jgi.p|Nanoce1779_2|575139, mRNA_1051 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575139
Unique NamemRNA_1051
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2296
Alignment locationscaffold_2:1099222..1101517 -

Link to JBrowse

Properties
Property NameValue
TranscriptId575225
TrackFilteredModels2
ProteinId575139
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1099222..1101517 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575139gene_1051Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575139mRNA_1051-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1051CDS_1051Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1051 ID=mRNA_1051|Name=jgi.p|Nanoce1779_2|575139|organism=Nannochloropsis oceanica|type=mRNA|length=2296bp
AGGAGTGTGAGCAGGGATATCTGCAAGAGGCGGATGGGGTTGGCCAATAT
CCAACTTCCGAAACGACTGATAGCATCCTCCGCCACCGGAAGTCTCTTCC
TTGCGCTCGACACAGCTCAACTTGACCACTAACCGCCACAGACACCATGC
TCCACATCAGCAGCACACTGTAAAACAAATTGTGGACTACATACAGAAGC
CGCTGGGTGAGGCTGGGTCCTTACTTCCAGCAAGCCAAAGTCACAACGCC
CGTGACGCACTCCAGAAGAGGATGCACTAACGATGAATTGACACAAGGAC
GCCGAGCCCTGCCATCAGCCTAGGCCTGCCCCGGCGTTCCCTCGTCACCA
CTACACAGCCTTCGACTTTGTCAAGTGCAGAACCGGAATAGAGAAGCGGC
TCGGATGTGACGTGATTGCTGTGGATGCCGAGGGCATGCGAGAGCACTCA
GTAGTAACAGCACAGCTTGAAATTTTTCAGACGTGGTTGCATGTCCACAC
CCATCCGGGCACATGCACAGACCACTATTGGTCCTCGCCGGTTCGATGAG
AAGTTGTTGTTCTTGTGTGCGATGATGCTGGCAGTGCTGACAATGGCCTG
CGCAGGTTGCCTGGGGACACTATGATGTATCCCCCTCTTGAAGTCACCCA
AAGGTTGTGGCGTATGTCCCTGCCATTTATGGATGTGGTCCAGGCAGGCA
CTCACGCCATCGCACAATCCCTTTAATTACCCAAACTCTACGCAAGGATT
TGGTGGATGCAGCTGGTTGTATTTATGGTTTGGAACGGCTGGTGCTGCTG
CTCTACTTGTATTCCGGCTCTCCAGCCCTGAATTCTATGTTTAATCCGTC
TTTCCGTCAACACACTTACATGGTCGGACTCGGCCTCATTCTTGTGCGAA
GTCTGCGAGTTCTTCTTTGGGGCCCTTGCTTTTTAAATCTCTTGCCGTTG
GCGCCTTTCGGCGTCACCCATTCACACCCACCAACCTGTATTCACAACCC
ACTCAGTTATCCTCCCCTAACCTTCCCTCTCCACGCAGGTTGCGGTGTCC
GGCTCTTCTTCCTCGTCGTTTTTACACTCCATATATCACTATATACATCA
TGTCCGACAACGACAACACCCAAGCTTGCGCTGACGACACCCGTCCCTGT
GTGAAGGGCTGCGGGTTCTATGGTTCCGCGCAGACAGGCTACATGTGTTC
CAAATGCTTCAAAGACACTGCGGGTGTCACCCGGGCGTCCATCGAGAGCT
CAACTCCATCCAGCAGCAGCAGTGGCAGTGCCGCGGCGGCCGCGATTCTG
ACCCAAGCCTTGGCCCTTGGAGAGGAGGGATCGGCCTCGCCCTTGGGTGC
AGCCGCCTCTGCTGCATCTCTTGGATCCGTGGATTTGCCGCAAGGCCCGG
ACGCAACGCCTTCGCAGTCGCAGACAAAGGCCGTGGTAGGCATGGAGGCT
GGCAGCAGCAGCATGTCGTCGTCGATGGGTTTGTCTGCTGCGCCTTCCCT
GACGACCAAGGACCTCGCTGCTCCTGCCACCATGGAGGGCATGGTTGCCG
GAGGAGGGGAAGCAGCCGCAGCAACCGATGCAGCAACACACGTTACTGCG
CCTGTAGTCGCAAAAAAAAACAAGAACCGTTGCTTTGTATGTAGCAAAAA
GGTGGGGTTGACGGGGATCGAGTGCCGCTGTGAGGGCGTGTTTTGTGGCG
TGCACCGATACCCCAGTCAGCATGCATGTGCCTTTGACCACAAGGAGCAT
GATCGGGCGAACCTCAAGACGACCTTAACGGGGGGAGGGCAGTTCGCAAA
GATGACGGATCAGCTTTAGATTTAGGAAAGAGGAGGACAAGTTCTGGAGG
GAAGGAGGGAGAGAGGGGTGGTTGAATGAACATGCCGGTGAGTTGATTGG
ACATGTCTGAGGAGGAGATGAGCGGAGGATAGAGACGAGGGTGTGGAGGG
AGGGAATGTGCACAGTGACAAATACAAAAAGGAGTGGGAGAAGAGAGAAA
GCGAATAATAGAAGGGAAACGGGAAGGCAATGCAGCGCATGATGACGAAA
AGAGACCAAGATTGCGAGCATTCTAGTATCATCACCATCACCATCACACG
GGATGAGGCTATATAGAAGGTGATACGTATAGTGTAGTGGCGAGAAAGAG
ATTGGCCAACGACCGAAGGCAATGCGAGGACCACATTTTCGTGGAACGTT
GGTGAGGGAGAGGGAGAGAGGGAGGGAAGGAAGACAAGAAGACAAGTTAA
CATGTGTAAGTACAAGAAATGCAAGAAACCCAGAGCACGGACAGGA
back to top

protein sequence of jgi.p|Nanoce1779_2|575139

>mRNA_1051-protein ID=mRNA_1051-protein|Name=jgi.p|Nanoce1779_2|575139|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MSDNDNTQACADDTRPCVKGCGFYGSAQTGYMCSKCFKDTAGVTRASIES
STPSSSSSGSAAAAAILTQALALGEEGSASPLGAAASAASLGSVDLPQGP
DATPSQSQTKAVVGMEAGSSSMSSSMGLSAAPSLTTKDLAAPATMEGMVA
GGGEAAAATDAATHVTAPVVAKKNKNRCFVCSKKVGLTGIECRCEGVFCG
VHRYPSQHACAFDHKEHDRANLKTTLTGGGQFAKMTDQL*
back to top

mRNA from alignment at scaffold_2:1099222..1101517-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1051 ID=mRNA_1051|Name=jgi.p|Nanoce1779_2|575139|organism=Nannochloropsis oceanica|type=mRNA|length=2296bp|location=Sequence derived from alignment at scaffold_2:1099222..1101517- (Nannochloropsis oceanica)
AGGAGTGTGAGCAGGGATATCTGCAAGAGGCGGATGGGGTTGGCCAATAT
CCAACTTCCGAAACGACTGATAGCATCCTCCGCCACCGGAAGTCTCTTCC
TTGCGCTCGACACAGCTCAACTTGACCACTAACCGCCACAGACACCATGC
TCCACATCAGCAGCACACTGTAAAACAAATTGTGGACTACATACAGAAGC
CGCTGGGTGAGGCTGGGTCCTTACTTCCAGCAAGCCAAAGTCACAACGCC
CGTGACGCACTCCAGAAGAGGATGCACTAACGATGAATTGACACAAGGAC
GCCGAGCCCTGCCATCAGCCTAGGCCTGCCCCGGCGTTCCCTCGTCACCA
CTACACAGCCTTCGACTTTGTCAAGTGCAGAACCGGAATAGAGAAGCGGC
TCGGATGTGACGTGATTGCTGTGGATGCCGAGGGCATGCGAGAGCACTCA
GTAGTAACAGCACAGCTTGAAATTTTTCAGACGTGGTTGCATGTCCACAC
CCATCCGGGCACATGCACAGACCACTATTGGTCCTCGCCGGTTCGATGAG
AAGTTGTTGTTCTTGTGTGCGATGATGCTGGCAGTGCTGACAATGGCCTG
CGCAGGTTGCCTGGGGACACTATGATGTATCCCCCTCTTGAAGTCACCCA
AAGGTTGTGGCGTATGTCCCTGCCATTTATGGATGTGGTCCAGGCAGGCA
CTCACGCCATCGCACAATCCCTTTAATTACCCAAACTCTACGCAAGGATT
TGGTGGATGCAGCTGGTTGTATTTATGGTTTGGAACGGCTGGTGCTGCTG
CTCTACTTGTATTCCGGCTCTCCAGCCCTGAATTCTATGTTTAATCCGTC
TTTCCGTCAACACACTTACATGGTCGGACTCGGCCTCATTCTTGTGCGAA
GTCTGCGAGTTCTTCTTTGGGGCCCTTGCTTTTTAAATCTCTTGCCGTTG
GCGCCTTTCGGCGTCACCCATTCACACCCACCAACCTGTATTCACAACCC
ACTCAGTTATCCTCCCCTAACCTTCCCTCTCCACGCAGGTTGCGGTGTCC
GGCTCTTCTTCCTCGTCGTTTTTACACTCCATATATCACTATATACATCA
TGTCCGACAACGACAACACCCAAGCTTGCGCTGACGACACCCGTCCCTGT
GTGAAGGGCTGCGGGTTCTATGGTTCCGCGCAGACAGGCTACATGTGTTC
CAAATGCTTCAAAGACACTGCGGGTGTCACCCGGGCGTCCATCGAGAGCT
CAACTCCATCCAGCAGCAGCAGTGGCAGTGCCGCGGCGGCCGCGATTCTG
ACCCAAGCCTTGGCCCTTGGAGAGGAGGGATCGGCCTCGCCCTTGGGTGC
AGCCGCCTCTGCTGCATCTCTTGGATCCGTGGATTTGCCGCAAGGCCCGG
ACGCAACGCCTTCGCAGTCGCAGACAAAGGCCGTGGTAGGCATGGAGGCT
GGCAGCAGCAGCATGTCGTCGTCGATGGGTTTGTCTGCTGCGCCTTCCCT
GACGACCAAGGACCTCGCTGCTCCTGCCACCATGGAGGGCATGGTTGCCG
GAGGAGGGGAAGCAGCCGCAGCAACCGATGCAGCAACACACGTTACTGCG
CCTGTAGTCGCAAAAAAAAACAAGAACCGTTGCTTTGTATGTAGCAAAAA
GGTGGGGTTGACGGGGATCGAGTGCCGCTGTGAGGGCGTGTTTTGTGGCG
TGCACCGATACCCCAGTCAGCATGCATGTGCCTTTGACCACAAGGAGCAT
GATCGGGCGAACCTCAAGACGACCTTAACGGGGGGAGGGCAGTTCGCAAA
GATGACGGATCAGCTTTAGATTTAGGAAAGAGGAGGACAAGTTCTGGAGG
GAAGGAGGGAGAGAGGGGTGGTTGAATGAACATGCCGGTGAGTTGATTGG
ACATGTCTGAGGAGGAGATGAGCGGAGGATAGAGACGAGGGTGTGGAGGG
AGGGAATGTGCACAGTGACAAATACAAAAAGGAGTGGGAGAAGAGAGAAA
GCGAATAATAGAAGGGAAACGGGAAGGCAATGCAGCGCATGATGACGAAA
AGAGACCAAGATTGCGAGCATTCTAGTATCATCACCATCACCATCACACG
GGATGAGGCTATATAGAAGGTGATACGTATAGTGTAGTGGCGAGAAAGAG
ATTGGCCAACGACCGAAGGCAATGCGAGGACCACATTTTCGTGGAACGTT
GGTGAGGGAGAGGGAGAGAGGGAGGGAAGGAAGACAAGAAGACAAGTTAA
CATGTGTAAGTACAAGAAATGCAAGAAACCCAGAGCACGGACAGGA
back to top

Coding sequence (CDS) from alignment at scaffold_2:1099222..1101517-

>mRNA_1051 ID=mRNA_1051|Name=jgi.p|Nanoce1779_2|575139|organism=Nannochloropsis oceanica|type=CDS|length=720bp|location=Sequence derived from alignment at scaffold_2:1099222..1101517- (Nannochloropsis oceanica)
ATGTCCGACAACGACAACACCCAAGCTTGCGCTGACGACACCCGTCCCTG
TGTGAAGGGCTGCGGGTTCTATGGTTCCGCGCAGACAGGCTACATGTGTT
CCAAATGCTTCAAAGACACTGCGGGTGTCACCCGGGCGTCCATCGAGAGC
TCAACTCCATCCAGCAGCAGCAGTGGCAGTGCCGCGGCGGCCGCGATTCT
GACCCAAGCCTTGGCCCTTGGAGAGGAGGGATCGGCCTCGCCCTTGGGTG
CAGCCGCCTCTGCTGCATCTCTTGGATCCGTGGATTTGCCGCAAGGCCCG
GACGCAACGCCTTCGCAGTCGCAGACAAAGGCCGTGGTAGGCATGGAGGC
TGGCAGCAGCAGCATGTCGTCGTCGATGGGTTTGTCTGCTGCGCCTTCCC
TGACGACCAAGGACCTCGCTGCTCCTGCCACCATGGAGGGCATGGTTGCC
GGAGGAGGGGAAGCAGCCGCAGCAACCGATGCAGCAACACACGTTACTGC
GCCTGTAGTCGCAAAAAAAAACAAGAACCGTTGCTTTGTATGTAGCAAAA
AGGTGGGGTTGACGGGGATCGAGTGCCGCTGTGAGGGCGTGTTTTGTGGC
GTGCACCGATACCCCAGTCAGCATGCATGTGCCTTTGACCACAAGGAGCA
TGATCGGGCGAACCTCAAGACGACCTTAACGGGGGGAGGGCAGTTCGCAA
AGATGACGGATCAGCTTTAG
back to top
Synonyms
Publications