jgi.p|Nanoce1779_2|575157, mRNA_1057 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575157
Unique NamemRNA_1057
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1415
Alignment locationscaffold_2:1113222..1115118 +

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Properties
Property NameValue
TranscriptId575243
TrackFilteredModels2
ProteinId575157
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1113222..1115118 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575157gene_1057Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575157mRNA_1057-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1057CDS_1057Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1057 ID=mRNA_1057|Name=jgi.p|Nanoce1779_2|575157|organism=Nannochloropsis oceanica|type=mRNA|length=1415bp
ACAGGACGAAACCAAACGGCTCGAGGAGGACGGCAAGAAGCTTACCAGTG
CCCAATTTGAGTCGGTGGCCGCGGCATAATCAAATTTGTTCGGCTGCCGC
TGTCCGCCCCCATACCTCTCCCCGTTCCGAGAACGTGCAAGTCGGCCCGG
CAGCAACCTATCACTGAGAGCAGTACAAGAAACATGCCTTCAACCTCACC
AACACACCAGACTTCAGGCGCGATTCGTCTCAGGTTTCTTTTCGCCAATC
ACGACGGAGTGGCGGTAGAACTCTCTGTCTTGCCCTCGACCAGGGTTGTG
GACGTGAAGCATCGGCTCCGCGAAGTCTGGCCTCCCGCCCTGCTGAACGC
GGAACGGAAAAACATTTCCGGCAGCAATACCACAAGCAATATGCGCACGC
CGAACGGCATCCTATCGCACAACCACAACGATTCCAATTCCGATTACCAA
GAAGAATATTGGCCGGAATCGGAAGACGAGGATGGCGTGTACGAAGACGA
GGGAGAGGACGACGACGATGGAACGGTGGCGTCGTGTTCTGGAGCTGGAC
TGTCGGCGAGTCGGTGGAGGGCCCCGGAAGTGGATCGTTTGCGGTTAATT
TGTATGGGGCAGGGTTTGCTGAAGGACAGTCGGACATTGCAAGAGTGCCA
CGTTCCCGCTTTTATCACCCACCCGACGCCTGTCAATGTCTCCATTCGCC
CTCCGCCACCACGGCCGCCGGGGAAAGGGAAGAAGGGCCTGCAGAAAAAG
GAGAAAGAAAAGATGCTTCACGATGAGGAGGGGGGGAGTGAGCGCGTGGG
GGCGGTGGTCCCGAGGGGCTGCGTGTCATGCCTCATCATGTAAACGAAGA
GAAGGAAGACTCGGAGGAATGTGAGAGGCATTACTAGAAGGGTGGCGCGT
TTTTGATATGCTTTGGGTGTGTGTGACATGCGTGCGTGCCTTGCACCCAC
ACTGTCCCTCTCCCCTGTGCCCCACACGGCCGCGGCACAACCTGTCCGAT
AAATCGCACCACTAGAAAAATCATCCTGGTCTGCATGTGCGTGTGTACGG
AGACAAGATTGTCAGGGGTGGATTACTTAGGATGCACACTACAAGATAAT
GTCGACCTACAAATGCATAAGAAGATAGCAGGACCTGCCAACCCTATCCC
TAACAGCAGAGTGTCATTCTGCAGGTGGAAAGCGGCCATTTGGGGCCGAG
AAGAGGGTGGGAATGGAGAACGAGAAGGGAAGCAGTAGCTGTGAATGTAA
AGAGAGCAAGAGACATCGTGTGTCGGTACTATTCAAATAAAGGAAGTAGA
AGGAAATTAAAAGTTCAAGAGAATGAGTGGGGAGCTCTAGATAGACGGAC
GACAAATCAGAGCATCATCATTGTCATATTACAAAGCCATAACAAGGTTA
CGATGTGTCAAGAAT
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protein sequence of jgi.p|Nanoce1779_2|575157

>mRNA_1057-protein ID=mRNA_1057-protein|Name=jgi.p|Nanoce1779_2|575157|organism=Nannochloropsis oceanica|type=polypeptide|length=220bp
MPSTSPTHQTSGAIRLRFLFANHDGVAVELSVLPSTRVVDVKHRLREVWP
PALLNAERKNISGSNTTSNMRTPNGILSHNHNDSNSDYQEEYWPESEDED
GVYEDEGEDDDDGTVASCSGAGLSASRWRAPEVDRLRLICMGQGLLKDSR
TLQECHVPAFITHPTPVNVSIRPPPPRPPGKGKKGLQKKEKEKMLHDEEG
GSERVGAVVPRGCVSCLIM*
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mRNA from alignment at scaffold_2:1113222..1115118+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1057 ID=mRNA_1057|Name=jgi.p|Nanoce1779_2|575157|organism=Nannochloropsis oceanica|type=mRNA|length=1897bp|location=Sequence derived from alignment at scaffold_2:1113222..1115118+ (Nannochloropsis oceanica)
ACAGGACGAAACCAAACGGCTCGAGGAGGACGGCAAGAAGCTTACCAGTG
CCCAATTTGAGTCGGTGGCCGCGGCATAATCAAATTTGTTCGGCTGCCGC
TGTCCGCCCCCATACCTCTCCCCGTTCCGAGAACGTGCAAGTCGGCCCGG
CAGCAACCTATCACTGAGAGCAGTACAAGAAACATGCCTTCAACCTCACC
AACACACCAGACTTCAGGCGCGATTCGTCTCAGGTACCCGCTTAAACGCA
TCAATGAATCTGCCCTTTGCCCTTCGCCGGTCATTCTGTACATGAGCTCG
CATGTATTCGTTTCCTTCACACAACAATCCCCTCGTCCACTCTCTCTCTC
TCACTACCTCCATTTTTACGTGCGTTTCTCAATGTGTCACCCGCACGATA
TCTTGGCGGTAAGTGTCTCACCTCCTATCCCTTGTCCCCCACTCTTCGCT
CCCCCAATCGGCGGCAGGTTTCTTTTCGCCAATCACGACGGAGTGGCGGT
AGAACTCTCTGTCTTGCCCTCGACCAGGGTTGTGGACGTGAAGCATCGGC
TCCGCGAAGTCTGGCCTCCCGCCCTGCTGAACGCGGAACGGAAAAACATT
TCCGGCAGCAATACCACAAGCAATATGCGCACGCCGAACGGCATCCTATC
GCACAACCACAACGATTCCAATTCCGATTACCAAGAAGAATATTGGCCGG
AATCGGAAGACGAGGATGGCGTGTACGAAGACGAGGGAGAGGACGACGAC
GATGGAACGGTGGCGTCGTGTTCTGGAGCTGGACTGTCGGCGAGTCGGTG
GAGGGCCCCGGAAGTGGATCGTTTGCGGTTAATTTGTATGGGGCAGGGTT
TGCTGAAGGACAGTCGGACATTGCAAGGTAATGATATCGGGGGTGGGCCG
AAAGGTGACGGAGAAGGGAAGGAGGGGGGATGTATGGATCTGGACACGCG
TAAAGATTACAGATGGTATGTAGGCCGATTCTCACTCTCTCTTTCTCGTG
ACGGATTTCAACAGACCTACCTTCTCACGCCCGCCCGTTGGTTCGTCCAT
CCATGCCACAACTACGCAGAGCTCTCTTTTGACTAATTAAACCCTCTACC
CTCTGACCTACACCAAAACATACAGAGTGCCACGTTCCCGCTTTTATCAC
CCACCCGACGCCTGTCAATGTCTCCATTCGCCCTCCGCCACCACGGCCGC
CGGGGAAAGGGAAGAAGGGCCTGCAGAAAAAGGAGAAAGAAAAGATGCTT
CACGATGAGGAGGGGGGGAGTGAGCGCGTGGGGGCGGTGGTCCCGAGGGG
CTGCGTGTCATGCCTCATCATGTAAACGAAGAGAAGGAAGACTCGGAGGA
ATGTGAGAGGCATTACTAGAAGGGTGGCGCGTTTTTGATATGCTTTGGGT
GTGTGTGACATGCGTGCGTGCCTTGCACCCACACTGTCCCTCTCCCCTGT
GCCCCACACGGCCGCGGCACAACCTGTCCGATAAATCGCACCACTAGAAA
AATCATCCTGGTCTGCATGTGCGTGTGTACGGAGACAAGATTGTCAGGGG
TGGATTACTTAGGATGCACACTACAAGATAATGTCGACCTACAAATGCAT
AAGAAGATAGCAGGACCTGCCAACCCTATCCCTAACAGCAGAGTGTCATT
CTGCAGGTGGAAAGCGGCCATTTGGGGCCGAGAAGAGGGTGGGAATGGAG
AACGAGAAGGGAAGCAGTAGCTGTGAATGTAAAGAGAGCAAGAGACATCG
TGTGTCGGTACTATTCAAATAAAGGAAGTAGAAGGAAATTAAAAGTTCAA
GAGAATGAGTGGGGAGCTCTAGATAGACGGACGACAAATCAGAGCATCAT
CATTGTCATATTACAAAGCCATAACAAGGTTACGATGTGTCAAGAAT
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Coding sequence (CDS) from alignment at scaffold_2:1113222..1115118+

>mRNA_1057 ID=mRNA_1057|Name=jgi.p|Nanoce1779_2|575157|organism=Nannochloropsis oceanica|type=CDS|length=1980bp|location=Sequence derived from alignment at scaffold_2:1113222..1115118+ (Nannochloropsis oceanica)
ATGCCTTCAACCTCACCAACACACCAGACTTCAGGCGCGATTCGTCTCAG
GTTTCTTTTCGCCAATCACGACGGAGTGGCGGTAGAACTCTCTGTCTTGC
CCTCGACCAGGGTTGTGGACGTGAAGCATCGGCTCCGCGAAGTCTGGCCT
CCCGCCCTGCTGAACGCGGAACGGAAAAACATTTCCGGCAGCAATACCAC
AAGCAATATGCGCACGCCGAACGGCATCCTATCGCACAACCACAACGATT
CCAATTCCGATTACCAAGAAGAATATTGGCCGGAATCGGAAGACGAGGAT
GGCGTGTACGAAGACGAGGGAGAGGACGACGACGATGGAACGGTGGCGTC
GTGTTCTGGAGCTGGACTGTCGGCGAGTCGGTGGAGGGCCCCGGAAGTGG
ATCGTTTGCGGTTAATTTGTATGGGGCAGGGTTTGCTGAAGGACAGTCGG
ACATTGCAAGAGTGCCACGTTCCCGCTTTTATCACCCACCCGACGCCTGT
CAATGTCTCCATTCGCCCTCCGCCACCACGGCCGCCGGGGAAAGGGAAGA
AGGGCCTGCAGAAAAAGGAGAAAGAAAAGATGCTTCACGATGAGGAGGGG
GGGAGTGAGCGCGTGGGGGCGGTGGTCCCGAGGGGCTGCGTGTCATGCCT
CATCATGTAAATGCCTTCAACCTCACCAACACACCAGACTTCAGGCGCGA
TTCGTCTCAGGTTTCTTTTCGCCAATCACGACGGAGTGGCGGTAGAACTC
TCTGTCTTGCCCTCGACCAGGGTTGTGGACGTGAAGCATCGGCTCCGCGA
AGTCTGGCCTCCCGCCCTGCTGAACGCGGAACGGAAAAACATTTCCGGCA
GCAATACCACAAGCAATATGCGCACGCCGAACGGCATCCTATCGCACAAC
CACAACGATTCCAATTCCGATTACCAAGAAGAATATTGGCCGGAATCGGA
AGACGAGGATGGCGTGTACGAAGACGAGGGAGAGGACGACGACGATGGAA
CGGTGGCGTCGTGTTCTGGAGCTGGACTGTCGGCGAGTCGGTGGAGGGCC
CCGGAAGTGGATCGTTTGCGGTTAATTTGTATGGGGCAGGGTTTGCTGAA
GGACAGTCGGACATTGCAAGAGTGCCACGTTCCCGCTTTTATCACCCACC
CGACGCCTGTCAATGTCTCCATTCGCCCTCCGCCACCACGGCCGCCGGGG
AAAGGGAAGAAGGGCCTGCAGAAAAAGGAGAAAGAAAAGATGCTTCACGA
TGAGGAGGGGGGGAGTGAGCGCGTGGGGGCGGTGGTCCCGAGGGGCTGCG
TGTCATGCCTCATCATGTAAATGCCTTCAACCTCACCAACACACCAGACT
TCAGGCGCGATTCGTCTCAGGTTTCTTTTCGCCAATCACGACGGAGTGGC
GGTAGAACTCTCTGTCTTGCCCTCGACCAGGGTTGTGGACGTGAAGCATC
GGCTCCGCGAAGTCTGGCCTCCCGCCCTGCTGAACGCGGAACGGAAAAAC
ATTTCCGGCAGCAATACCACAAGCAATATGCGCACGCCGAACGGCATCCT
ATCGCACAACCACAACGATTCCAATTCCGATTACCAAGAAGAATATTGGC
CGGAATCGGAAGACGAGGATGGCGTGTACGAAGACGAGGGAGAGGACGAC
GACGATGGAACGGTGGCGTCGTGTTCTGGAGCTGGACTGTCGGCGAGTCG
GTGGAGGGCCCCGGAAGTGGATCGTTTGCGGTTAATTTGTATGGGGCAGG
GTTTGCTGAAGGACAGTCGGACATTGCAAGAGTGCCACGTTCCCGCTTTT
ATCACCCACCCGACGCCTGTCAATGTCTCCATTCGCCCTCCGCCACCACG
GCCGCCGGGGAAAGGGAAGAAGGGCCTGCAGAAAAAGGAGAAAGAAAAGA
TGCTTCACGATGAGGAGGGGGGGAGTGAGCGCGTGGGGGCGGTGGTCCCG
AGGGGCTGCGTGTCATGCCTCATCATGTAA
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Synonyms
Publications