATAAAGGAGCTGGGGGACAAAATTGCGGAGCACCCCACTCT
CAGCCACCATTCCTCCCCTGCCGTGCTGTCTCGGATGCTCCTGGCCCGGC
ACTTGAGCGTGCAAGACGCCTACGTGCTATGGGAGGCCTGGGCGGCCTGG
CGTGAGGAGCAACAGCCTCACCTGATTGAAGAGGCACATGTCGCCCCGCA
GCTAGCCGTCCAAACTGTTTCGATTGCTGGGCAGGACAAGAATGGACTAC
TACCCGGAATGCCTGCAGTCCCTCCTCATCGTCAACAGCAACCTGATATT
CCGCATCTTCTGGAAGATAATCTACCCCTTTATTGACGAACGCACGCGAA
CAAAGATTTTTATGTTGCCGAACGATGAGGCCTTGCTGGATCATTTCCAC
CCTCATGAGCTTCCGCCGGACTTCGCGCATTTGGCGACCGAGGAACGGGA
GCGCAGAAAGGGAGGAGCTGAAGAAGGGACATAGGAAGAGCTTGTGTCCT
GCTACGTACCCGTAACCACATTCCCGGCCAGTTCCCTTTGGAGGAAATGC
TACGACTCACGATCTACGTGCTCGAGACGTCCACAACACGATCGGTCAAG
ACGTCTGGAACGGGCTACATCACGGCAGTATGGGACTGCCAGGGCCAAGG
ATACCGTAACCTGGATGCCGCACTCGCCACGGCCAAGCCGGGGATCATTT
CCATTATGAAGATGACTGTCGTCGATCTCAAGAATATGACTGTGCCCGAG
GATGTGATAAAGGAGCTGGGGGACAAAATTGCGGAGCACCCCACTCTCAG
CCACCATTCCTCCCCTGCCGTGCTGTCTCGGATGCTCCTGGCCCGGCACT
TGAGCGTGCAAGACGCCTACGTGCTATGGGAGGCCTGGGCGGCCTGGCGT
GAGGAGCAACAGCCTCACCTGATTGAAGAGGCACATGTCGCCCCGCAGCT
AGCCGTCCAAACTGTTTCGATTGCTGGGCAGGACAAGAATG
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Synonyms
Publications