jgi.p|Nanoce1779_2|533943, mRNA_10504 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|533943
Unique Name	mRNA_10504
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	714
Alignment location	scaffold_52:112780..113493 -

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Properties


Property Name	Value
TranscriptId	534029
Track	FilteredModels2
ProteinId	533943

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_52	supercontig	scaffold_52:112780..113493 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|533943	gene_10504	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10504	CDS_10504	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|533943	mRNA_10504-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_52:112780..113493-
coding sequence from alignment at scaffold_52:112780..113493-

mRNA sequence

>mRNA_10504 ID=mRNA_10504|Name=jgi.p|Nanoce1779_2|533943|organism=Nannochloropsis oceanica|type=mRNA|length=714bp
GTCGTGGGAGAGGCCGACGAGGCGAGAGACGGAGACGCACTGGGCGAGCC
AGTGGGGCTCAAAGAGGGGGAGGAGCTTGGGCTGCCTGTCGTGGGAAAGG
CCGATGGGGCAAGAGACGGAGACGCACTAGGGCTACCCGTCGTGGGAGAG
GCCGACGAGGCGAGAGACGGAGACGCACTGGGCGAGCCAGTGGGGCTCAA
AGAGGGGGGGAAGCTTGGGCTGCCTGTCGTGGGAAAGGCCGATGGGGCAA
GAGACGGAGACGCACTAGGGCTACCCGTCGTGGGAGAGGCCGACGAGGCG
AGAGACGGAGACGCACTGGGCGAGCCAGTGGGGCTCAAAGAGGGGGAGGA
GCTTGGGCTGCCTGTCGTGGGAAAGGCCGATGGGGCAAGAGACGGAGACG
CACTAGGGCTACCCGTCGTGGGAGAGGCCGACGAGGCGAGAGACGGAGAC
GCACTGGGCGAGCCAGTGGGGCTCAAAGAGGGGGGGGAGCTTGGGCTGCC
TGTCGTGGGAGAGGCCGATGGTGTGAGAGAGGGTGAAACGGTAGGCAATC
CTGTCGTGGGCGAAGCTGAAGGCGCTATAGTAGGGCTAGTGGAGTTGAAA
GGTCGCGGAGCCGCCGAGATCACTTCAAACGCAAGGAAGGCAGGATTACG
GACGAGTGTACAGGTTCCACCACAGCAAAAGCATGTGCTTGTATCTCTGT
TCCAATTGAAGTAA

protein sequence of jgi.p|Nanoce1779_2|533943

>mRNA_10504-protein ID=mRNA_10504-protein|Name=jgi.p|Nanoce1779_2|533943|organism=Nannochloropsis oceanica|type=polypeptide|length=238bp
VVGEADEARDGDALGEPVGLKEGEELGLPVVGKADGARDGDALGLPVVGE
ADEARDGDALGEPVGLKEGGKLGLPVVGKADGARDGDALGLPVVGEADEA
RDGDALGEPVGLKEGEELGLPVVGKADGARDGDALGLPVVGEADEARDGD
ALGEPVGLKEGGELGLPVVGEADGVREGETVGNPVVGEAEGAIVGLVELK
GRGAAEITSNARKAGLRTSVQVPPQQKHVLVSLFQLK*

mRNA from alignment at scaffold_52:112780..113493-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10504 ID=mRNA_10504|Name=jgi.p|Nanoce1779_2|533943|organism=Nannochloropsis oceanica|type=mRNA|length=714bp|location=Sequence derived from alignment at scaffold_52:112780..113493- (Nannochloropsis oceanica)
GTCGTGGGAGAGGCCGACGAGGCGAGAGACGGAGACGCACTGGGCGAGCC
AGTGGGGCTCAAAGAGGGGGAGGAGCTTGGGCTGCCTGTCGTGGGAAAGG
CCGATGGGGCAAGAGACGGAGACGCACTAGGGCTACCCGTCGTGGGAGAG
GCCGACGAGGCGAGAGACGGAGACGCACTGGGCGAGCCAGTGGGGCTCAA
AGAGGGGGGGAAGCTTGGGCTGCCTGTCGTGGGAAAGGCCGATGGGGCAA
GAGACGGAGACGCACTAGGGCTACCCGTCGTGGGAGAGGCCGACGAGGCG
AGAGACGGAGACGCACTGGGCGAGCCAGTGGGGCTCAAAGAGGGGGAGGA
GCTTGGGCTGCCTGTCGTGGGAAAGGCCGATGGGGCAAGAGACGGAGACG
CACTAGGGCTACCCGTCGTGGGAGAGGCCGACGAGGCGAGAGACGGAGAC
GCACTGGGCGAGCCAGTGGGGCTCAAAGAGGGGGGGGAGCTTGGGCTGCC
TGTCGTGGGAGAGGCCGATGGTGTGAGAGAGGGTGAAACGGTAGGCAATC
CTGTCGTGGGCGAAGCTGAAGGCGCTATAGTAGGGCTAGTGGAGTTGAAA
GGTCGCGGAGCCGCCGAGATCACTTCAAACGCAAGGAAGGCAGGATTACG
GACGAGTGTACAGGTTCCACCACAGCAAAAGCATGTGCTTGTATCTCTGT
TCCAATTGAAGTAA

Coding sequence (CDS) from alignment at scaffold_52:112780..113493-

>mRNA_10504 ID=mRNA_10504|Name=jgi.p|Nanoce1779_2|533943|organism=Nannochloropsis oceanica|type=CDS|length=714bp|location=Sequence derived from alignment at scaffold_52:112780..113493- (Nannochloropsis oceanica)
GTCGTGGGAGAGGCCGACGAGGCGAGAGACGGAGACGCACTGGGCGAGCC
AGTGGGGCTCAAAGAGGGGGAGGAGCTTGGGCTGCCTGTCGTGGGAAAGG
CCGATGGGGCAAGAGACGGAGACGCACTAGGGCTACCCGTCGTGGGAGAG
GCCGACGAGGCGAGAGACGGAGACGCACTGGGCGAGCCAGTGGGGCTCAA
AGAGGGGGGGAAGCTTGGGCTGCCTGTCGTGGGAAAGGCCGATGGGGCAA
GAGACGGAGACGCACTAGGGCTACCCGTCGTGGGAGAGGCCGACGAGGCG
AGAGACGGAGACGCACTGGGCGAGCCAGTGGGGCTCAAAGAGGGGGAGGA
GCTTGGGCTGCCTGTCGTGGGAAAGGCCGATGGGGCAAGAGACGGAGACG
CACTAGGGCTACCCGTCGTGGGAGAGGCCGACGAGGCGAGAGACGGAGAC
GCACTGGGCGAGCCAGTGGGGCTCAAAGAGGGGGGGGAGCTTGGGCTGCC
TGTCGTGGGAGAGGCCGATGGTGTGAGAGAGGGTGAAACGGTAGGCAATC
CTGTCGTGGGCGAAGCTGAAGGCGCTATAGTAGGGCTAGTGGAGTTGAAA
GGTCGCGGAGCCGCCGAGATCACTTCAAACGCAAGGAAGGCAGGATTACG
GACGAGTGTACAGGTTCCACCACAGCAAAAGCATGTGCTTGTATCTCTGT
TCCAATTGAAGTAA

Synonyms

Publications