jgi.p|Nanoce1779_2|575144, mRNA_1052 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|575144
Unique Name	mRNA_1052
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1139
Alignment location	scaffold_2:1101672..1103851 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	575230
Track	FilteredModels2
ProteinId	575144

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:1101672..1103851 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575144	gene_1052	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575144	mRNA_1052-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1052	CDS_1052	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:1101672..1103851+
coding sequence from alignment at scaffold_2:1101672..1103851+

mRNA sequence

>mRNA_1052 ID=mRNA_1052|Name=jgi.p|Nanoce1779_2|575144|organism=Nannochloropsis oceanica|type=mRNA|length=1139bp
AGCTACACCACAGCCTAATCAAAATCATCATGCAGCGCCTTTGGACTGCT
TTGGCACTCTGCAGCATCATGCCTGGGGCGACGGCATTCGTGTTGCCTGT
GACCGGGCCGTGCATGCGCGAGACAATGACGATGAAGGCCTCTTTGTCTT
CTAAGTCCTTGTCTCGGGCGGATATGCTCCAATCGGCGGGCGGCGCCTTG
TTTGGCGCGGCTGTCTTGTCAACGGTGGCCCCGCAAGCGTCGAATGCTGA
GAGCACACTGGCGTCCAGAAAGGTGTTATACTTCCGGTACGCTCCCCGCA
TCAAGAATGCCCGCGATTACCTCGCCACTGATTTTAAGTCGGCGTTGGCC
AAGAAGGACTGGGCAGCCGTTGCTGCAGCGTATGAGATCCAGAAACAGGC
CCCGGACTCAAGCATGCGCTCCAATCCCCAACGATTTACGAACAAGTTCG
AGCGGGACCTCTACAGCCCCATGAAGATCTTCTCCCAATCCCAAAGCGAA
AAGGGCGCTTCGCCCAAGCTTGCGGCCTTGCTGAAAGCCGAGGGTGAGTT
GGAAGAAGCCTTGGATCGCTTGCAGCTCGTTGCCAAGGGTGATTTGAAAC
CCCCTAAGAAGGGGGGAGGAGGGCTGTTCGGATTTGGGGGTGCGGAGGCG
CCCGCTGATAAGTACACGGGGATGAGCCAGGAGAAGATGGCGAATGCTTT
GTATGCAGATGCAAAGACAGCATTCAATGCGTGGGTGGATGTGACGAACA
AAGCTATCATCGAGGTGAATAAGTTCGAGCCGCTCCCTTAGAGATCGACT
GACCGGGACCGTCGGTCAGAATGTGCGTTTCACAAGTGTATGTTGTTTGT
GCGTGTTAAGGATGTTAGTCATTCTCCTTTCTGCAGCAAGTAAATAGGCC
TTGACTCGTTTCTTTTGGAGTGTGCCCTCGGGGAGGGCTTTTAGTGGCGC
ATGCCGAGCAGTTTTTAACCTCACCATGCGGAATTCCCAATATGGAGAAA
GGAAATAGAAAACACATGATAATTTAAACCAGCAGCGACATTATTGAATA
AAAAATAGTTTTCAATTTTCTATACGCAAAGCGTTCACATTTATTTTGGT
CGTCTGGCTTTTGCTTTTCCTCCTGTGCGACGAATGACC

protein sequence of jgi.p|Nanoce1779_2|575144

>mRNA_1052-protein ID=mRNA_1052-protein|Name=jgi.p|Nanoce1779_2|575144|organism=Nannochloropsis oceanica|type=polypeptide|length=254bp
MQRLWTALALCSIMPGATAFVLPVTGPCMRETMTMKASLSSKSLSRADML
QSAGGALFGAAVLSTVAPQASNAESTLASRKVLYFRYAPRIKNARDYLAT
DFKSALAKKDWAAVAAAYEIQKQAPDSSMRSNPQRFTNKFERDLYSPMKI
FSQSQSEKGASPKLAALLKAEGELEEALDRLQLVAKGDLKPPKKGGGGLF
GFGGAEAPADKYTGMSQEKMANALYADAKTAFNAWVDVTNKAIIEVNKFE
PLP*

mRNA from alignment at scaffold_2:1101672..1103851+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1052 ID=mRNA_1052|Name=jgi.p|Nanoce1779_2|575144|organism=Nannochloropsis oceanica|type=mRNA|length=2180bp|location=Sequence derived from alignment at scaffold_2:1101672..1103851+ (Nannochloropsis oceanica)
AGCTACACCACAGCCTAATCAAAATCATCATGCAGCGCCTTTGGACTGCT
TTGGCACTCTGCAGCATCATGCCTGGGGCGACGGCATTCGTGTTGCCTGT
GACCGGGCCGTGCATGCGCGAGGTACGTGTGTGTTGTAAAAAGCGAGGCA
GGGGAGGGGTTGACGACGACGAATTGAAACTCGCCCCGCTAACAACTTGA
CCCTAAAGTACGCAAGCTACTTGATAAGGCGTCATTGATTGCGCGATTAT
TAATGCATGAAAGCTTGCCCTTAACAGATCACTCCTTTCCATAGCATTTA
GCTTTGGTGATGACACAACCGTAAGTAGCGACACCCGATACCAACCATCG
ACCATGTCCTCTCCCTCACCTTTTTACAGACAATGACGATGAAGGCCTCT
TTGTCTTCTAAGTCCTTGTCTCGGGCGGATATGCTCCAATCGGCGGGCGG
CGCCTTGTTTGGCGCGGCTGTCTTGTCAACGGTGGCCCCGCAAGCGTCGA
ATGCTGAGAGCACACTGGCGTCCAGAAAGGTGTTATACTTCCGGGTAAGT
CACGTTTCAATCTAGCTTGTGCCGTGTCTAATCTGGGGAAGGCCTTGCTC
TATTTGATGGCCCTGTCTGTCCAAGAGAGTAGGGTGCTGTAAACTTCGCA
CGTTTGTATTGTTGCTCCCCGGCATGTTTTTAAGCTATGGGTAAGTGGCA
AAAGCAGGAACGCCTGCCCCGGTTATCTGCCGGCTGATAATGCTGGATTG
TGTGCTTGTGGCCTTGATCTGGGTGTGATTGACAAATGCTCGGTTGTTGC
AGACGCAAATGTACATTTTCGTCGCGCTAAGTTATTTATTCCTGTCATCC
ATACTGAAAAGCCTCCTAATTGACCATCCCCTCCCTCCCTCCCTCCCTCC
CCCCTTCCCTTCCTCCCTCTTCCCCTCTCCAACTAGTACGCTCCCCGCAT
CAAGAATGCCCGCGATTACCTCGCCACTGATTTTAAGTCGGCGTTGGCCA
AGAAGGACTGGGCAGCCGTTGCTGCAGCGTATGAGATCCAGAAACAGGCC
CCGGACTCAAGCATGCGCTCCAATCCCCAACGATTTACGAACAAGTTCGA
GCGGTGAGGAAGGAGGGGGGACAGCTAGTGAAGGAAGAATGGAGCGGGAC
ACTTAATTTTTCGTTGCGATTGATGTCCAGATACCTGTATCCTTCTCGCT
GGCAGGAACGCACGCTAACGCCGCACCCATGCGTTCATCATATCCGCCTT
TCTTTTTCCTCTCCAATCCATTCACACCCAACAGGGACCTCTACAGCCCC
ATGAAGATCTTCTCCCAATCCCAAAGCGAAAAGGGCGCTTCGCCCAAGCT
TGCGGCCTTGCTGAAAGCCGAGGGTGAGTTGGAAGAAGCCTTGGATCGCT
TGCAGCTCGTTGCCAAGGGTGATTTGAAACCCCCTAAGAAGGGGGGAGGA
GGGCTGTTCGGATTTGGGGGTGCGGAGGCGCCCGCTGATAAGTACACGGG
GATGAGCCAGGAGAAGATGGCGAATGCTTTGTATGCAGATGCAAAGACAG
CATTCAATGCGTGGGTGGATGTGACGAACAAAGGTATGTTTTGAGATCAG
GGAGAGTGGAAGGGTTGCATGGAGTGCGGTGGTTTTTGAATTATTTTTCT
CACTTTCTTATCCTTCAACCATGCTTTGATTGCGTAAAGATGGGCACAGA
AATCTTTCATGTTCTGCATGTTGCGATTTTGGCATTTTCCATTGTAGTAC
GAAACTCGCTCTCACTCCCTCCCCTTTTCTTCGTTCCCATACAGCTATCA
TCGAGGTGAATAAGTTCGAGCCGCTCCCTTAGAGATCGACTGACCGGGAC
CGTCGGTCAGAATGTGCGTTTCACAAGTGTATGTTGTTTGTGCGTGTTAA
GGATGTTAGTCATTCTCCTTTCTGCAGCAAGTAAATAGGCCTTGACTCGT
TTCTTTTGGAGTGTGCCCTCGGGGAGGGCTTTTAGTGGCGCATGCCGAGC
AGTTTTTAACCTCACCATGCGGAATTCCCAATATGGAGAAAGGAAATAGA
AAACACATGATAATTTAAACCAGCAGCGACATTATTGAATAAAAAATAGT
TTTCAATTTTCTATACGCAAAGCGTTCACATTTATTTTGGTCGTCTGGCT
TTTGCTTTTCCTCCTGTGCGACGAATGACC

Coding sequence (CDS) from alignment at scaffold_2:1101672..1103851+

>mRNA_1052 ID=mRNA_1052|Name=jgi.p|Nanoce1779_2|575144|organism=Nannochloropsis oceanica|type=CDS|length=3810bp|location=Sequence derived from alignment at scaffold_2:1101672..1103851+ (Nannochloropsis oceanica)
ATGCAGCGCCTTTGGACTGCTTTGGCACTCTGCAGCATCATGCCTGGGGC
GACGGCATTCGTGTTGCCTGTGACCGGGCCGTGCATGCGCGAGACAATGA
CGATGAAGGCCTCTTTGTCTTCTAAGTCCTTGTCTCGGGCGGATATGCTC
CAATCGGCGGGCGGCGCCTTGTTTGGCGCGGCTGTCTTGTCAACGGTGGC
CCCGCAAGCGTCGAATGCTGAGAGCACACTGGCGTCCAGAAAGGTGTTAT
ACTTCCGGTACGCTCCCCGCATCAAGAATGCCCGCGATTACCTCGCCACT
GATTTTAAGTCGGCGTTGGCCAAGAAGGACTGGGCAGCCGTTGCTGCAGC
GTATGAGATCCAGAAACAGGCCCCGGACTCAAGCATGCGCTCCAATCCCC
AACGATTTACGAACAAGTTCGAGCGGGACCTCTACAGCCCCATGAAGATC
TTCTCCCAATCCCAAAGCGAAAAGGGCGCTTCGCCCAAGCTTGCGGCCTT
GCTGAAAGCCGAGGGTGAGTTGGAAGAAGCCTTGGATCGCTTGCAGCTCG
TTGCCAAGGGTGATTTGAAACCCCCTAAGAAGGGGGGAGGAGGGCTGTTC
GGATTTGGGGGTGCGGAGGCGCCCGCTGATAAGTACACGGGGATGAGCCA
GGAGAAGATGGCGAATGCTTTGTATGCAGATGCAAAGACAGCATTCAATG
CGTGGGTGGATGTGACGAACAAAGCTATCATCGAGGTGAATAAGTTCGAG
CCGCTCCCTTAGATGCAGCGCCTTTGGACTGCTTTGGCACTCTGCAGCAT
CATGCCTGGGGCGACGGCATTCGTGTTGCCTGTGACCGGGCCGTGCATGC
GCGAGACAATGACGATGAAGGCCTCTTTGTCTTCTAAGTCCTTGTCTCGG
GCGGATATGCTCCAATCGGCGGGCGGCGCCTTGTTTGGCGCGGCTGTCTT
GTCAACGGTGGCCCCGCAAGCGTCGAATGCTGAGAGCACACTGGCGTCCA
GAAAGGTGTTATACTTCCGGTACGCTCCCCGCATCAAGAATGCCCGCGAT
TACCTCGCCACTGATTTTAAGTCGGCGTTGGCCAAGAAGGACTGGGCAGC
CGTTGCTGCAGCGTATGAGATCCAGAAACAGGCCCCGGACTCAAGCATGC
GCTCCAATCCCCAACGATTTACGAACAAGTTCGAGCGGGACCTCTACAGC
CCCATGAAGATCTTCTCCCAATCCCAAAGCGAAAAGGGCGCTTCGCCCAA
GCTTGCGGCCTTGCTGAAAGCCGAGGGTGAGTTGGAAGAAGCCTTGGATC
GCTTGCAGCTCGTTGCCAAGGGTGATTTGAAACCCCCTAAGAAGGGGGGA
GGAGGGCTGTTCGGATTTGGGGGTGCGGAGGCGCCCGCTGATAAGTACAC
GGGGATGAGCCAGGAGAAGATGGCGAATGCTTTGTATGCAGATGCAAAGA
CAGCATTCAATGCGTGGGTGGATGTGACGAACAAAGCTATCATCGAGGTG
AATAAGTTCGAGCCGCTCCCTTAGATGCAGCGCCTTTGGACTGCTTTGGC
ACTCTGCAGCATCATGCCTGGGGCGACGGCATTCGTGTTGCCTGTGACCG
GGCCGTGCATGCGCGAGACAATGACGATGAAGGCCTCTTTGTCTTCTAAG
TCCTTGTCTCGGGCGGATATGCTCCAATCGGCGGGCGGCGCCTTGTTTGG
CGCGGCTGTCTTGTCAACGGTGGCCCCGCAAGCGTCGAATGCTGAGAGCA
CACTGGCGTCCAGAAAGGTGTTATACTTCCGGTACGCTCCCCGCATCAAG
AATGCCCGCGATTACCTCGCCACTGATTTTAAGTCGGCGTTGGCCAAGAA
GGACTGGGCAGCCGTTGCTGCAGCGTATGAGATCCAGAAACAGGCCCCGG
ACTCAAGCATGCGCTCCAATCCCCAACGATTTACGAACAAGTTCGAGCGG
GACCTCTACAGCCCCATGAAGATCTTCTCCCAATCCCAAAGCGAAAAGGG
CGCTTCGCCCAAGCTTGCGGCCTTGCTGAAAGCCGAGGGTGAGTTGGAAG
AAGCCTTGGATCGCTTGCAGCTCGTTGCCAAGGGTGATTTGAAACCCCCT
AAGAAGGGGGGAGGAGGGCTGTTCGGATTTGGGGGTGCGGAGGCGCCCGC
TGATAAGTACACGGGGATGAGCCAGGAGAAGATGGCGAATGCTTTGTATG
CAGATGCAAAGACAGCATTCAATGCGTGGGTGGATGTGACGAACAAAGCT
ATCATCGAGGTGAATAAGTTCGAGCCGCTCCCTTAGATGCAGCGCCTTTG
GACTGCTTTGGCACTCTGCAGCATCATGCCTGGGGCGACGGCATTCGTGT
TGCCTGTGACCGGGCCGTGCATGCGCGAGACAATGACGATGAAGGCCTCT
TTGTCTTCTAAGTCCTTGTCTCGGGCGGATATGCTCCAATCGGCGGGCGG
CGCCTTGTTTGGCGCGGCTGTCTTGTCAACGGTGGCCCCGCAAGCGTCGA
ATGCTGAGAGCACACTGGCGTCCAGAAAGGTGTTATACTTCCGGTACGCT
CCCCGCATCAAGAATGCCCGCGATTACCTCGCCACTGATTTTAAGTCGGC
GTTGGCCAAGAAGGACTGGGCAGCCGTTGCTGCAGCGTATGAGATCCAGA
AACAGGCCCCGGACTCAAGCATGCGCTCCAATCCCCAACGATTTACGAAC
AAGTTCGAGCGGGACCTCTACAGCCCCATGAAGATCTTCTCCCAATCCCA
AAGCGAAAAGGGCGCTTCGCCCAAGCTTGCGGCCTTGCTGAAAGCCGAGG
GTGAGTTGGAAGAAGCCTTGGATCGCTTGCAGCTCGTTGCCAAGGGTGAT
TTGAAACCCCCTAAGAAGGGGGGAGGAGGGCTGTTCGGATTTGGGGGTGC
GGAGGCGCCCGCTGATAAGTACACGGGGATGAGCCAGGAGAAGATGGCGA
ATGCTTTGTATGCAGATGCAAAGACAGCATTCAATGCGTGGGTGGATGTG
ACGAACAAAGCTATCATCGAGGTGAATAAGTTCGAGCCGCTCCCTTAGAT
GCAGCGCCTTTGGACTGCTTTGGCACTCTGCAGCATCATGCCTGGGGCGA
CGGCATTCGTGTTGCCTGTGACCGGGCCGTGCATGCGCGAGACAATGACG
ATGAAGGCCTCTTTGTCTTCTAAGTCCTTGTCTCGGGCGGATATGCTCCA
ATCGGCGGGCGGCGCCTTGTTTGGCGCGGCTGTCTTGTCAACGGTGGCCC
CGCAAGCGTCGAATGCTGAGAGCACACTGGCGTCCAGAAAGGTGTTATAC
TTCCGGTACGCTCCCCGCATCAAGAATGCCCGCGATTACCTCGCCACTGA
TTTTAAGTCGGCGTTGGCCAAGAAGGACTGGGCAGCCGTTGCTGCAGCGT
ATGAGATCCAGAAACAGGCCCCGGACTCAAGCATGCGCTCCAATCCCCAA
CGATTTACGAACAAGTTCGAGCGGGACCTCTACAGCCCCATGAAGATCTT
CTCCCAATCCCAAAGCGAAAAGGGCGCTTCGCCCAAGCTTGCGGCCTTGC
TGAAAGCCGAGGGTGAGTTGGAAGAAGCCTTGGATCGCTTGCAGCTCGTT
GCCAAGGGTGATTTGAAACCCCCTAAGAAGGGGGGAGGAGGGCTGTTCGG
ATTTGGGGGTGCGGAGGCGCCCGCTGATAAGTACACGGGGATGAGCCAGG
AGAAGATGGCGAATGCTTTGTATGCAGATGCAAAGACAGCATTCAATGCG
TGGGTGGATGTGACGAACAAAGCTATCATCGAGGTGAATAAGTTCGAGCC
GCTCCCTTAG

Synonyms

Publications