jgi.p|Nanoce1779_2|575135, mRNA_1050 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|575135
Unique Name	mRNA_1050
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2319
Alignment location	scaffold_2:1096543..1099296 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	575221
Track	FilteredModels2
ProteinId	575135

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:1096543..1099296 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575135	gene_1050	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575135	mRNA_1050-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1050	CDS_1050	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:1096543..1099296+
coding sequence from alignment at scaffold_2:1096543..1099296+

mRNA sequence

>mRNA_1050 ID=mRNA_1050|Name=jgi.p|Nanoce1779_2|575135|organism=Nannochloropsis oceanica|type=mRNA|length=2319bp
AGGCTGGGAGGCTGGTGGTGCCTTGGTGACAAAACGAAGACGCGAAACCA
AGCAATTCCGAATCAAATATAACAACAAAGTCTTTGACGCACTTGATATG
AAGATTTTGTGAGTGAAAGCACACCTTTCTCAACCATATTACATATATTG
GTCCAGATGCCAGGGCGCCACGCGGAAGCCGAAAAGATGGAGAATTGGAG
GGAAAGCTAGCTAGATTTGTGCCGCAGCTGGCAATGCACACGATGGTAGG
CGCTCATCTGAATACCTCACATTCCAAATTTGCGTACATCAATCTTACTA
GCCTGGGTTCATGCTTATGAAGTCAAGAACATCCGAAACCCTACCTACCC
AAATGGCCCATGCTGACCGCTAGCACGTTTGTGTGCCTGCCTCCACACTC
TTTCAAGTCGCTGTCTGTGGCTGGCGGACCGTCTCCTTCCCCTTCCCAAT
TTCTTGTCTTCACTCGCAAGCCATTTCCCTTGACCAAGCCCACACCTGTA
CTTAGAGAAATTGTGTAAGTTAGCTGGAAACTCTCGGGCCGTAGAAAGCT
TGGAAGGATGGCTGGCGTAGAAGCCTCGCTCCCCTCCTCCCATCCATCCT
CTTCTTCGTCGCTAGCCTCTAGGCGGGGAGGAGGCAAGAAGTCATGGCGT
TTCGTCATGTCGCCTTTGCCACTCATGTCCAACAGAGACACATTAAGCTT
AGACACATATTGACACGGTGGCCGGGGGCCAAAGCCCTTGTGGCGTCAAC
CCCAACACTTGCCTTGCTGCCCCCCCCTGCATCATCACCCCCCCCTGCTT
CTTTCCAATCCGCATAACTCATCCCACTCCGTCTCTCCCTACACGAACTT
AAAGGCGACCATGGGACGCGCCGTGACAGTGCGGGACATCAAGCCCCAAG
ACTTCATTGTCGCCTATGCTGCTCACTTGAAGACGAAGGACAACTTCGAG
GTCCCTAAGTGGGCAGACATCGTCAAGACCGGTATCGGCAAGGAATTGGC
CCCTTACGACCCTGACTGGTACTACACCCGGGCCGCGGCCGTCCTCCGCC
AGATCTATCTCAAGCAAGGTATTGGTGTAGGGGCGCTCCGACGCATCTAC
GGTGGCTCCAAGCGCCGTGGGGTGGAGCGATCGACCACAGTGCTGGGGGC
CGGGGGCTGCATCCGTCATGTGCTTATCCAGTTCGAGAACTTGAAGTACG
TGACAAAGGATAGCAACGGCGGGCGTAAGATTACCAAGGAGGGGCAGACG
GCCTTGGACCAGATCGCGGCCTCGGTTGCAAACGCTGAGGCGGACGAGTA
AATTACAACATCGACATTACATAGGACTAGCTAGTGGCGGGTGCTTTCTT
TGTTGGATGGGCGTGTACTTGTGTTTCTGGAATGGATGCTGCTACGGCTC
GCTCCTTTTGTTTGTTTTGATGGGGTGGACAAAGACACGTCTAGGCAAGG
AAGAAAAGGGGACACTGCAAAAGAAAAACCAATACCAAGCATATTCTCTG
TGGAGAGAGAAATGAATGATTTTATTTTGTTGGTGACACTTGTGTTGGTC
CATGCGTGGGGTCGGCGTGGTGGGGGTGGGGAAGACCTTCAACCGGCCAC
AACGGCCCTCCACATCGTATCCCTTTTTTCTTTCACTCTTTTTCGTCCTC
TTCCTTCTTCCCACCCCCCCTCCAGCGTCGAACTTCACCGCCTGGCCATG
CGCTCCGAGGCCTGCGTGGAAAGGCGAAGGTGCACTTATTAAACATAATT
ACAACAAACCCTACACACGTGAAGTGGGCAGTGATTTGCTAGTGTGTGTG
CGTGTGGAGATATACTAAGAGGTGAGAAATACTGCACACGCGAAATACAA
GAAAAACGAAACAATCTAATTCTTGCTCCGCGTCTTCTTCTCTTTTCCCC
AATTCGTCTTCGTTTTCTTCTACTCGTTGTTGTTCTTTTTTCTCGTCCTC
GTTTGTTTCTTCTGCATGTGCTTCCCCTCCTTCTTCGTGTGCTTGTCTTC
ATGCCCTCGCTCGTGTGCTATGTATGTACAAAAACACCGTCCCCCCTTCC
CTCCCCCTCTCCCGCTTTCACATAAACACGTGCTCGACTCGCACAAAGCA
ATTAAAAAGCAGCAGCGCACTTTCCGAGAAGCTTTATTCAGAACGTTCTT
CTCTCCTCTCTCCCCCACACTCTCAACTCCATGGAGAAATTTTCACATTC
CTCTCCTCCATCCCTCCCTCCCTCCCTCCCTCTCTCCCTCCCTTTCCTGT
CCGTGCTCTGGGTTTCTTGCATTTCTTGTACTTACACATGTTAACTTGTC
TTCTTGTCTTCCTTCCCTC

protein sequence of jgi.p|Nanoce1779_2|575135

>mRNA_1050-protein ID=mRNA_1050-protein|Name=jgi.p|Nanoce1779_2|575135|organism=Nannochloropsis oceanica|type=polypeptide|length=147bp
MGRAVTVRDIKPQDFIVAYAAHLKTKDNFEVPKWADIVKTGIGKELAPYD
PDWYYTRAAAVLRQIYLKQGIGVGALRRIYGGSKRRGVERSTTVLGAGGC
IRHVLIQFENLKYVTKDSNGGRKITKEGQTALDQIAASVANAEADE*

mRNA from alignment at scaffold_2:1096543..1099296+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1050 ID=mRNA_1050|Name=jgi.p|Nanoce1779_2|575135|organism=Nannochloropsis oceanica|type=mRNA|length=2754bp|location=Sequence derived from alignment at scaffold_2:1096543..1099296+ (Nannochloropsis oceanica)
AGGCTGGGAGGCTGGTGGTGCCTTGGTGACAAAACGAAGACGCGAAACCA
AGCAATTCCGAATCAAATATAACAACAAAGTCTTTGACGCACTTGATATG
AAGATTTTGTGAGTGAAAGCACACCTTTCTCAACCATATTACATATATTG
GTCCAGATGCCAGGGCGCCACGCGGAAGCCGAAAAGATGGAGAATTGGAG
GGAAAGCTAGCTAGATTTGTGCCGCAGCTGGCAATGCACACGATGGTAGG
CGCTCATCTGAATACCTCACATTCCAAATTTGCGTACATCAATCTTACTA
GCCTGGGTTCATGCTTATGAAGTCAAGAACATCCGAAACCCTACCTACCC
AAATGGCCCATGCTGACCGCTAGCACGTTTGTGTGCCTGCCTCCACACTC
TTTCAAGTCGCTGTCTGTGGCTGGCGGACCGTCTCCTTCCCCTTCCCAAT
TTCTTGTCTTCACTCGCAAGCCATTTCCCTTGACCAAGCCCACACCTGTA
CTTAGAGAAATTGTGTAAGTTAGCTGGAAACTCTCGGGCCGTAGAAAGCT
TGGAAGGATGGCTGGCGTAGAAGCCTCGCTCCCCTCCTCCCATCCATCCT
CTTCTTCGTCGCTAGCCTCTAGGCGGGGAGGAGGCAAGAAGTCATGGCGT
TTCGTCATGTCGCCTTTGCCACTCATGTCCAACAGAGACACATTAAGCTT
AGACACATATTGACACGGTGGCCGGGGGCCAAAGCCCTTGTGGCGTCAAC
CCCAACACTTGCCTTGCTGCCCCCCCCTGCATCATCACCCCCCCCTGCTT
CTTTCCAATCCGCATAACTCATCCCACTCCGTCTCTCCCTACACGAACTT
AAAGGCGACCATGGGACGCGCCGTGACAGTGCGGGACATCAAGCCCCAAG
ACTTCATTGTCGCCTATGCTGCTCACTTGAAGACGAAGGACAACTTCGAG
GTCCCTAAGTGGGCAGACATCGTCAAGACCGGTATCGGCAAGGAATTGGC
CCCTTACGACCCTGACTGGTACTACACCCGGGCCGCGGCCGTCCTCCGCC
AGATCTATCTCAAGCAAGGTATTGGTGTAGGGGCGCTCCGACGCATCTAC
GGTGGCTCCAAGCGCCGTGGGGTGGAGCGATCGACCACAGTGCTGGGGGC
CGGGGGCTGCATCCGTCATGTGCTTATCCAGTTCGAGGTACGTGTGGGGG
TCAGTGTGGCGTTGGATGGAGAAAAAAGGGAGAAGGGGAAGACTAGAGAG
AGTAGTATTCGAAGTAAGGAGGACGCAGCTTTTGATCTGGTAGCAGCGTG
GTACGAAAGAGATGGAAAGGAGTGGAACTCTGCGTGACTACGGGAAGGCT
TCCGTGTAATGGGACAGAGAGGCTGTAGAAAATTAAGGCGCAGTTGGTCA
ATGTGACGGGCACGCAGTTAGGTCAATGATCTATCTGCATGTGTGTTCAT
CTCTACCAGATGTTCTGTTGATATCGAGAGATATATTGTTTGAGAGAGAC
ATATGTTAATCCCTACGGATGAAGTACATGAAGGAACTCTAGCCACAATC
GATATGACCTGCCCATAAACTCAATTCCCTTCCTCTTTCTTCCTCCTTTT
TACTGTTCACGCCTGAAAACAGAACTTGAAGTACGTGACAAAGGATAGCA
ACGGCGGGCGTAAGATTACCAAGGAGGGGCAGACGGCCTTGGACCAGATC
GCGGCCTCGGTTGCAAACGCTGAGGCGGACGAGTAAATTACAACATCGAC
ATTACATAGGACTAGCTAGTGGCGGGTGCTTTCTTTGTTGGATGGGCGTG
TACTTGTGTTTCTGGAATGGATGCTGCTACGGCTCGCTCCTTTTGTTTGT
TTTGATGGGGTGGACAAAGACACGTCTAGGCAAGGAAGAAAAGGGGACAC
TGCAAAAGAAAAACCAATACCAAGCATATTCTCTGTGGAGAGAGAAATGA
ATGATTTTATTTTGTTGGTGACACTTGTGTTGGTCCATGCGTGGGGTCGG
CGTGGTGGGGGTGGGGAAGACCTTCAACCGGCCACAACGGCCCTCCACAT
CGTATCCCTTTTTTCTTTCACTCTTTTTCGTCCTCTTCCTTCTTCCCACC
CCCCCTCCAGCGTCGAACTTCACCGCCTGGCCATGCGCTCCGAGGCCTGC
GTGGAAAGGCGAAGGTGCACTTATTAAACATAATTACAACAAACCCTACA
CACGTGAAGTGGGCAGTGATTTGCTAGTGTGTGTGCGTGTGGAGATATAC
TAAGAGGTGAGAAATACTGCACACGCGAAATACAAGAAAAACGAAACAAT
CTAATTCTTGCTCCGCGTCTTCTTCTCTTTTCCCCAATTCGTCTTCGTTT
TCTTCTACTCGTTGTTGTTCTTTTTTCTCGTCCTCGTTTGTTTCTTCTGC
ATGTGCTTCCCCTCCTTCTTCGTGTGCTTGTCTTCATGCCCTCGCTCGTG
TGCTATGTATGTACAAAAACACCGTCCCCCCTTCCCTCCCCCTCTCCCGC
TTTCACATAAACACGTGCTCGACTCGCACAAAGCAATTAAAAAGCAGCAG
CGCACTTTCCGAGAAGCTTTATTCAGAACGTTCTTCTCTCCTCTCTCCCC
CACACTCTCAACTCCATGGAGAAATTTTCACATTCCTCTCCTCCATCCCT
CCCTCCCTCCCTCCCTCTCTCCCTCCCTTTCCTGTCCGTGCTCTGGGTTT
CTTGCATTTCTTGTACTTACACATGTTAACTTGTCTTCTTGTCTTCCTTC
CCTC

Coding sequence (CDS) from alignment at scaffold_2:1096543..1099296+

>mRNA_1050 ID=mRNA_1050|Name=jgi.p|Nanoce1779_2|575135|organism=Nannochloropsis oceanica|type=CDS|length=882bp|location=Sequence derived from alignment at scaffold_2:1096543..1099296+ (Nannochloropsis oceanica)
ATGGGACGCGCCGTGACAGTGCGGGACATCAAGCCCCAAGACTTCATTGT
CGCCTATGCTGCTCACTTGAAGACGAAGGACAACTTCGAGGTCCCTAAGT
GGGCAGACATCGTCAAGACCGGTATCGGCAAGGAATTGGCCCCTTACGAC
CCTGACTGGTACTACACCCGGGCCGCGGCCGTCCTCCGCCAGATCTATCT
CAAGCAAGGTATTGGTGTAGGGGCGCTCCGACGCATCTACGGTGGCTCCA
AGCGCCGTGGGGTGGAGCGATCGACCACAGTGCTGGGGGCCGGGGGCTGC
ATCCGTCATGTGCTTATCCAGTTCGAGAACTTGAAGTACGTGACAAAGGA
TAGCAACGGCGGGCGTAAGATTACCAAGGAGGGGCAGACGGCCTTGGACC
AGATCGCGGCCTCGGTTGCAAACGCTGAGGCGGACGAGTAAATGGGACGC
GCCGTGACAGTGCGGGACATCAAGCCCCAAGACTTCATTGTCGCCTATGC
TGCTCACTTGAAGACGAAGGACAACTTCGAGGTCCCTAAGTGGGCAGACA
TCGTCAAGACCGGTATCGGCAAGGAATTGGCCCCTTACGACCCTGACTGG
TACTACACCCGGGCCGCGGCCGTCCTCCGCCAGATCTATCTCAAGCAAGG
TATTGGTGTAGGGGCGCTCCGACGCATCTACGGTGGCTCCAAGCGCCGTG
GGGTGGAGCGATCGACCACAGTGCTGGGGGCCGGGGGCTGCATCCGTCAT
GTGCTTATCCAGTTCGAGAACTTGAAGTACGTGACAAAGGATAGCAACGG
CGGGCGTAAGATTACCAAGGAGGGGCAGACGGCCTTGGACCAGATCGCGG
CCTCGGTTGCAAACGCTGAGGCGGACGAGTAA

Synonyms

Publications