jgi.p|Nanoce1779_2|575161, mRNA_1058 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575161
Unique NamemRNA_1058
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length709
Alignment locationscaffold_2:1115598..1116405 +

Link to JBrowse

Properties
Property NameValue
TranscriptId575247
TrackFilteredModels2
ProteinId575161
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1115598..1116405 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575161gene_1058Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575161mRNA_1058-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1058CDS_1058Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1058 ID=mRNA_1058|Name=jgi.p|Nanoce1779_2|575161|organism=Nannochloropsis oceanica|type=mRNA|length=709bp
ACAGGTTTGCACTGGTGGGTACCTCGCGGGCATCTCCTGGAGATGAGGTC
CCACCTGCAATCAGCCAACTTGTAGGAGGCAAGCAGTGAGGAGGAACCCC
ACCATCAACCTTCAGCCCAGCCCAGCACCCTGTCCTCCGTCCCTCGTCTC
TAATGAATAGCGTAGAAGCCTATGGGTTTGCGGGTTGGGTTGGCACCTTT
GTTGTTTCCGGTCTCTTTCTCCTCTGGGCATATCTTCCGGAGGCATGGCT
GCACACATGGGGCATCACCTACTATCCGAACAAAGAGTGGGCCTTGTCGA
TACCCGCGTTTCTGTGCATGTCCTATATGCTGTCAGGGTTGGTGTATGTG
AGCCTGAATTTATTGAGTACCGCCCCTCTTTCTTCATACGAGACACTCAC
GGATCGATGGGCACGTCCACCACCCGTATACGTCGAAGATGGTATGACAT
CAGGGATGAAGGAGAATAAGAAGGAACGGGATGGAGGAAGTCAGGAGGAG
CGGCAGGTACCGCCACCGCTGCGGCCGCCGCCGCCATCGGTGCCGCACTT
TGCTGACTTGGACATTGGCGTGGTTAATGATTATTTGTACGGGGACAAGG
GGAAAGGGGGAGATTGAACGAGAGGGAAACGAGGATAGATTGGATGAGGA
AAGTAACTGGGGTTTTGGTTGAAGATGAAAAATGGGGACAAGATGTACAG
ATTTCGTGT
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protein sequence of jgi.p|Nanoce1779_2|575161

>mRNA_1058-protein ID=mRNA_1058-protein|Name=jgi.p|Nanoce1779_2|575161|organism=Nannochloropsis oceanica|type=polypeptide|length=155bp
MNSVEAYGFAGWVGTFVVSGLFLLWAYLPEAWLHTWGITYYPNKEWALSI
PAFLCMSYMLSGLVYVSLNLLSTAPLSSYETLTDRWARPPPVYVEDGMTS
GMKENKKERDGGSQEERQVPPPLRPPPPSVPHFADLDIGVVNDYLYGDKG
KGGD*
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mRNA from alignment at scaffold_2:1115598..1116405+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1058 ID=mRNA_1058|Name=jgi.p|Nanoce1779_2|575161|organism=Nannochloropsis oceanica|type=mRNA|length=808bp|location=Sequence derived from alignment at scaffold_2:1115598..1116405+ (Nannochloropsis oceanica)
ACAGGTTTGCACTGGTGGGTACCTCGCGGGCATCTCCTGGAGATGAGGTC
CCACCTGCAATCAGCCAACTTGTAGGAGGCAAGCAGTGAGGAGGAACCCC
ACCATCAACCTTCAGCCCAGCCCAGCACCCTGTCCTCCGTCCCTCGTCTC
TAATGAATAGCGTAGAAGCCTATGGGTTTGCGGGTTGGGTTGGCACCTTT
GTTGTTTCCGGTAAGTCGTCTTGGTTGGGTCGCCTCCGTTCCCCCCACTT
CCACGCCTACTTTCCCTGTTTTATTCCCCTCCCTGCCACCCACTTGTCCC
CACTACCAGGTCTCTTTCTCCTCTGGGCATATCTTCCGGAGGCATGGCTG
CACACATGGGGCATCACCTACTATCCGAACAAAGAGTGGGCCTTGTCGAT
ACCCGCGTTTCTGTGCATGTCCTATATGCTGTCAGGGTTGGTGTATGTGA
GCCTGAATTTATTGAGTACCGCCCCTCTTTCTTCATACGAGACACTCACG
GATCGATGGGCACGTCCACCACCCGTATACGTCGAAGATGGTATGACATC
AGGGATGAAGGAGAATAAGAAGGAACGGGATGGAGGAAGTCAGGAGGAGC
GGCAGGTACCGCCACCGCTGCGGCCGCCGCCGCCATCGGTGCCGCACTTT
GCTGACTTGGACATTGGCGTGGTTAATGATTATTTGTACGGGGACAAGGG
GAAAGGGGGAGATTGAACGAGAGGGAAACGAGGATAGATTGGATGAGGAA
AGTAACTGGGGTTTTGGTTGAAGATGAAAAATGGGGACAAGATGTACAGA
TTTCGTGT
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Coding sequence (CDS) from alignment at scaffold_2:1115598..1116405+

>mRNA_1058 ID=mRNA_1058|Name=jgi.p|Nanoce1779_2|575161|organism=Nannochloropsis oceanica|type=CDS|length=930bp|location=Sequence derived from alignment at scaffold_2:1115598..1116405+ (Nannochloropsis oceanica)
ATGAATAGCGTAGAAGCCTATGGGTTTGCGGGTTGGGTTGGCACCTTTGT
TGTTTCCGGTCTCTTTCTCCTCTGGGCATATCTTCCGGAGGCATGGCTGC
ACACATGGGGCATCACCTACTATCCGAACAAAGAGTGGGCCTTGTCGATA
CCCGCGTTTCTGTGCATGTCCTATATGCTGTCAGGGTTGGTGTATGTGAG
CCTGAATTTATTGAGTACCGCCCCTCTTTCTTCATACGAGACACTCACGG
ATCGATGGGCACGTCCACCACCCGTATACGTCGAAGATGGTATGACATCA
GGGATGAAGGAGAATAAGAAGGAACGGGATGGAGGAAGTCAGGAGGAGCG
GCAGGTACCGCCACCGCTGCGGCCGCCGCCGCCATCGGTGCCGCACTTTG
CTGACTTGGACATTGGCGTGGTTAATGATTATTTGTACGGGGACAAGGGG
AAAGGGGGAGATTGAATGAATAGCGTAGAAGCCTATGGGTTTGCGGGTTG
GGTTGGCACCTTTGTTGTTTCCGGTCTCTTTCTCCTCTGGGCATATCTTC
CGGAGGCATGGCTGCACACATGGGGCATCACCTACTATCCGAACAAAGAG
TGGGCCTTGTCGATACCCGCGTTTCTGTGCATGTCCTATATGCTGTCAGG
GTTGGTGTATGTGAGCCTGAATTTATTGAGTACCGCCCCTCTTTCTTCAT
ACGAGACACTCACGGATCGATGGGCACGTCCACCACCCGTATACGTCGAA
GATGGTATGACATCAGGGATGAAGGAGAATAAGAAGGAACGGGATGGAGG
AAGTCAGGAGGAGCGGCAGGTACCGCCACCGCTGCGGCCGCCGCCGCCAT
CGGTGCCGCACTTTGCTGACTTGGACATTGGCGTGGTTAATGATTATTTG
TACGGGGACAAGGGGAAAGGGGGAGATTGA
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Synonyms
Publications