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Properties
| Property Name | Value |
|---|
| TranscriptId | 575236 |
| Track | FilteredModels2 |
| ProteinId | 575150 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_2 | supercontig | scaffold_2:1109330..1110700 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1056 ID=mRNA_1056|Name=jgi.p|Nanoce1779_2|575150|organism=Nannochloropsis oceanica|type=mRNA|length=1371bp
TAAGGGGGGGGAGGGAGGGGAAAATCTTCGAAATTGCTGCTCAGCGATGC
AGATTTTGGTGGAGACCGCGTCGAATTTACAGTACAATAATGATGACCCT
GCGGCACTGCTTCACTTTGCCCTGAGAAAAGTATACTGCACACGCGGGCT
GTGGACGGAGTTTTGTGGATTGGTTACTGAGAGAGACAATGAGGGAGCAG
CAGCTCCAGCAGCAATTGTAGAAGGGGGGCTGTTGCCGGCGGTCTTGGTG
CCGGAGGGAGAGGAGGACAGAAATGTCGGGCTGGTTTCTCCCCAAGCAGT
GGCATCCAAGATCGAGGCAGGGAAGGAGGACCAGGAGGAGCTCCAACAGC
GGTATACACAGAAGGAGACGCAGGAGGAGAAAGTGAAGGAGGGGCAGTGC
CCACGACGGGTCATCCATAAAACCAATTATGGCACGCGAGTACCAGCACC
CGCATCAGAGTCTGCACCGACACCGACACCGGCATGGTGGTCGCTGGCGG
AGAGCAAAGGAAGCGAGATCCTGGGCTTTCTGGGGGCTGCTGCCTTTTTG
GTGCGTGTGCTGAAAGACCCGGTGGTTGTTCAAGCGGTCAATGCCGGGAA
ATGGGGAAGGGTCGAGCGATTCGCCGGGATGGTTTCGGGAGTGTTGGGGG
TTGTGTCGGAAGAGGACTCGTTACGGTCTTTGGCAGACGTGGGGGCATTA
CAAGAGGACTTGTACGAGGCTTTACAGGCAGTGCATGTAGTGAGGCAGAT
CATGGCGGCGACGACGCCCGCGGAGGTCTTGGCATCTGTGCCGCCGTCGC
ATTTTGCGGCGTTGGCCCCGCGGAGGAAGAGGAAGAGGGTGGCGAGGGTG
ATAAAGGGTGCGATGAGGGATGTTTTGATATGGGTGCGTTCCAGTGAGTT
GCCGGAACAGGCGACGTATCCTCATTTGGCTCCGTTGTGTGTGTATGCGA
CGGCGGGGATAGGGTATGAGGAAGAAACGGCGGACGATGGAGAGGATGAG
GAAGGGGAGGAAGAGAACGAGGAGCTGGATGAGCAGCAGGAGCAGCAGGA
GGAAGGGCAGGAGATGGTATTGTAACGGACGAGTCAGACAATCATTTCTC
ATACATAACCAAGACTGCGAGAGCAGCAATGAAGCAAACCAAGTAATTTG
GCATTTTTATCATATTTGTATATTTGATATACATATGTATATGAGTGGTG
GAGTACAGCGCGTGCACGCAAAAAGCTCGTACACGATCCAAGCACGATCC
AAACACGACCACAACCTAAAATATAGCCCGACCGAAAGCAAATCGAAATG
ACCCTTGGTTTATTTAACATGGTAGTCGAAAGAAACTGACTCCAAGAAGA
AAGTACACTAAATGAATGGGC back to topprotein sequence of jgi.p|Nanoce1779_2|575150 >mRNA_1056-protein ID=mRNA_1056-protein|Name=jgi.p|Nanoce1779_2|575150|organism=Nannochloropsis oceanica|type=polypeptide|length=343bp
MQILVETASNLQYNNDDPAALLHFALRKVYCTRGLWTEFCGLVTERDNEG
AAAPAAIVEGGLLPAVLVPEGEEDRNVGLVSPQAVASKIEAGKEDQEELQ
QRYTQKETQEEKVKEGQCPRRVIHKTNYGTRVPAPASESAPTPTPAWWSL
AESKGSEILGFLGAAAFLVRVLKDPVVVQAVNAGKWGRVERFAGMVSGVL
GVVSEEDSLRSLADVGALQEDLYEALQAVHVVRQIMAATTPAEVLASVPP
SHFAALAPRRKRKRVARVIKGAMRDVLIWVRSSELPEQATYPHLAPLCVY
ATAGIGYEEETADDGEDEEGEEENEELDEQQEQQEEGQEMVL* back to topmRNA from alignment at scaffold_2:1109330..1110700- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1056 ID=mRNA_1056|Name=jgi.p|Nanoce1779_2|575150|organism=Nannochloropsis oceanica|type=mRNA|length=1371bp|location=Sequence derived from alignment at scaffold_2:1109330..1110700- (Nannochloropsis oceanica)
TAAGGGGGGGGAGGGAGGGGAAAATCTTCGAAATTGCTGCTCAGCGATGC
AGATTTTGGTGGAGACCGCGTCGAATTTACAGTACAATAATGATGACCCT
GCGGCACTGCTTCACTTTGCCCTGAGAAAAGTATACTGCACACGCGGGCT
GTGGACGGAGTTTTGTGGATTGGTTACTGAGAGAGACAATGAGGGAGCAG
CAGCTCCAGCAGCAATTGTAGAAGGGGGGCTGTTGCCGGCGGTCTTGGTG
CCGGAGGGAGAGGAGGACAGAAATGTCGGGCTGGTTTCTCCCCAAGCAGT
GGCATCCAAGATCGAGGCAGGGAAGGAGGACCAGGAGGAGCTCCAACAGC
GGTATACACAGAAGGAGACGCAGGAGGAGAAAGTGAAGGAGGGGCAGTGC
CCACGACGGGTCATCCATAAAACCAATTATGGCACGCGAGTACCAGCACC
CGCATCAGAGTCTGCACCGACACCGACACCGGCATGGTGGTCGCTGGCGG
AGAGCAAAGGAAGCGAGATCCTGGGCTTTCTGGGGGCTGCTGCCTTTTTG
GTGCGTGTGCTGAAAGACCCGGTGGTTGTTCAAGCGGTCAATGCCGGGAA
ATGGGGAAGGGTCGAGCGATTCGCCGGGATGGTTTCGGGAGTGTTGGGGG
TTGTGTCGGAAGAGGACTCGTTACGGTCTTTGGCAGACGTGGGGGCATTA
CAAGAGGACTTGTACGAGGCTTTACAGGCAGTGCATGTAGTGAGGCAGAT
CATGGCGGCGACGACGCCCGCGGAGGTCTTGGCATCTGTGCCGCCGTCGC
ATTTTGCGGCGTTGGCCCCGCGGAGGAAGAGGAAGAGGGTGGCGAGGGTG
ATAAAGGGTGCGATGAGGGATGTTTTGATATGGGTGCGTTCCAGTGAGTT
GCCGGAACAGGCGACGTATCCTCATTTGGCTCCGTTGTGTGTGTATGCGA
CGGCGGGGATAGGGTATGAGGAAGAAACGGCGGACGATGGAGAGGATGAG
GAAGGGGAGGAAGAGAACGAGGAGCTGGATGAGCAGCAGGAGCAGCAGGA
GGAAGGGCAGGAGATGGTATTGTAACGGACGAGTCAGACAATCATTTCTC
ATACATAACCAAGACTGCGAGAGCAGCAATGAAGCAAACCAAGTAATTTG
GCATTTTTATCATATTTGTATATTTGATATACATATGTATATGAGTGGTG
GAGTACAGCGCGTGCACGCAAAAAGCTCGTACACGATCCAAGCACGATCC
AAACACGACCACAACCTAAAATATAGCCCGACCGAAAGCAAATCGAAATG
ACCCTTGGTTTATTTAACATGGTAGTCGAAAGAAACTGACTCCAAGAAGA
AAGTACACTAAATGAATGGGC back to topCoding sequence (CDS) from alignment at scaffold_2:1109330..1110700- >mRNA_1056 ID=mRNA_1056|Name=jgi.p|Nanoce1779_2|575150|organism=Nannochloropsis oceanica|type=CDS|length=1029bp|location=Sequence derived from alignment at scaffold_2:1109330..1110700- (Nannochloropsis oceanica)
ATGCAGATTTTGGTGGAGACCGCGTCGAATTTACAGTACAATAATGATGA
CCCTGCGGCACTGCTTCACTTTGCCCTGAGAAAAGTATACTGCACACGCG
GGCTGTGGACGGAGTTTTGTGGATTGGTTACTGAGAGAGACAATGAGGGA
GCAGCAGCTCCAGCAGCAATTGTAGAAGGGGGGCTGTTGCCGGCGGTCTT
GGTGCCGGAGGGAGAGGAGGACAGAAATGTCGGGCTGGTTTCTCCCCAAG
CAGTGGCATCCAAGATCGAGGCAGGGAAGGAGGACCAGGAGGAGCTCCAA
CAGCGGTATACACAGAAGGAGACGCAGGAGGAGAAAGTGAAGGAGGGGCA
GTGCCCACGACGGGTCATCCATAAAACCAATTATGGCACGCGAGTACCAG
CACCCGCATCAGAGTCTGCACCGACACCGACACCGGCATGGTGGTCGCTG
GCGGAGAGCAAAGGAAGCGAGATCCTGGGCTTTCTGGGGGCTGCTGCCTT
TTTGGTGCGTGTGCTGAAAGACCCGGTGGTTGTTCAAGCGGTCAATGCCG
GGAAATGGGGAAGGGTCGAGCGATTCGCCGGGATGGTTTCGGGAGTGTTG
GGGGTTGTGTCGGAAGAGGACTCGTTACGGTCTTTGGCAGACGTGGGGGC
ATTACAAGAGGACTTGTACGAGGCTTTACAGGCAGTGCATGTAGTGAGGC
AGATCATGGCGGCGACGACGCCCGCGGAGGTCTTGGCATCTGTGCCGCCG
TCGCATTTTGCGGCGTTGGCCCCGCGGAGGAAGAGGAAGAGGGTGGCGAG
GGTGATAAAGGGTGCGATGAGGGATGTTTTGATATGGGTGCGTTCCAGTG
AGTTGCCGGAACAGGCGACGTATCCTCATTTGGCTCCGTTGTGTGTGTAT
GCGACGGCGGGGATAGGGTATGAGGAAGAAACGGCGGACGATGGAGAGGA
TGAGGAAGGGGAGGAAGAGAACGAGGAGCTGGATGAGCAGCAGGAGCAGC
AGGAGGAAGGGCAGGAGATGGTATTGTAA back to top
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