jgi.p|Nanoce1779_2|610787, mRNA_10500 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|610787
Unique Name	mRNA_10500
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1115
Alignment location	scaffold_52:103581..105223 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	610873
Track	FilteredModels2
ProteinId	610787

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_52	supercontig	scaffold_52:103581..105223 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|610787	gene_10500	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|610787	mRNA_10500-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10500	CDS_10500	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_52:103581..105223+
coding sequence from alignment at scaffold_52:103581..105223+

mRNA sequence

>mRNA_10500 ID=mRNA_10500|Name=jgi.p|Nanoce1779_2|610787|organism=Nannochloropsis oceanica|type=mRNA|length=1115bp
GTTATGATAACGAAACCGCAGTGGTCCAGCGACGAATCAAAGAGAACCAG
AATCCGCTGGACTGCGAAAATGGAAAATATTTTTTATACAACCTCAACAA
TTATGGCATGGGTTCTGACCTTCATACGCTTGGTCTTATGATTGGCTTTG
CAATGCAGCACAACCGCACCCTGCTCTACCATCCGCAGACCAACTGGCGA
TACACATCTGAGCATATTTGCCATGAAATTTTGACTCCTGATTGTTTTTT
CAGACCGCTTTCACGATGCCAGGTCTGTATTTTATGCTCTTTTACTTGTA
CCTTCAATCAATATTTTCTCTGAACCACGGCCTATAACAGTACATGGCAA
ACAGCATAGATGTCGTCAGCAAAGAGTTTAGTGATACTTCACGGGACCTT
GTGGATGACCAGTTCCTGCTGGCCCCGAGCTGTTTTGATTTGGACAAAGG
TCTTATTCCCAGTCTGTCCGACTGGCCGACGAAAGGCATCTCATGGTGGA
GGGCGCAAACAACAAGGTATTTGGCTTGGCCCTCTGAGAGCCTTTTTGCT
TGGGCAAGACACTATTTTGTGCAAGACTTGGTCAGACACCCATCTCCTAC
TAGTTGGAACGCCTCCATGCAACCTCCCCCCGATAGTGCAATATGTATCC
ATATTCGCCACGGCGATAAATTCCAAGAGATGACGCTACATCCTATGATA
GAATACCTTGAAGCTGCTGCGTGGCTAGCTGGGAACGATACTAGCTTGTC
TCGAAGCCAAAGTTTATTTCTGTCCACTGACGATCCCAACATAATCGATG
ATATCGCCCGCGGCCGTTATGACCATATGAATTTCACTTTCTACTTCACA
AGGTAAAAGTCTTTTGGTTCGGGCATCGAGTTTACTTAGACACATACAGA
TCATTCTTTCTCTTTCGTGGTCTGCAGGTATGAGAGGCGGTCTGACGACA
TAAGTCCCGGTGGAATCGCTAGGAATATAGGCCCCGGATTATTCGGCAGC
ATTTCTGTGGCCAATTTGATATTAGGCGTGCATCCACACTGCAAGGCTTT
TGTGCAGACCACAGGTTCGAACTGGAATAGATTGATCGATGAAATACGAA
AAACAGACGGTGAAA

protein sequence of jgi.p|Nanoce1779_2|610787

>mRNA_10500-protein ID=mRNA_10500-protein|Name=jgi.p|Nanoce1779_2|610787|organism=Nannochloropsis oceanica|type=polypeptide|length=171bp
MANSIDVVSKEFSDTSRDLVDDQFLLAPSCFDLDKGLIPSLSDWPTKGIS
WWRAQTTRYLAWPSESLFAWARHYFVQDLVRHPSPTSWNASMQPPPDSAI
CIHIRHGDKFQEMTLHPMIEYLEAAAWLAGNDTSLSRSQSLFLSTDDPNI
IDDIARGRYDHMNFTFYFTR*

mRNA from alignment at scaffold_52:103581..105223+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10500 ID=mRNA_10500|Name=jgi.p|Nanoce1779_2|610787|organism=Nannochloropsis oceanica|type=mRNA|length=1643bp|location=Sequence derived from alignment at scaffold_52:103581..105223+ (Nannochloropsis oceanica)
GTTATGATAACGAAACCGCAGTGGTCCAGCGACGAATCAAAGAGAACCAG
AATCCGCTGGACTGCGAAAATGGAAAATATTTTTTATACAACCTCAACAA
TTATGGCATGGGTTCTGACCTTCATACGCTTGGCAAGTAGACAATATATC
CCTTTGAAAGGACAGAGTCATCTATTGATCAAACCCGTGGGGCACACACA
CAACTACAGGTCTTATGATTGGCTTTGCAATGCAGCACAACCGCACCCTG
CTCTACCATCCGCAGACGTAAGTGCTATGGGAGAAGTCAATCGTTATTCT
GTCGCGATTCAGATCATAATTTATGATTCCTTTCCCAAACATAGCAACTG
GCGATACACATCTGAGCATATTTGCCATGAAATTTTGACTCCTGATTGTT
TTTTCAGACCGCTTTCACGATGCCAGGTCTGTATTTTATGCTCTTTTACT
TGTACCTTCAATCAATATTTTCTCTGAACCACGGCCTATAACAGTACATG
GCAAACAGCATAGATGTCGTCAGCAAAGAGTTTAGTGATACTTCACGGGA
CCTTGTGGATGACCAGTTCCTGCTGGCCCCGAGCTGTTTTGATTTGGACA
AAGGTCTTATTCCCAGTCTGTCCGACTGGCCGACGAAAGGCATCTCATGG
TGGAGGGCGCAAACAACAAGGTAATCAAACACGGCATGCATTCCCTACTT
TCCTTTAACGATCTGTTTGTAGCAGGAATATGCTATTCCAAAATCCATGC
AATTTATGATTTAGGTATTTGGCTTGGCCCTCTGAGAGCCTTTTTGCTTG
GGCAAGACACTATTTTGTGCAAGACTTGGTCAGGTGAGGTCGATTTCTCA
ACCCGACGAAAAATTATCCAAATTTTTTTTCTTACCATTGCTCGTCAATG
CCTAGACACCCATCTCCTACTAGTTGGAACGCCTCCATGCAACCTCCCCC
CGATAGTGCAATATGTATCCATATTCGCCACGGCGATAAATTCCAAGAGA
TGACGTAAGTATGACACATGGACTATTCTCGCTCTCTCGTTCCCCTTTAC
CTACAGAACGAGCACCACGACGTGACATACTTCCTACACGGATAGGCTAC
ATCCTATGATAGAATACCTTGAAGCTGCTGCGTGGCTAGCTGGGAACGAT
ACTAGCTTGTCTCGAAGCCAAAGTTTATTTCTGTCCACTGACGATCCCAA
CATAATCGATGATATCGCCCGCGGCCGTTATGACCATATGAATTTCACTT
TCTACTTCACAAGGTAAAAGTCTTTTGGTTCGGGCATCGAGTTTACTTAG
ACACATACAGATCATTCTTTCTCTTTCGTGGTCTGCAGGTATGAGAGGCG
GTCTGACGACATAAGTCCCGGTGGAATCGCTAGGAATATAGGCCCCGGAT
TATTCGGCAGGTGAGTGTGGCTACATGAAGGACACCCATACACACTTGGA
GACGACAAGAGGTATAACTAAGACTGCGCTCCTCCTTCCTGCCTTCCCCT
TCCCCTCTATTCTTGTATTTGAAATAGCATTTCTGTGGCCAATTTGATAT
TAGGCGTGCATCCACACTGCAAGGCTTTTGTGCAGACCACAGGTTCGAAC
TGGAATAGATTGATCGATGAAATACGAAAAACAGACGGTGAAA

Coding sequence (CDS) from alignment at scaffold_52:103581..105223+

>mRNA_10500 ID=mRNA_10500|Name=jgi.p|Nanoce1779_2|610787|organism=Nannochloropsis oceanica|type=CDS|length=2052bp|location=Sequence derived from alignment at scaffold_52:103581..105223+ (Nannochloropsis oceanica)
ATGGCAAACAGCATAGATGTCGTCAGCAAAGAGTTTAGTGATACTTCACG
GGACCTTGTGGATGACCAGTTCCTGCTGGCCCCGAGCTGTTTTGATTTGG
ACAAAGGTCTTATTCCCAGTCTGTCCGACTGGCCGACGAAAGGCATCTCA
TGGTGGAGGGCGCAAACAACAAGGTATTTGGCTTGGCCCTCTGAGAGCCT
TTTTGCTTGGGCAAGACACTATTTTGTGCAAGACTTGGTCAGACACCCAT
CTCCTACTAGTTGGAACGCCTCCATGCAACCTCCCCCCGATAGTGCAATA
TGTATCCATATTCGCCACGGCGATAAATTCCAAGAGATGACGCTACATCC
TATGATAGAATACCTTGAAGCTGCTGCGTGGCTAGCTGGGAACGATACTA
GCTTGTCTCGAAGCCAAAGTTTATTTCTGTCCACTGACGATCCCAACATA
ATCGATGATATCGCCCGCGGCCGTTATGACCATATGAATTTCACTTTCTA
CTTCACAAGGTAAATGGCAAACAGCATAGATGTCGTCAGCAAAGAGTTTA
GTGATACTTCACGGGACCTTGTGGATGACCAGTTCCTGCTGGCCCCGAGC
TGTTTTGATTTGGACAAAGGTCTTATTCCCAGTCTGTCCGACTGGCCGAC
GAAAGGCATCTCATGGTGGAGGGCGCAAACAACAAGGTATTTGGCTTGGC
CCTCTGAGAGCCTTTTTGCTTGGGCAAGACACTATTTTGTGCAAGACTTG
GTCAGACACCCATCTCCTACTAGTTGGAACGCCTCCATGCAACCTCCCCC
CGATAGTGCAATATGTATCCATATTCGCCACGGCGATAAATTCCAAGAGA
TGACGCTACATCCTATGATAGAATACCTTGAAGCTGCTGCGTGGCTAGCT
GGGAACGATACTAGCTTGTCTCGAAGCCAAAGTTTATTTCTGTCCACTGA
CGATCCCAACATAATCGATGATATCGCCCGCGGCCGTTATGACCATATGA
ATTTCACTTTCTACTTCACAAGGTAAATGGCAAACAGCATAGATGTCGTC
AGCAAAGAGTTTAGTGATACTTCACGGGACCTTGTGGATGACCAGTTCCT
GCTGGCCCCGAGCTGTTTTGATTTGGACAAAGGTCTTATTCCCAGTCTGT
CCGACTGGCCGACGAAAGGCATCTCATGGTGGAGGGCGCAAACAACAAGG
TATTTGGCTTGGCCCTCTGAGAGCCTTTTTGCTTGGGCAAGACACTATTT
TGTGCAAGACTTGGTCAGACACCCATCTCCTACTAGTTGGAACGCCTCCA
TGCAACCTCCCCCCGATAGTGCAATATGTATCCATATTCGCCACGGCGAT
AAATTCCAAGAGATGACGCTACATCCTATGATAGAATACCTTGAAGCTGC
TGCGTGGCTAGCTGGGAACGATACTAGCTTGTCTCGAAGCCAAAGTTTAT
TTCTGTCCACTGACGATCCCAACATAATCGATGATATCGCCCGCGGCCGT
TATGACCATATGAATTTCACTTTCTACTTCACAAGGTAAATGGCAAACAG
CATAGATGTCGTCAGCAAAGAGTTTAGTGATACTTCACGGGACCTTGTGG
ATGACCAGTTCCTGCTGGCCCCGAGCTGTTTTGATTTGGACAAAGGTCTT
ATTCCCAGTCTGTCCGACTGGCCGACGAAAGGCATCTCATGGTGGAGGGC
GCAAACAACAAGGTATTTGGCTTGGCCCTCTGAGAGCCTTTTTGCTTGGG
CAAGACACTATTTTGTGCAAGACTTGGTCAGACACCCATCTCCTACTAGT
TGGAACGCCTCCATGCAACCTCCCCCCGATAGTGCAATATGTATCCATAT
TCGCCACGGCGATAAATTCCAAGAGATGACGCTACATCCTATGATAGAAT
ACCTTGAAGCTGCTGCGTGGCTAGCTGGGAACGATACTAGCTTGTCTCGA
AGCCAAAGTTTATTTCTGTCCACTGACGATCCCAACATAATCGATGATAT
CGCCCGCGGCCGTTATGACCATATGAATTTCACTTTCTACTTCACAAGGT
AA

Synonyms

Publications